mRNA_S-dermatodea_contig9354.17399.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9354.17399.1
Unique NamemRNA_S-dermatodea_contig9354.17399.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A6H5JF92_9PHAE (6-phosphogluconolactonase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF92_9PHAE)

HSP 1 Score: 394 bits (1011), Expect = 1.030e-131
Identity = 202/276 (73.19%), Postives = 232/276 (84.06%), Query Frame = 3
Query:  102 MTTTLLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILAGLAGAD-MDWSRCKIFFADERCVPLDHKDSNHKAWEGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAF---RLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQV-VDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQCSPQMAALATKC 914
            MTTTLLVGS+PD LA ELV+R+G IA++SV  RGVFNV VSGGSMPKIL+GLA A+ +DWS+ +IFFADERCVPLDH DSN+KAWEGLFSSSGIPAENV+AVRTDL+PE AAADYQA+L+  F             ++ P  +P  P FDA+LLG+GPDGHTCSLFPSHPLL ER+KWVA+IE+SPKPPPQRVT TYPVLNNSRNVMFIGTGEGKASLLPQLL V  DG +ESAG SSPYPAARV+VA+G+ L WCVD AAA+QC P++ ALATKC
Sbjct:    1 MTTTLLVGSSPDALATELVRRLGAIAKESVLARGVFNVTVSGGSMPKILSGLAQAEGIDWSKTRIFFADERCVPLDHTDSNYKAWEGLFSSSGIPAENVVAVRTDLTPEEAAADYQAKLRHHFPXXXXXXXXXXXXESLPTASPP-PSFDAALLGVGPDGHTCSLFPSHPLLEERSKWVAYIEDSPKPPPQRVTLTYPVLNNSRNVMFIGTGEGKASLLPQLLSVGTDGALESAGESSPYPAARVKVAEGKALAWCVDEAAASQCPPEIVALATKC 275          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A3M6VDW2_9STRA (6-phosphogluconolactonase n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDW2_9STRA)

HSP 1 Score: 216 bits (549), Expect = 7.960e-63
Identity = 119/259 (45.95%), Postives = 166/259 (64.09%), Query Frame = 3
Query:  120 VGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILA-GLAGA--DMDWSRCKIFFADERCVPLDHKDSNHKAW-EGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQCS 884
            V STPD + A + Q I  ++++++   G F VA+SGGS+PKIL  GL     ++D+S+  ++FADERCV LDH DSN+KA  E LF    IP   + ++   L+P++ A DY  +L E +       G+  +TP+  P LP FD  LLG+GPDGHTCSLFP HPLL E+T +VA IE+SPKPP QR+T TYPV+NN+ NV F+ TG GKA L+P ++ +          + P PAA +++ DG ++ W +D  AAA  S
Sbjct:    5 VSSTPDKVGAAVGQLIFKLSKETITANGRFTVALSGGSLPKILKKGLQAIKDEVDFSKWFVYFADERCVSLDHNDSNYKACKEALFDFISIPESQIFSIDASLTPKSMAVDYTKKLAEVW-------GNDVSTPLVLPVLPRFDLILLGMGPDGHTCSLFPGHPLLEEKTLFVASIEDSPKPPSQRITLTYPVVNNAANVAFVATGAGKAKLIPHMVGIEKR-------TPPLPAANIKLIDG-EIYWFIDEDAAAMLS 248          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A3F2RX10_9STRA (6-phosphogluconolactonase n=22 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RX10_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.660e-58
Identity = 120/263 (45.63%), Postives = 160/263 (60.84%), Query Frame = 3
Query:  114 LLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKIL-AGLAG--ADMDWSRCKIFFADERCVPLDHKDSNHKAWEG-LFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQCSPQ 890
            L V STPD +  ++ + I  +++ ++   G F VA+SGGS+PKIL  GL     D+D+S+  ++FADERCVPLDH DSN+KA +  LF    +P   +  +   LSP   A DY  +L E +      G D          LP FD  LLG+GPDGHTCSLFP HPLL E+T +VA IE+SPKPPPQR+T TYPV+NN+ NV F+ TG GKA L+P ++ V          + P PAA V+  DG  + W +D  AAA+ S +
