mRNA_S-dermatodea_contig937.17410.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig937.17410.1
Unique NamemRNA_S-dermatodea_contig937.17410.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: D7FIW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW1_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 2.640e-105
Identity = 174/288 (60.42%), Postives = 202/288 (70.14%), Query Frame = 1 
Query:    1 GLSMWELKYSFQDPVGEIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDSRQVFPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMDIGKCVENVESNLGPRGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVVGHGILDSFLAQVDSYFHRETVDTSKIDTLAEV------SDQNVQDATAGGVPPAIADVGLERENAPQCVSVQAND---------------AALAGDGSRRG----ARRPGQRALLRLRKK 789
            G S+  LKYSFQ+PVG+I I EDWSG+GNG+AGLQW GGVVLSRYMD RQ FPE+HFVG RVIEVGAGCGLTSIY ALRGADVTITDMD  KC +NV+ NL PRGL+G A V+RLEW  A +LAL +PPYD+VIAGDCLYEEACI+PLL+TMWAL+GP TE+LL GVVGH +L SFL Q   YF  ETVDTSKIDTLAE       SD    +A            GL+ + A + V+ +  +               AAL G+G        A+ PGQRAL+RLRKK
Sbjct:   54 GSSIMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGADVTITDMDPAKCTDNVDMNLDPRGLSGKASVRRLEWDCAAELALFEPPYDIVIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFLGQARQYFELETVDTSKIDTLAEELPLGNQSDAAAVEAALARARATAEPTGLDPDAAARSVAERGPEEERKAGGGVGGPQVKAALGGEGVESELAAVAQLPGQRALMRLRKK 341
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A6H5L0W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W2_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 1.660e-91
Identity = 133/177 (75.14%), Postives = 152/177 (85.88%), Query Frame = 1 
Query:    1 GLSMWELKYSFQDPVGEIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDSRQVFPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMDIGKCVENVESNLGPRGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVVGHGILDSFL 531
            G SM  LKYSFQ+PVG+I I EDWSG+GNG+AGLQW GGVVLSRYMD RQ FPE+HFVG RVIEVGAGCGLTSIY ALRGA+VTITDMD  KC +NV+ NL PRGL+G A V+RLEW  A +LA+ +PPYDV+IAGDCLYEEACI+PLL+TMWAL+GP TE+LL GVVGH +L SFL
Sbjct:   49 GSSMMTLKYSFQEPVGDIHITEDWSGDGNGLAGLQWPGGVVLSRYMDCRQAFPEDHFVGRRVIEVGAGCGLTSIYTALRGANVTITDMDPAKCADNVDMNLDPRGLSGKASVRRLEWDCAAELAMFEPPYDVIIAGDCLYEEACISPLLKTMWALSGPNTEVLLSGVVGHSVLASFL 225
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A836C9A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9A2_9STRA)

HSP 1 Score: 125 bits (315), Expect = 8.910e-31
Identity = 77/178 (43.26%), Postives = 104/178 (58.43%), Query Frame = 1 
Query:  262 MDIGKCVENVESNLGPRGLAGNAL-VQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVVGHGILDSFLAQVDSYFHRETVDTSKIDTLAEVSDQNVQDATAGGVPPAIADVGLERENAPQCVSVQANDAALAGDGSRRGARRPGQRALLRLRKKP 792
            MD  KC +++E+N   RGL  + + V+ L W    D+  LQPP+D+++AGDCLY+EACI PLLQTM +LA   T +LLCG VG  I+DSF  +VD YF R  VDT  IDTL++ S+ N  D             GL +  +    +V A+D             +PGQRALL +RK+P
