mRNA_S-dermatodea_contig93598.17403.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93598.17403.1
Unique NamemRNA_S-dermatodea_contig93598.17403.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.110e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +DVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV
Sbjct:  525 EDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 569
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A6H5KYN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-21
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +DVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV
Sbjct:  318 EDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 362
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A7S2D2W0_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2D2W0_9DINO)

HSP 1 Score: 84.7 bits (208), Expect = 5.060e-20
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            ++VR LR+RQFPED GP++HPIRPESYIAMDNFYTATVY KGAEV
Sbjct:   40 EEVRILRARQFPEDGGPMAHPIRPESYIAMDNFYTATVYCKGAEV 84
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A7S2XIK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIK9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.110e-19
Identity = 38/45 (84.44%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +DVR LR RQF EDAGP+SHPIRPESYI+MDNFYTATVY KGAEV
Sbjct:    1 EDVRGLRGRQFNEDAGPMSHPIRPESYISMDNFYTATVYSKGAEV 45
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A800JM53_9BACT (Aminopeptidase N n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800JM53_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.190e-19
Identity = 41/44 (93.18%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    4 DVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            DVR LRSRQFPEDAGPLSHPIRPESY+AMDNFYTATVY KGAEV
Sbjct:  352 DVRQLRSRQFPEDAGPLSHPIRPESYVAMDNFYTATVYEKGAEV 395
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: UPI00037FA476 (aminopeptidase N n=1 Tax=Kiloniella laminariae TaxID=454162 RepID=UPI00037FA476)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-18
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            QDVRTLR+RQFPED+GPLSHPIRPESYI ++NFYTATVY KGAEV
Sbjct:  351 QDVRTLRARQFPEDSGPLSHPIRPESYIEINNFYTATVYEKGAEV 395
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A3M2ALX2_9BACT (Aminopeptidase N n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2ALX2_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.440e-18
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +DV+ LR RQFPEDAGPL+HPIRPESY+AMDNFYTATVY KGAEV
Sbjct:  352 EDVKALRKRQFPEDAGPLAHPIRPESYVAMDNFYTATVYNKGAEV 396
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A8J9S8T6_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S8T6_PHATR)

HSP 1 Score: 85.1 bits (209), Expect = 3.660e-18
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +DVR LR+RQF EDAGP+SHPIRPESYI+MDNFYT TVY+KGAEV
Sbjct:   45 EDVRVLRARQFSEDAGPMSHPIRPESYISMDNFYTGTVYIKGAEV 89
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A0G4EQU1_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQU1_VITBC)

HSP 1 Score: 85.1 bits (209), Expect = 3.670e-18
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            +D+  LRSRQFPEDAGP++HPIRPESYIAMDNFYTATVY KGAEV
Sbjct:  454 EDIIMLRSRQFPEDAGPMAHPIRPESYIAMDNFYTATVYEKGAEV 498
[Close]
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Match: A0A516H5A3_9PROT (Aminopeptidase N n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A516H5A3_9PROT)

HSP 1 Score: 85.1 bits (209), Expect = 3.680e-18
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV 135
            QDVR LR RQFPEDAGPL+HPIRP+SYIA+DNFYTATVY KG+EV
Sbjct:  345 QDVRLLRGRQFPEDAGPLAHPIRPDSYIAIDNFYTATVYEKGSEV 389
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93598.17403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI1.110e-2197.78Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KYN1_9PHAE1.120e-2197.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2D2W0_9DINO5.060e-2082.22Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2XIK9_9STRA1.110e-1984.44Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A800JM53_9BACT1.190e-1993.18Aminopeptidase N n=1 Tax=Planctomycetes bacterium ... [more]
UPI00037FA4761.440e-1886.67aminopeptidase N n=1 Tax=Kiloniella laminariae Tax... [more]
A0A3M2ALX2_9BACT1.440e-1884.44Aminopeptidase N n=1 Tax=Planctomycetes bacterium ... [more]
A0A8J9S8T6_PHATR3.660e-1882.22Hypothetical protein n=1 Tax=Phaeodactylum tricorn... [more]
A0A0G4EQU1_VITBC3.670e-1884.44Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A516H5A3_9PROT3.680e-1884.44Aminopeptidase N n=3 Tax=Alphaproteobacteria TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93598contigS-dermatodea_contig93598:124..258 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue6.7e-18
Seed eggNOG ortholog2880.D7FQZ3
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGsCOG0308@1,KOG1046@2759
EC3.4.11.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.9107947-CDS-S-dermatodea_contig93598:123..2581622925402.9107947-CDS-S-dermatodea_contig93598:123..258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93598 124..258 +
1694079909.7136154-CDS-S-dermatodea_contig93598:123..2581694079909.7136154-CDS-S-dermatodea_contig93598:123..258Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93598 124..258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93598.17403.1prot_S-dermatodea_contig93598.17403.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93598 124..258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93598.17403.1

>prot_S-dermatodea_contig93598.17403.1 ID=prot_S-dermatodea_contig93598.17403.1|Name=mRNA_S-dermatodea_contig93598.17403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=45bp
QDVRTLRSRQFPEDAGPLSHPIRPESYIAMDNFYTATVYVKGAEV
back to top

mRNA from alignment at S-dermatodea_contig93598:124..258+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93598.17403.1 ID=mRNA_S-dermatodea_contig93598.17403.1|Name=mRNA_S-dermatodea_contig93598.17403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at S-dermatodea_contig93598:124..258+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACGTGCGCACGCTACGATCGAGGCAGTTTCCAGAGGATGCCGGGCC
GCTATCGCACCCGATCCGGCCAGAGTCGTACATCGCCATGGACAACTTCT
ACACCGCGACCGTCTACGTCAAGGGGGCCGAGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig93598:124..258+

>mRNA_S-dermatodea_contig93598.17403.1 ID=mRNA_S-dermatodea_contig93598.17403.1|Name=mRNA_S-dermatodea_contig93598.17403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at S-dermatodea_contig93598:124..258+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGACGTGCGCACGCTACGATCGAGGCAGTTTCCAGAGGATGCCGGGCC
GCTATCGCACCCGATCCGGCCAGAGTCGTACATCGCCATGGACAACTTCT
ACACCGCGACCGTCTACGTCAAGGGGGCCGAGGTGCAGGACGTGCGCACG
CTACGATCGAGGCAGTTTCCAGAGGATGCCGGGCCGCTATCGCACCCGAT
CCGGCCAGAGTCGTACATCGCCATGGACAACTTCTACACCGCGACCGTCT
ACGTCAAGGGGGCCGAGGTG
back to top