Sbjct:   27 LRVSSTPDQVGVDVGKLIHDLSKQAIAAHGRFTVALSGGSLPKILNKGLESIKGDVDFSKWFVYFADERCVPLDHDDSNYKACKAALFDFIPVPTSQIYTIDASLSPADMAVDYTKKLAEIW------GSD----------LPRFDLILLGMGPDGHTCSLFPGHPLLEEKTLFVASIEDSPKPPPQRITLTYPVVNNAANVAFVATGAGKAELIPHMVGVEKR-------TPPLPAANVKPTDGV-VYWFIDEDAAAKLSDE 265          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A5D6XPB3_9STRA (6-phosphogluconolactonase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPB3_9STRA)

HSP 1 Score: 202 bits (514), Expect = 7.040e-58
Identity = 119/258 (46.12%), Postives = 163/258 (63.18%), Query Frame = 3
Query:  117 LVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKIL-AGLAG--ADMDWSRCKIFFADERCVPLDHKDSNHKAW-EGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQ 878
            +V  TPDD+ A + + +  ++++++  RG F +A+SGGS+PKIL  GL+    D+++++  +FFADERCVPL+H DSN+KA  E LF    IPA  +  +   LSPEAAA DY A+L   +       GD          LP FD  LLG+GPDGHTCSLFP H LL ERT +VA I++SPKPPPQR+T TYPV+NN+ ++ F+ TG GKA L+P +L    G+        P PAA V+   G  + W +D  AAA+
Sbjct:    4 VVRPTPDDVGAAVGELVLRVSQEAIAARGRFTLALSGGSLPKILNKGLSALQGDVNYAKWHVFFADERCVPLEHDDSNYKACKEALFDHVAIPAAQIHTIDASLSPEAAAVDYTAKLATIW-------GDE---------LPRFDLILLGMGPDGHTCSLFPGHKLLQERTLFVASIDDSPKPPPQRITLTYPVVNNAEHIAFVATGAGKAELMPHML----GRETR---EPPLPAADVKPTHGV-VYWYIDQDAAAK 237          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: K3WB39_GLOUD (6-phosphogluconolactonase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WB39_GLOUD)

HSP 1 Score: 192 bits (488), Expect = 4.540e-54
Identity = 113/258 (43.80%), Postives = 157/258 (60.85%), Query Frame = 3
Query:  117 LVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKIL-AGLAG--ADMDWSRCKIFFADERCVPLDHKDSNHKAW-EGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQ 878
            +V  T D++ + + + +  +++ ++   G F +A+SGGS+PKIL  GLA    D+D+S+  ++FADERCVPLD  DSN+KA  E LF    IPA  +  +   LSPEAAA DY A+L   +      G +          LP FD  LLG+GPDGHTCSLFP H LL E   +VA IE+SPKPPPQR+T TYPV+NN+ +V F+ TG GKA L+P +       + +     P PAA V+  +G  + W +D  AA++
Sbjct:    4 VVRPTADEVGSAVGELVLSVSQKAIATHGRFTLALSGGSLPKILNKGLAAIQGDVDYSKWHVYFADERCVPLDSDDSNYKACKEALFDHIAIPAAQIYTIDASLSPEAAAVDYTAKLASVW------GSE----------LPRFDLILLGMGPDGHTCSLFPGHKLLKEDKLFVASIEDSPKPPPQRITLTYPVVNNAEHVAFVATGAGKADLMPHM-------VGTEKRDPPLPAAAVKPKNGT-VYWYIDQDAASK 237          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A8K1FBT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBT4_PYTOL)

HSP 1 Score: 191 bits (485), Expect = 4.760e-53
Identity = 115/254 (45.28%), Postives = 152/254 (59.84%), Query Frame = 3
Query:  111 TLLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKIL-AGLAGAD--MDWSRCKIFFADERCVPLDHKDSNHKAW-EGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVD 860