Sbjct:    1 MDTEKCRDSIEANFEHRGLPLDTVQVEELVWGQT-DVTPLQPPFDIILAGDCLYQEACIEPLLQTMHSLASEDTLVLLCGAVGPKIIDSFNEKVDRYFERRVVDTKTIDTLSDDSEVNKGD-------------GLRQHTSS---AVGASDP------------QPGQRALLVMRKRP 149
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A7S3BBX9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BBX9_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.990e-20
Identity = 67/204 (32.84%), Postives = 99/204 (48.53%), Query Frame = 1 
Query:   13 WELKYSFQ--DPVGEIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDSRQVFPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMDIGKCVENVESNLGPRG-LAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVVGHGILDSFLAQVDSYFHRETVDTSKIDTLAEVSDQNV 615
            +EL YSF+  D  G + +A+   G   G A   W   +VL+R ++ R     E  +GCR IE+GAGCGL  + AA  GA+V +TD+ +   +    +    +  L G   VQ L W       LL   +D+V+A D  Y    +  LL+T+ ALAGP+T +LL         D F A     F  E +D   +  + +  D +V
Sbjct:   61 YELPYSFELTDGRGCLELAQTPFGP-EGFASTVWDSSIVLARMLEHRG----ESLLGCRCIELGAGCGLVGLAAAALGANVVLTDLPVNLRLLRANARANAKASLGGVPRVQPLAWGER----LLDEGFDMVVATDVFYAREAMPALLETLVALAGPRTSVLLAAGRNRHAADDFFALARINFEIEQLDREALHPIYQCGDVDV 255
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A833QJ31_9POAL (Protein N-lysine methyltransferase METTL21A isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QJ31_9POAL)

HSP 1 Score: 97.1 bits (240), Expect = 5.360e-19
Identity = 58/153 (37.91%), Postives = 87/153 (56.86%), Query Frame = 1 
Query:   88 GIAG-LQWLGGVVLSRYMDSRQVFPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMD--IGKCVENVESNLGPRGLAGNALVQRLEWASAEDLALLQPPY-DVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVVGH-GILDSFL 531
            G+ G + W  GVVL+++++    F +    G RV+E+GAGCGL  I AAL GA+V +TD+   +    +NV++N       G+A V  L W    D  L++P + D VI  D +Y EA +  LL T+  L GP T ILL G + +  +++ FL
Sbjct:   78 GVTGAVMWDSGVVLAKFLEHAVDFGQLSLKGTRVVELGAGCGLAGIVAALLGAEVVLTDLSDRLKLLKKNVDANFEDGPAKGSARVSELTWGDEIDSELVEPIHPDFVIGSDVIYCEAAVNDLLITLKQLCGPHTTILLAGELRNDAVVECFL 230
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A5J4Y5H2_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y5H2_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 3.010e-17
Identity = 61/215 (28.37%), Postives = 101/215 (46.98%), Query Frame = 1 
Query:   13 WELKYSFQDPV----GEIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDSRQV---FPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMD--IGKCVENVESNLGPRGL--------AGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVV-GHGILDSFLAQVDSYFHRETVDTSKIDTLAEVS 603
            W   +S Q  V      + +A+D +   N +    W   +VL+++++       F      G R IE+GAG GL     AL G D T+TD    I     N E+NL P  L        AG+  VQ L+W++ E  A + PP+D V+A DC+Y E  +   L+T+ A+   K+ +++   +    +   F +  + +F  +    SK+D + + S
Sbjct:   10 WNTHHSTQVDVELFGNTLHLAQDPNT--NHLGTTVWDSSIVLAKFLEKNAKKGDFARHRLKGKRAIELGAGMGLGGFAFALLGCDTTVTDTAEVISLLQRNYENNLSPAALRGQEMSPTAGHVTVQELDWSNLEHYATVNPPFDYVLAADCVYHEQIVEDFLRTVLAMTHSKSTVVVVNELRSEAVHSRFTSLFEQHFTIKRTPRSKMDAVHQHS 222
