mRNA_S-dermatodea_contig1285.1740.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1285.1740.1
Unique NamemRNA_S-dermatodea_contig1285.1740.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Match: A0A6H5KXM6_9PHAE (SH2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM6_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 1.300e-36
Identity = 113/270 (41.85%), Postives = 132/270 (48.89%), Query Frame = 1 
Query:   64 RNGRVIVTHLFSAPLIEITKTDGA------KKVDELSYEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRP--------------------------------NRPDGAR--RIVHFTGHGERGLLTLEDDRGQVQYVDAQGLLAMMQCRQVGDPGGF-------------ASNAAKPACWGAASEEPRGCYGG---FGAGAGYAPFDEHAAMAAPPPELDGEEAMAWGEDDAATAPLNGLQLVFLSSCYSQSVA 705
            R+G VI THLFSAPL+E     G       +KVD+LSYE E  TL +TL  A K + F+SEAANT+SFARAVGC  P S  +  RP                                +  +G R  RIVHFTGHG  G LT EDD GQ+QYV    LL+M+   +    GG              A  AA PA    A+  P GCY G   F  G GYAPF + +    P   L G E           AP  GLQLVFLSSC+SQSVA
Sbjct:   45 RDGGVIFTHLFSAPLVEQKMAPGGSGSVLVEKVDKLSYEEERDTLHRTLDNADKRVRFLSEAANTRSFARAVGCRVPPSPPRASRPGSVGSSLSAGSMXXXXXXXXXXXXXXXXXGDASAAEGERECRIVHFTGHGVPGELTFEDDSGQLQYVGEAELLSMLLRGRKESGGGSGXXXGSRKHLGMPAHAAAAPA----AAPVP-GCYAGELGFEGGIGYAPFVDVSESVEPEARLGGGEG----------APRTGLQLVFLSSCHSQSVA 299
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BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Match: A0A836CE12_9STRA (CHAT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE12_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 9.400e-9
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 1 
Query:   73 RVIVTHLFSAPLIEITKTDGAKKVDELSYEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRPNRPDGARRIVHFTGHGERGLLTLEDDRGQVQYVDAQGL 417
            R  + HL+++PL++  +  G + VD+L YE E   L   L+ + + + F SE A  K+F R +        ++C           ++HFTGHGE G LTLED+ G+ Q V+ + L
Sbjct:   44 RPSLCHLYASPLVKDVE-GGLEPVDKLQYEIERRQLQTVLAHSNRALEFRSEVATPKAFLRNL--------TRC----------AVLHFTGHGEPGALTLEDEVGKQQLVEERKL 139
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1285.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXM6_9PHAE1.300e-3641.85SH2 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CE12_9STRA9.400e-933.91CHAT domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1285contigS-dermatodea_contig1285:15176..15880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size705
Cds size699
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.6713994-UTR-S-dermatodea_contig1285:15175..151811622924264.6713994-UTR-S-dermatodea_contig1285:15175..15181Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1285 15176..15181 +
1694079135.6035204-UTR-S-dermatodea_contig1285:15175..151811694079135.6035204-UTR-S-dermatodea_contig1285:15175..15181Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1285 15176..15181 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.6819136-CDS-S-dermatodea_contig1285:15181..158801622924264.6819136-CDS-S-dermatodea_contig1285:15181..15880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1285 15182..15880 +
1694079135.613712-CDS-S-dermatodea_contig1285:15181..158801694079135.613712-CDS-S-dermatodea_contig1285:15181..15880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1285 15182..15880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1285.1740.1prot_S-dermatodea_contig1285.1740.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1285 15182..15880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1285.1740.1