            T++V +  D + A + + +   ++ ++  RG F VA+SGGS+PKIL  G++     +D+S+  +FFADERCVPLDH DSN KA  E LF    IPA+ +  +   LSPE AA DY A+L      T  G             LP FD  LLG+GPDGHTCSLFP HPLL E   +VA IE+SPKPPPQR+T TYPV+NN+ +V FI TG  KA L+  +L +   +        P PAA V+   GR + W +D
Sbjct:   37 TVVVHANADGVGAAVGRLVQERSQQAIATRGKFTVALSGGSLPKILNKGVSEIKDTVDFSKWHVFFADERCVPLDHDDSNFKACKEALFDHVPIPADQIYTLDASLSPEQAAVDYTAKL-----ATIWGS-----------ELPRFDLLLLGMGPDGHTCSLFPGHPLLDEHKLFVASIEDSPKPPPQRITLTYPVVNNAAHVAFIATGSSKAPLMAHMLGLEQRE-------PPLPAALVQPPQGR-VTWYID 266          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A2D4CA35_PYTIN (6-phosphogluconolactonase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CA35_PYTIN)

HSP 1 Score: 189 bits (481), Expect = 9.270e-53
Identity = 105/217 (48.39%), Postives = 139/217 (64.06%), Query Frame = 3
Query:  120 VGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKIL-AGLAGAD--MDWSRCKIFFADERCVPLDHKDSNHKAW-EGLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLL 758
            V ++ D +   + Q +   +R+++ + G F +A+SGGS+PKIL  GLA     +D+S+  +FFADERCVPLDH DSN+KA  E LF    IPA  +  +   LSPEAAAADY  +L   +      G +          LP FD  LLG+GPDGHTCSLFP HPLL E+  +VA IE+SPKPPPQR+T TYPV+NN+ +V F+ TG  KA L+  +L
Sbjct:   21 VFASTDAVGLAVGQLVHKHSREAIAKHGRFTLALSGGSLPKILNKGLASIKDGLDFSKWHVFFADERCVPLDHDDSNYKACKEALFDHVSIPASQIYTIDASLSPEAAAADYTTKLASVW------GAE----------LPRFDLLLLGMGPDGHTCSLFPGHPLLNEQRLFVAAIEDSPKPPPQRITLTYPVVNNAAHVAFVATGASKAPLMAHML 221          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: M4BY53_HYAAE (6-phosphogluconolactonase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BY53_HYAAE)

HSP 1 Score: 189 bits (479), Expect = 1.120e-52
Identity = 113/261 (43.30%), Postives = 154/261 (59.00%), Query Frame = 3
Query:  114 LLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILA-GLAGA--DMDWSRCKIFFADERCVPLDHKDSNHKAWEG-LFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAAQCS 884
            L V  T D++  ++ Q I  +++ ++ +   F VA SGGS+PKIL+ GL      +D+S+  ++FADERCVPLDH DSN+KA +  L    G+P   V A+   L+P A A DY  +L                  V    +P FD  LLG+GPDGH CSLFPSHPLL E+T +VA IE+SPKPP QR+T TYPVLNN+ N+ F+ TG  KA L+P ++ +          + P PAA V+  DG  + W +D  AAA+ S
Sbjct:    3 LSVSKTIDEVGIDVCQLIVDLSKRAIAKNDRFTVAFSGGSLPKILSKGLPVIRDHIDFSKWFVYFADERCVPLDHDDSNYKACKAALLDDIGVPESQVFAIDASLTPTAMAEDYTKKL----------------AAVWGSHVPRFDLILLGMGPDGHMCSLFPSHPLLKEKTLFVASIEDSPKPPSQRITLTYPVLNNAANIAFVATGASKAELMPHMIGIEKR-------TPPLPAANVKPTDGV-VYWFIDNDAAAELS 239          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: A0A836C903_9STRA (6-phosphogluconolactonase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C903_9STRA)

HSP 1 Score: 189 bits (480), Expect = 1.690e-52
Identity = 111/261 (42.53%), Postives = 156/261 (59.77%), Query Frame = 3
Query:   96 STMTTTLLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILAGLAGAD-MDWSRCKIFFADERCVPLDHKDSNHKAWEGLFSSS-GIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAA 872
            S     L+V  T   L  +L + I  +A  ++  RGVF +A+SGGS+PK+L+GLA A+ ++W +  +F  DERCVP    +S+      L  S   IPA +V A+   + PE AAA Y+A+L+  F      GGDA   PV     P FDA +LG GPDGHT SLFP H LLGER +WVAH+ +SPKPPP R+T T PV+  +R V F+ TG+GKA+LL ++    +G+       +  P    + + G+ L+W +D+AAA