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: K3YUK5_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YUK5_SETIT)

HSP 1 Score: 92.0 bits (227), Expect = 4.170e-17
Identity = 58/173 (33.53%), Postives = 87/173 (50.29%), Query Frame = 1 
Query:  106 WLGGVVLSRYMDSRQV---FPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMD--IGKCVENVESNLG-------PRGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILL-CGVVGHGILDSFLAQVDSYFHRETVDTSKID 585
            W   +V  ++++       F      G RVIE+GAGCGL     AL G DVT TD    +   + NVE N           G  G+  V  L+W + E +  ++PP+D +I  D +Y E  + PL++T+ AL+GPKT+ILL   +    + +  +    S F  +TV  SK+D
Sbjct:   39 WDASMVFVKFLEKNSRKGRFCPSKMKGKRVIELGAGCGLAGFGMALLGCDVTTTDQVEVLPLLIRNVERNKSWISQSNSDSGSIGSITVAELDWGNKEHIKAVEPPFDYIIGTDVVYSEHLLQPLMETITALSGPKTKILLGYEIRSTTVHEKMMEMWKSNFVVKTVSKSKMD 211
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A453Q2U9_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453Q2U9_AEGTS)

HSP 1 Score: 90.5 bits (223), Expect = 4.900e-17
Identity = 49/142 (34.51%), Postives = 75/142 (52.82%), Query Frame = 1 
Query:  106 WLGGVVLSRYMDSRQV---FPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMD--IGKCVENVESNLG-------PRGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLC 495
            W   +V +++++       F      G R IE+GAGCGL  +  AL G DV  TD    +   + NVE N           G  G+  V  L+W + E +  ++PP+D +I  D +Y E  + PLL+T+ AL+GPKT++L+C
Sbjct:   79 WDASMVFAKFLEKNSRKGRFCPSKLKGKRAIELGAGCGLAGLGMALLGCDVVTTDQVEVLPLLMRNVERNKSWIAQSNPDSGSFGSVTVAELDWGNKEHIRAVEPPFDYIIGTDVVYSEHLLQPLLETIIALSGPKTKVLVC 220
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: M7YCU0_TRIUA (Uncharacterized protein n=19 Tax=Pooideae TaxID=147368 RepID=M7YCU0_TRIUA)

HSP 1 Score: 91.7 bits (226), Expect = 5.580e-17
Identity = 61/196 (31.12%), Postives = 96/196 (48.98%), Query Frame = 1 
Query:  106 WLGGVVLSRYMDSRQV---FPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMD--IGKCVENVESNLG-------PRGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILL-CGVVGHGILDSFLAQVDSYFHRETVDTSKIDTLAEVSDQNV--QDATAGGVPPA 648
            W   +V +++++       F      G R IE+GAGCGL  +  AL G DV  TD    +   + NVE N           G  G+ +V  L+W + E +  ++PP+D +I  D +Y E  + PLL+T+ AL+GPKT++LL   +    + +  +      F+ +TV  SK+D   +    N+   D  A  VP A
Sbjct:   39 WDASMVFAKFLEKNSRKGRFCPSKLKGKRAIELGAGCGLAGLGMALLGCDVVTTDQVEVLPLLMRNVERNKSWIAQSNPDSGSFGSVMVAELDWGNKEHIRAVEPPFDYIIGTDVVYSEHLLQPLLETIIALSGPKTKVLLGYEIRSTTVHEQMMEMWKINFNVKTVSKSKMDAKYQHPSINLYMMDLKASSVPEA 234
[Close]
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Match: A0A2P6TLS3_CHLSO (Uncharacterized protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLS3_CHLSO)

HSP 1 Score: 92.8 bits (229), Expect = 6.720e-17
Identity = 65/215 (30.23%), Postives = 102/215 (47.44%), Query Frame = 1 