>prot_S-dermatodea_contig1285.1740.1 ID=prot_S-dermatodea_contig1285.1740.1|Name=mRNA_S-dermatodea_contig1285.1740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=233bp
MAHMDVRRDRRGGNFSSSGRNGRVIVTHLFSAPLIEITKTDGAKKVDELS
YEGEGSTLVKTLSGAGKEIHFMSEAANTKSFARAVGCPPPASSSQCPRPN
RPDGARRIVHFTGHGERGLLTLEDDRGQVQYVDAQGLLAMMQCRQVGDPG
GFASNAAKPACWGAASEEPRGCYGGFGAGAGYAPFDEHAAMAAPPPELDG
EEAMAWGEDDAATAPLNGLQLVFLSSCYSQSVA
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mRNA from alignment at S-dermatodea_contig1285:15176..15880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1285.1740.1 ID=mRNA_S-dermatodea_contig1285.1740.1|Name=mRNA_S-dermatodea_contig1285.1740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=705bp|location=Sequence derived from alignment at S-dermatodea_contig1285:15176..15880+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGTCGATGGCGCATATGGACGTCCGCCGTGACCGCCGTGGCGGCAACTT
CTCCTCCTCTGGGAGAAACGGCCGCGTCATAGTCACACACCTCTTCTCTG
CACCCCTGATCGAAATCACCAAGACCGACGGCGCCAAGAAGGTCGACGAG
CTGAGCTACGAGGGAGAGGGTAGCACCCTCGTGAAGACGCTCTCCGGGGC
TGGCAAGGAGATACACTTTATGTCCGAGGCCGCAAACACAAAGTCCTTCG
CACGAGCCGTCGGGTGCCCGCCCCCAGCCAGCAGCTCTCAGTGCCCAAGA
CCGAACCGCCCCGACGGGGCACGCCGCATCGTCCACTTCACAGGCCACGG
CGAAAGGGGCCTGTTGACCTTGGAAGATGATCGCGGACAGGTGCAGTACG
TGGACGCTCAGGGCCTGTTGGCGATGATGCAGTGCCGCCAGGTGGGAGAC
CCAGGAGGGTTTGCCTCCAATGCGGCGAAACCAGCGTGCTGGGGGGCGGC
GAGCGAGGAGCCTCGAGGCTGCTACGGAGGCTTCGGAGCAGGAGCAGGCT
ATGCTCCCTTCGACGAACACGCGGCGATGGCGGCGCCGCCCCCGGAGTTG
GACGGAGAGGAGGCGATGGCGTGGGGTGAAGATGATGCTGCTACGGCGCC
GCTGAACGGGTTGCAGCTTGTGTTTCTCAGCTCTTGCTACTCGCAGAGCG
TCGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1285:15176..15880+

>mRNA_S-dermatodea_contig1285.1740.1 ID=mRNA_S-dermatodea_contig1285.1740.1|Name=mRNA_S-dermatodea_contig1285.1740.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at S-dermatodea_contig1285:15176..15880+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGCATATGGACGTCCGCCGTGACCGCCGTGGCGGCAACTTCTCCTC
CTCTGGGAGAAACGGCCGCGTCATAGTCACACACCTCTTCTCTGCACCCC
TGATCGAAATCACCAAGACCGACGGCGCCAAGAAGGTCGACGAGCTGAGC
TACGAGGGAGAGGGTAGCACCCTCGTGAAGACGCTCTCCGGGGCTGGCAA
GGAGATACACTTTATGTCCGAGGCCGCAAACACAAAGTCCTTCGCACGAG
CCGTCGGGTGCCCGCCCCCAGCCAGCAGCTCTCAGTGCCCAAGACCGAAC
CGCCCCGACGGGGCACGCCGCATCGTCCACTTCACAGGCCACGGCGAAAG
GGGCCTGTTGACCTTGGAAGATGATCGCGGACAGGTGCAGTACGTGGACG
CTCAGGGCCTGTTGGCGATGATGCAGTGCCGCCAGGTGGGAGACCCAGGA
GGGTTTGCCTCCAATGCGGCGAAACCAGCGTGCTGGGGGGCGGCGAGCGA
GGAGCCTCGAGGCTGCTACGGAGGCTTCGGAGCAGGAGCAGGCTATGCTC
CCTTCGACGAACACGCGGCGATGGCGGCGCCGCCCCCGGAGTTGGACGGA
GAGGAGGCGATGGCGTGGGGTGAAGATGATGCTGCTACGGCGCCGCTGAA
CGGGTTGCAGCTTGTGTTTCTCAGCTCTTGCTACTCGCAGAGCGTCGCGA
TGGCGCATATGGACGTCCGCCGTGACCGCCGTGGCGGCAACTTCTCCTCC
TCTGGGAGAAACGGCCGCGTCATAGTCACACACCTCTTCTCTGCACCCCT
GATCGAAATCACCAAGACCGACGGCGCCAAGAAGGTCGACGAGCTGAGCT
ACGAGGGAGAGGGTAGCACCCTCGTGAAGACGCTCTCCGGGGCTGGCAAG
GAGATACACTTTATGTCCGAGGCCGCAAACACAAAGTCCTTCGCACGAGC
CGTCGGGTGCCCGCCCCCAGCCAGCAGCTCTCAGTGCCCAAGACCGAACC
GCCCCGACGGGGCACGCCGCATCGTCCACTTCACAGGCCACGGCGAAAGG
GGCCTGTTGACCTTGGAAGATGATCGCGGACAGGTGCAGTACGTGGACGC
TCAGGGCCTGTTGGCGATGATGCAGTGCCGCCAGGTGGGAGACCCAGGAG
GGTTTGCCTCCAATGCGGCGAAACCAGCGTGCTGGGGGGCGGCGAGCGAG
GAGCCTCGAGGCTGCTACGGAGGCTTCGGAGCAGGAGCAGGCTATGCTCC
CTTCGACGAACACGCGGCGATGGCGGCGCCGCCCCCGGAGTTGGACGGAG
AGGAGGCGATGGCGTGGGGTGAAGATGATGCTGCTACGGCGCCGCTGAAC
GGGTTGCAGCTTGTGTTTCTCAGCTCTTGCTACTCGCAGAGCGTCGCG
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