Sbjct:    5 SAAAQVLVVAPTTATLTDKLTRDICALAERAIGARGVFTIALSGGSLPKMLSGLATAEGVEWDKWHVFLCDERCVPESDPESSMATIRALLLSKVPIPASHVHAMAQGVPPEEAAAQYEAQLRALF------GGDA---PV-----PRFDALMLGCGPDGHTASLFPGHALLGERARWVAHLTDSPKPPPARITLTLPVIRAARVVAFVATGDGKAALLRRVFAAPEGRGLEVVEDAALPCTLAKPSSGQ-LVWYLDSAAA 250          
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Match: UPI0001CBA7E8 (6-phosphogluconolactonase-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA7E8)

HSP 1 Score: 186 bits (472), Expect = 1.180e-51
Identity = 109/249 (43.78%), Postives = 154/249 (61.85%), Query Frame = 3
Query:  138 DLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILA-GLAGAD-MDWSRCKIFFADERCVPLDHKDSNHKAWE-GLFSSSGIPAENVIAVRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLLGLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSRNVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLWCVDAAAAA 875
            D+ +++   +   +R +++ RG FNV VSGGS+ KIL+ G+ G + +DW++ K+FF DER VP DH+DS +K ++  +F+   IP+EN+  +   LS E AA DY  ++              D  P E   LP FD  +LG+GPDGHTCSLFP H LL E    VA I +SPKPPP RVT ++PV+N +R  MF+ TG GKA +L ++L+  D        S+P PAARV+  +G +L W +D AAAA
Sbjct:   14 DIPSQVCAFVADKSRHAIESRGQFNVGVSGGSVAKILSTGMPGLENIDWTKWKVFFCDERLVPFDHEDSTYKFFKKNMFNKVNIPSENIFPIDPSLSVEDAAKDYAKKV--------------DKVPKENN-LPVFDLLILGMGPDGHTCSLFPGHKLLQETEVAVAPISDSPKPPPCRVTLSFPVINATRCAMFVSTGAGKADILQKVLEGND--------SAPLPAARVKPTNG-ELHWFLDTAAAA 238          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9354.17399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF92_9PHAE1.030e-13173.196-phosphogluconolactonase n=2 Tax=Ectocarpus TaxID... [more]
A0A3M6VDW2_9STRA7.960e-6345.956-phosphogluconolactonase n=1 Tax=Peronospora effu... [more]
A0A3F2RX10_9STRA1.660e-5845.636-phosphogluconolactonase n=22 Tax=Phytophthora Ta... [more]
A0A5D6XPB3_9STRA7.040e-5846.126-phosphogluconolactonase n=1 Tax=Pythium brassicu... [more]
K3WB39_GLOUD4.540e-5443.806-phosphogluconolactonase n=1 Tax=Globisporangium ... [more]
A0A8K1FBT4_PYTOL4.760e-5345.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CA35_PYTIN9.270e-5348.396-phosphogluconolactonase n=1 Tax=Pythium insidios... [more]
M4BY53_HYAAE1.120e-5243.306-phosphogluconolactonase n=1 Tax=Hyaloperonospora... [more]
A0A836C903_9STRA1.690e-5242.536-phosphogluconolactonase n=1 Tax=Tribonema minus ... [more]
UPI0001CBA7E81.180e-5143.786-phosphogluconolactonase-like n=1 Tax=Saccoglossu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9354contigS-dermatodea_contig9354:4737..8373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score398.7
Seed ortholog evalue2.2e-108
Seed eggNOG ortholog2880.D8LJ68
KEGG rclassRC00537
KEGG koko:K01057
KEGG ReactionR02035
KEGG Pathwayko00030,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00004,M00006,M00008
EggNOG free text desc.6-phosphogluconolactonase activity