Query:    4 LSMWELKYSF---QDPVG-EIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDS---RQVFPEEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDM-DIGKCVE-NVESNLGPRGL-----------AGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMWALAGPKTEILLCGVV-GHGILDSFLAQVDSYFHRETVDTSKID 585
            L  W   +S    Q+  G + ++A+D +    G     W   +VL++Y++    R  F      G R +E+GAG GL  +  AL GA+V  TD+ D+   +  NVE N+ P  L            G   V  L+W+     A  +PPYD ++A DC+Y E  +  LL T+ A+ GP+T+ ++        + D F+AQ   +F    V   K+D
Sbjct:    2 LERWNTHFSTTVNQELFGIDFQLAQDPNSSNLGTT--VWDASIVLAKYIEKNSRRGDFSRPKVRGKRALELGAGMGLAGMALALLGAEVVFTDIGDVLPLLRRNVEQNISPAALKLRDAGWAASEVGRTSVASLDWSDRSCYADFKPPYDFILAADCVYSELAVPHLLATVLAMGGPRTQAIITNEFRSQTVHDEFMAQFGRHFTIRKVAAGKMD 214
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig937.17410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIW1_ECTSI2.640e-10560.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0W2_9PHAE1.660e-9175.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C9A2_9STRA8.910e-3143.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3BBX9_9EUKA1.990e-2032.84Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A833QJ31_9POAL5.360e-1937.91Protein N-lysine methyltransferase METTL21A isofor... [more]
A0A5J4Y5H2_9CHLO3.010e-1728.37Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2... [more]
K3YUK5_SETIT4.170e-1733.53Uncharacterized protein n=14 Tax=Paniceae TaxID=14... [more]
A0A453Q2U9_AEGTS4.900e-1734.51Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]
M7YCU0_TRIUA5.580e-1731.12Uncharacterized protein n=19 Tax=Pooideae TaxID=14... [more]
A0A2P6TLS3_CHLSO6.720e-1730.23Uncharacterized protein n=1 Tax=Chlorella sorokini... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig937contigS-dermatodea_contig937:10962..14299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.9
Seed ortholog evalue1.9e-86
Seed eggNOG ortholog2880.D7FIW1
KEGG koko:K21806
EggNOG free text desc.lysine N-methyltransferase activity
EggNOG OGsKOG2793@1,KOG2793@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size1400
Cds size858
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.6428523-UTR-S-dermatodea_contig937:10961..114941622925403.6428523-UTR-S-dermatodea_contig937:10961..11494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 10962..11494 -
1694079910.2726324-UTR-S-dermatodea_contig937:10961..114941694079910.2726324-UTR-S-dermatodea_contig937:10961..11494Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 10962..11494 -
1622925403.721331-UTR-S-dermatodea_contig937:14290..142991622925403.721331-UTR-S-dermatodea_contig937:14290..14299Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 14291..14299 -
