prot_S-dermatodea_contig1285.1740.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig1285.1740.1
Unique Nameprot_S-dermatodea_contig1285.1740.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length233
Homology
BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.220e-36
Identity = 113/270 (41.85%), Postives = 132/270 (48.89%), Query Frame = 0
Query:   20 RNGRVIVTHLFSAPLIEITKTDGA------KKVDELSYEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRP--------------------------------NRPDGAR--RIVHFTGHGERGLLTLEDDRGQVQYVDAQGLLAMMQCRQVGDPGGF-------------ASNAAKPACWGAASEEPRGCYGG---FGAGAGYAPFDEHAAMAAPPPELDGEEAMAWGEDDAATAPLNGLQLVFLSSCYSQSVA 233
            R+G VI THLFSAPL+E     G       +KVD+LSYE E  TL +TL  A K + F+SEAANT+SFARAVGC  P S  +  RP                                +  +G R  RIVHFTGHG  G LT EDD GQ+QYV    LL+M+   +    GG              A  AA PA    A+  P GCY G   F  G GYAPF + +    P   L G E           AP  GLQLVFLSSC+SQSVA
Sbjct:   45 RDGGVIFTHLFSAPLVEQKMAPGGSGSVLVEKVDKLSYEEERDTLHRTLDNADKRVRFLSEAANTRSFARAVGCRVPPSPPRASRPGSVGSSLSAGSMXXXXXXXXXXXXXXXXXGDASAAEGERECRIVHFTGHGVPGELTFEDDSGQLQYVGEAELLSMLLRGRKESGGGSGXXXGSRKHLGMPAHAAAAPA----AAPVP-GCYAGELGFEGGIGYAPFVDVSESVEPEARLGGGEG----------APRTGLQLVFLSSCHSQSVA 299          
BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Match: A0A836CE12_9STRA (CHAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE12_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 9.030e-9
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 0
Query:   23 RVIVTHLFSAPLIEITKTDGAKKVDELSYEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRPNRPDGARRIVHFTGHGERGLLTLEDDRGQVQYVDAQGL 137
            R  + HL+++PL++  +  G + VD+L YE E   L   L+ + + + F SE A  K+F R +        ++C           ++HFTGHGE G LTLED+ G+ Q V+ + L
Sbjct:   44 RPSLCHLYASPLVKDVE-GGLEPVDKLQYEIERRQLQTVLAHSNRALEFRSEVATPKAFLRNL--------TRC----------AVLHFTGHGEPGALTLEDEVGKQQLVEERKL 139          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE1.220e-3641.85SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CE12_9STRA9.030e-933.91CHAT domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1285contigS-dermatodea_contig1285:15182..15880 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1285.1740.1mRNA_S-dermatodea_contig1285.1740.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig1285 15176..15880 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig1285.1740.1 ID=prot_S-dermatodea_contig1285.1740.1|Name=mRNA_S-dermatodea_contig1285.1740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MAHMDVRRDRRGGNFSSSGRNGRVIVTHLFSAPLIEITKTDGAKKVDELS
YEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRPN
RPDGARRIVHFTGHGERGLLTLEDDRGQVQYVDAQGLLAMMQCRQVGDPG
GFASNAAKPACWGAASEEPRGCYGGFGAGAGYAPFDEHAAMAAPPPELDG
EEAMAWGEDDAATAPLNGLQLVFLSSCYSQSVA
back to top