EggNOG OGsCOG0363@1,KOG3147@2759
EC3.1.1.31
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog description6-Phosphogluconolactonase
Ec32 orthologEc-02_004960.1
Exons5
Model size1666
Cds size816
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.5644395-UTR-S-dermatodea_contig9354:4736..54851622925402.5644395-UTR-S-dermatodea_contig9354:4736..5485Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9354 4737..5485 -
1694079909.4314353-UTR-S-dermatodea_contig9354:4736..54851694079909.4314353-UTR-S-dermatodea_contig9354:4736..5485Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9354 4737..5485 -
1622925402.6398304-UTR-S-dermatodea_contig9354:8272..83731622925402.6398304-UTR-S-dermatodea_contig9354:8272..8373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9354 8273..8373 -
1694079909.519355-UTR-S-dermatodea_contig9354:8272..83731694079909.519355-UTR-S-dermatodea_contig9354:8272..8373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9354 8273..8373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.5796835-CDS-S-dermatodea_contig9354:5485..56981622925402.5796835-CDS-S-dermatodea_contig9354:5485..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 5486..5698 -
1694079909.446174-CDS-S-dermatodea_contig9354:5485..56981694079909.446174-CDS-S-dermatodea_contig9354:5485..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 5486..5698 -
1622925402.5901403-CDS-S-dermatodea_contig9354:6172..64471622925402.5901403-CDS-S-dermatodea_contig9354:6172..6447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 6173..6447 -
1694079909.4577317-CDS-S-dermatodea_contig9354:6172..64471694079909.4577317-CDS-S-dermatodea_contig9354:6172..6447Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 6173..6447 -
1622925402.6000576-CDS-S-dermatodea_contig9354:6748..68401622925402.6000576-CDS-S-dermatodea_contig9354:6748..6840Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 6749..6840 -
1694079909.4752374-CDS-S-dermatodea_contig9354:6748..68401694079909.4752374-CDS-S-dermatodea_contig9354:6748..6840Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 6749..6840 -
1622925402.6138783-CDS-S-dermatodea_contig9354:7555..76501622925402.6138783-CDS-S-dermatodea_contig9354:7555..7650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 7556..7650 -
1694079909.4886103-CDS-S-dermatodea_contig9354:7555..76501694079909.4886103-CDS-S-dermatodea_contig9354:7555..7650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 7556..7650 -
1622925402.6251807-CDS-S-dermatodea_contig9354:8131..82721622925402.6251807-CDS-S-dermatodea_contig9354:8131..8272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 8132..8272 -
1694079909.506405-CDS-S-dermatodea_contig9354:8131..82721694079909.506405-CDS-S-dermatodea_contig9354:8131..8272Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9354 8132..8272 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9354.17399.1prot_S-dermatodea_contig9354.17399.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9354 5486..8272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9354.17399.1