1694079910.3593361-UTR-S-dermatodea_contig937:14290..142991694079910.3593361-UTR-S-dermatodea_contig937:14290..14299Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig937 14291..14299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925403.6532135-CDS-S-dermatodea_contig937:11494..118241622925403.6532135-CDS-S-dermatodea_contig937:11494..11824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 11495..11824 -
1694079910.283029-CDS-S-dermatodea_contig937:11494..118241694079910.283029-CDS-S-dermatodea_contig937:11494..11824Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 11495..11824 -
1622925403.670613-CDS-S-dermatodea_contig937:12414..124681622925403.670613-CDS-S-dermatodea_contig937:12414..12468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 12415..12468 -
1694079910.2938313-CDS-S-dermatodea_contig937:12414..124681694079910.2938313-CDS-S-dermatodea_contig937:12414..12468Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 12415..12468 -
1622925403.6860414-CDS-S-dermatodea_contig937:12915..131271622925403.6860414-CDS-S-dermatodea_contig937:12915..13127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 12916..13127 -
1694079910.303969-CDS-S-dermatodea_contig937:12915..131271694079910.303969-CDS-S-dermatodea_contig937:12915..13127Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 12916..13127 -
1622925403.6983747-CDS-S-dermatodea_contig937:13647..137901622925403.6983747-CDS-S-dermatodea_contig937:13647..13790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 13648..13790 -
1694079910.3195422-CDS-S-dermatodea_contig937:13647..137901694079910.3195422-CDS-S-dermatodea_contig937:13647..13790Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 13648..13790 -
1622925403.7114296-CDS-S-dermatodea_contig937:14171..142901622925403.7114296-CDS-S-dermatodea_contig937:14171..14290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 14172..14290 -
1694079910.341249-CDS-S-dermatodea_contig937:14171..142901694079910.341249-CDS-S-dermatodea_contig937:14171..14290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig937 14172..14290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig937.17410.1prot_S-dermatodea_contig937.17410.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig937 11495..14290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig937.17410.1

>prot_S-dermatodea_contig937.17410.1 ID=prot_S-dermatodea_contig937.17410.1|Name=mRNA_S-dermatodea_contig937.17410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=286bp
MWELKYSFQDPVGEIRIAEDWSGEGNGIAGLQWLGGVVLSRYMDSRQVFP
EEHFVGCRVIEVGAGCGLTSIYAALRGADVTITDMDIGKCVENVESNLGP
RGLAGNALVQRLEWASAEDLALLQPPYDVVIAGDCLYEEACIAPLLQTMW
ALAGPKTEILLCGVVGHGILDSFLAQVDSYFHRETVDTSKIDTLAEVSDQ
NVQDATAGGVPPAIADVGLERENAPQCVSVQANDAALAGDGSRRGARRPG
QRALLRLRKKPRATGMGGAEEESLREGVAIETVVA*
back to top

mRNA from alignment at S-dermatodea_contig937:10962..14299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig937.17410.1 ID=mRNA_S-dermatodea_contig937.17410.1|Name=mRNA_S-dermatodea_contig937.17410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3338bp|location=Sequence derived from alignment at S-dermatodea_contig937:10962..14299- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGACTGTCCATGTGGGAGCTCAAGTACTCCTTCCAGGACCCAGTGGGCGA
GATTCGAATCGCGGAAGACTGGTCGGGAGAGGGTAACGGGATAGCCGGGC
TGCAGTGGCTAGGGGGAGTCGTGCTCAGGTAAGCCGGCGGCTTGTCTTCA
GACGGGGGTGTATTGTGCGAGCAGCTTGGAGGGAGTTTGCGGAACGACCG
AACTTGGCGGCGGACATGTTTTTGGGCGTACAGGGAGATAAGGAGATGTG
GAGCGGATAGCGCGTTGGACGAAGTTTTCTTGCGGTAAAGCATTGTGAGC
ATAGCAGTTAGCCTCGAAACAAGAGTCGACGCTACTGTCGTGCGCTGTTT
AGGCTTGGAATTTCCCGACGTCATCACGGCATGCATTGCTTTATTTTCAA
AGACCATCACACTTTCGACCGCACAGACTAAACCCGACCCAAACAACTCG
ACCGTCGCACCAACCCTTCTCTCCGGTCCCGCTTGAAACGCGACATCGAC
GGCAAGCAGCCGCTACATGGACAGCAGACAAGTATTCCCGGAGGAGCACT
TCGTGGGCTGTCGCGTGATCGAAGTTGGGGCGGGCTGCGGGTTGACTAGC
ATCTACGCCGCGCTTCGAGGGGCTGATGTGACCATCACCGACATGGATAT
CGGTGAGATGGGAACTGGCCGTGGTTCTGTTCACCGAGGTTTTTTTTTGG
GGGTGTGAGGGCGTAGCATCGTTTTGGATCTGTCCACGGTTTGACTGTTT
TCAGCTTCGTTTTGGTGGCCAAGGTGAACAGTCGAGTCTACTGCCGTACG
AACACGGGCCAGAGACTTGTTACCGTAAAAAACAAAACTCTGCATTTGTG
GTTTGCGCAAGCTATTGTTCAATCGGCGGATTGATGACACCTCCGTTAGA
TGTCACCCTCCACCCAAACCCTGCCCCTCACAACCCGGAGCGCCGTCGCC
AAAGTGCTGACAGAACGTCAAGCCGAAGTGCCCCTCGCGCGACGGAAAGC
CTGCATTAATTAGGAAGAACAAGGGTTCGATAAAAAATCTCAATGGAGAT
GGTTCGATAAAAGTCTGCATTAGGAAGAACAAGGGGTGGGGTGTATGTCA
ATGGAGAGACACCCACGGGGTACGCATTGAAATACACCCCTCTCACCTTG
AAAATTGATGATATGTCTACAGGCAAATGTGTCGAAAACGTCGAAAGCAA
TCTCGGTCCCCGGGGGCTGGCCGGGAACGCGCTCGTGCAGCGATTGGAGT
GGGCATCGGCAGAGGACTTGGCCCTGCTGCAGCCTCCGTACGACGTGGTG
ATCGCGGGTGATTGCCTATACGAGGAGGCGTGTATAGCGCCGCTTCTCCA
GACCATGTGGGCTCTGGCGGGGCCGAAAACGGAGGTGCGGGTTCTCTCTG
GCAGCGTTTTCCTACTGCATACCTTTCCGAGTCTAGCTTTCGAAGCCTGA
CATGCTTTTATCTTCCACAAACCTTTGTGTTCGTAATGTGCACTGTAAGT
AATGGCGCCGCTTCGGGAGTCCAGAAGAGCGGCCGGCTAAAGCTGGAGAC
TGCCGTGTACACCACAAAGCACAATGATTTTCCCCAAACAACGGTGGTGC
TAGTGATTTCCGATGATTTTAACAGTAGCACTTCCTTGCACCCGCCACGA
TTACACTTCTGACTGTGTGGAACGGATTGTGTATGAATCCGTTTTCACCA
TAGGACGAAATATTCGTCCCTAAACTCCCTCTCATAATTGTCGAGTACTG
CCGCAGACTAGCCTGTTCACGCCTCGCCATGTCCGGAACCCCCCCCCCCC
GCCCGCCCCCGACTGCTTTCGCTTGGGACAGATTTTGTTGTGCGGCGTGG
TCGGGCATGGGATACTTGATAGCTTCCTGGCTCAGGTAAGGGGTTGGCTC
GCTGCGCTGGTCGAACCTCTCGTGCATTAGTGCTGCCTGAGCGAATATGT
TTTTGTCAAGGTTACCGGTTTGGGGGAGATCCATCTGAAAGTTGAGCGAC
GATCAGCTGCCTAGGAGGTGGCACACGCTCTGTTACATTGGCCTTGGGAA
TTCCATTCGATTTTCATTCCCGGAAAGGAGTGTAGTTGTCTGGCCTGCGT
CTTGCACAGCCCACCAGAGATGGCGCAATGTGGTATTGTTTGTTTGGCGC
ACCTGTGTGAAGACAGCTAAACAATAACATTCCCTGAAAAGTCGTGCGTA
CGGCCCAATCAGGGTGTACTTGAAGATGGAATTTCCTTACGAATTATGGG
GCCGGCTAAGCCACGTTTGAGTCGGTGACCCTGCCGCACTCCGAATCCGA
GTCACTGCTCGAACTTCTGTTCCGCATGTGTGTCCGAGTACCGCGGCGTT
GTAGCTAACGTTCCAACTGAAAAAAACGAAACCCTAGATCCCATGCAGTA
CGAGAAAATGAGCCATCCAACACACCGTCCCGCCTCACCCCCCGCCTCTC
CCCGTCCCGGCACCTCGCTCTTCAGGTCGACTCATACTTCCACCGTGAGA
CGGTTGACACCTCCAAGATCGATACTCTGGCTGAGGTTTCCGATCAAAAC
GTTCAGGATGCAACCGCCGGTGGCGTGCCTCCGGCAATCGCCGACGTTGG
CCTCGAACGAGAAAACGCGCCGCAGTGTGTCAGCGTACAAGCGAATGACG
CGGCGTTGGCTGGGGACGGGTCAAGGAGAGGTGCGCGGCGTCCCGGGCAG
CGCGCGCTGCTGCGATTACGGAAGAAACCGCGGGCTACCGGCATGGGAGG
GGCGGAAGAGGAGTCGTTGAGAGAAGGGGTCGCAATAGAAACGGTCGTGG
CGTAGCGTTGGCTAACCTTGCGGGAATTTCGGTGGGACTGCCGCCGTTTC
GTTTTTCGGGCACCTGTCCTGGATAAAAACCCTCATCTTGCTATCGGAAA
AACGCTTTCCAACAAGCAGGGAGGAGATGCGATTATGTCTTGACCAGGCA
TTTGTTTTGAGCGAGTCGAGGTCTCGCCCTGGGATAACCAGAGCGCCGGA
ACTGGTGGAATACATATGTAGTCTGCGTTCGGGGCTTCGTCGAATGAGCG
TTGTCGCATCTCTTACCTTGGGTCATTCGCTTCTTCTCGAATCCCTTGAC
TTTTCACGACGGATATCGGGAAGCTCAATTCGGGTTTACTAGCTGGGCCG
GCCGTTTCCTCTCGCGTTTGGTTTTTCTTCGTCGCACCTCGTTCGGAACC
TGCCATAGCTAGAACAAGATCCGGGGCTCGAACAACTAAGGTGTGCTCCC
ATGTTGGCGAAACTCACCTCATCGACGCCGAACGTTGGCTGGTCGAGTCC
ACTAAAGTCCAGTTTTTTTTTTGTGTGATGGTGAGCCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig937:10962..14299-

>mRNA_S-dermatodea_contig937.17410.1 ID=mRNA_S-dermatodea_contig937.17410.1|Name=mRNA_S-dermatodea_contig937.17410.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1716bp|location=Sequence derived from alignment at S-dermatodea_contig937:10962..14299- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGAGCTCAAGTACTCCTTCCAGGACCCAGTGGGCGAGATTCGAAT
CGCGGAAGACTGGTCGGGAGAGGGTAACGGGATAGCCGGGCTGCAGTGGC
TAGGGGGAGTCGTGCTCAGATGTGGGAGCTCAAGTACTCCTTCCAGGACC
CAGTGGGCGAGATTCGAATCGCGGAAGACTGGTCGGGAGAGGGTAACGGG
ATAGCCGGGCTGCAGTGGCTAGGGGGAGTCGTGCTCAGCCGCTACATGGA
CAGCAGACAAGTATTCCCGGAGGAGCACTTCGTGGGCTGTCGCGTGATCG
AAGTTGGGGCGGGCTGCGGGTTGACTAGCATCTACGCCGCGCTTCGAGGG
GCTGATGTGACCATCACCGACATGGATATCGCCGCTACATGGACAGCAGA
CAAGTATTCCCGGAGGAGCACTTCGTGGGCTGTCGCGTGATCGAAGTTGG
GGCGGGCTGCGGGTTGACTAGCATCTACGCCGCGCTTCGAGGGGCTGATG
TGACCATCACCGACATGGATATCGGCAAATGTGTCGAAAACGTCGAAAGC
AATCTCGGTCCCCGGGGGCTGGCCGGGAACGCGCTCGTGCAGCGATTGGA
GTGGGCATCGGCAGAGGACTTGGCCCTGCTGCAGCCTCCGTACGACGTGG
TGATCGCGGGTGATTGCCTATACGAGGAGGCGTGTATAGCGCCGCTTCTC
CAGACCATGTGGGCTCTGGCGGGGCCGAAAACGGAGGCAAATGTGTCGAA
AACGTCGAAAGCAATCTCGGTCCCCGGGGGCTGGCCGGGAACGCGCTCGT
GCAGCGATTGGAGTGGGCATCGGCAGAGGACTTGGCCCTGCTGCAGCCTC
CGTACGACGTGGTGATCGCGGGTGATTGCCTATACGAGGAGGCGTGTATA
GCGCCGCTTCTCCAGACCATGTGGGCTCTGGCGGGGCCGAAAACGGAGAT
TTTGTTGTGCGGCGTGGTCGGGCATGGGATACTTGATAGCTTCCTGGCTC
AGATTTTGTTGTGCGGCGTGGTCGGGCATGGGATACTTGATAGCTTCCTG
GCTCAGGTCGACTCATACTTCCACCGTGAGACGGTTGACACCTCCAAGAT
CGATACTCTGGCTGAGGTTTCCGATCAAAACGTTCAGGATGCAACCGCCG
GTGGCGTGCCTCCGGCAATCGCCGACGTTGGCCTCGAACGAGAAAACGCG
CCGCAGTGTGTCAGCGTACAAGCGAATGACGCGGCGTTGGCTGGGGACGG
GTCAAGGAGAGGTGCGCGGCGTCCCGGGCAGCGCGCGCTGCTGCGATTAC
GGAAGAAACCGCGGGCTACCGGCATGGGAGGGGCGGAAGAGGAGTCGTTG
AGAGAAGGGGTCGCAATAGAAACGGTCGTGGCGTAGGTCGACTCATACTT
CCACCGTGAGACGGTTGACACCTCCAAGATCGATACTCTGGCTGAGGTTT
CCGATCAAAACGTTCAGGATGCAACCGCCGGTGGCGTGCCTCCGGCAATC
GCCGACGTTGGCCTCGAACGAGAAAACGCGCCGCAGTGTGTCAGCGTACA
AGCGAATGACGCGGCGTTGGCTGGGGACGGGTCAAGGAGAGGTGCGCGGC
GTCCCGGGCAGCGCGCGCTGCTGCGATTACGGAAGAAACCGCGGGCTACC
GGCATGGGAGGGGCGGAAGAGGAGTCGTTGAGAGAAGGGGTCGCAATAGA
AACGGTCGTGGCGTAG
back to top