>prot_S-dermatodea_contig9354.17399.1 ID=prot_S-dermatodea_contig9354.17399.1|Name=mRNA_S-dermatodea_contig9354.17399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=272bp
MTTTLLVGSTPDDLAAELVQRIGVIARDSVQERGVFNVAVSGGSMPKILA
GLAGADMDWSRCKIFFADERCVPLDHKDSNHKAWEGLFSSSGIPAENVIA
VRTDLSPEAAAADYQARLKEAFRLTCGGGGDADATPVETPALPCFDASLL
GLGPDGHTCSLFPSHPLLGERTKWVAHIENSPKPPPQRVTFTYPVLNNSR
NVMFIGTGEGKASLLPQLLQVVDGKIESAGVSSPYPAARVEVADGRDLLW
CVDAAAAAQCSPQMAALATKC*
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mRNA from alignment at S-dermatodea_contig9354:4737..8373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9354.17399.1 ID=mRNA_S-dermatodea_contig9354.17399.1|Name=mRNA_S-dermatodea_contig9354.17399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3637bp|location=Sequence derived from alignment at S-dermatodea_contig9354:4737..8373- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAACCCCGATCTCACCACACAGTCCCGTGCTCCGCTGTTGTGCCCTGTTG TGCAGCCCACCACGGCCCAACGACGCACTGCGTAAAGCGCTGTTCTCTAC CATGACAACGACCCTGCTGGTGGGATCTACCCCGGACGACCTCGCCGCCG AGCTCGTCCAGCGGATAGGCGTCATTGCTCGGGATTCGGTGCAGGAGCGA GGAGTGTTCAATGTGGCTGTCTCAGGGGGTTCGATGCCGAAGGTAAACCT CGACTCATTGTCCCGTCGCATCTGTCGCCACGATACGACACAACAGTACT TCTGTGATTGCTTCGATGCGCTACTTGAGGGCTGCTTTGCTTGGGGGTCA TACTGATGCTCGGTCGTCGGCTCAGTACGTCGCTTGTAATAGACCTCTTC ATGCCAAACGCTGCTCTGCTGTGTGGCGAGGAAGAAAATGCGGCGTAACG TGTCCCGTTTCCGGGGTATATAACATATAACATTATATCATTCCGATCGC CCGACTTGCGTTGTCGTTGCTGCTTTGGTTGAAAGTTGAAGTTTTCAGCA CGTAAAAATCGCCTATAAATAGAAGAAGCTTATCATAGCAAATCCAATCA AAGCCTCAGCAGGCATGTTGATTCCTTTCCACACGTGTTTAAATTGCGTT CTCTGTATGCCCCAATGCTCTGAATACTGAATACGCATCGGTGTGCCGCC TTCTTTGATATGCCTGGCGACAGATTCTCGCAGGCCTTGCCGGCGCCGAC ATGGACTGGTCCAGGTGCAAGATATTCTTCGCCGACGAGCGCTGCGTCCC TCTTGACCACAAGGATAGGTGTGTGCGTGTGAATTTTTGTGTACGTTTGC CCATTTGGAATACTGGCTCGAGTCGTGATATAGCTCTAAATACTGTTGTG TAATCGTGGCATGTGTTTGACGTCTGTCGCCAGGTACATACGCCCAACTG TTGTCGTAACTTGCTGACCCGACCCGTGGTTCAACGCGAGACACCCGATT TACCCCCGCTCCGCAAACTTTTCACAGCGCGGGGATCCTCGTTGGGGGTA GAGGCGAGTGGAAGGGTGTCTGCAGTGGGGCGTCTATCAAATGACCCTCG TTGAAGGTGGATGCTGTGGACTGAAGTGTTGCAACTCTTCGTGTGTGGGC ACAACAATAAATGTGTTCAATTGTTCGTGCTTGGGCGAGAAATTCGCCGC GTGGATTGGCGCGCTGATGGTAGTAACCGAGCAGGCTCCCCTCAGATGAC AGTCACATTTCTATATTACCGGGTTTGGTGTCGGATTCAGAAGTAGAGCG ATCGCTGCTCAAGTTCTCGGGAGTGAGCAGAGCCTGCCAAGCGGCACTTG CGGGGTAGTTTTCTCGCTCGGTGTGTACCTCTGCCCCCCCCAAAACAAAA CTCTTTTGGTTGACATTTGAGACATTTCTGTTCAAAACCTCCTCCTAGCT TTGAAGGGGCCCCAGCGTGCATGCCATGGTGGGAGTGATAGTACGCCCCC TCCGTCCCTCGTATCCGCACGCAAACAATACAGCAACCACAAGGCCTGGG AGGGGCTGTTTTCTTCTTCCGGCATCCCCGCTGAAAACGTAATCGCGGTC AGGACCGATCTTTCCCCAGAAGCAGGTCAGCAGTTGGAACTACAACTACT ACTACTACTACTATAATAGCTGGTGTAGCGTACGTTCTGTATTGGCGCTT GGTGAGGGCAAGTACCGCGAACAACTGCACAATACGCGGTGGGAGATTTG TAGTAATATATTTGGCTGTTGCACCAGCTGCTTGTGTGAATCGCATGACA TGCCCTGGTTGCAACACGTGGGTTGAAATAAGGAATCCCGTTGTGGCGCA CGGGAGTGCAAAATTCTCTACTCAATACAACCCACGAAAACCATTTTACC CTCCCCCTCTCTCCTTCATTTGCCAGCGGCGGCAGACTACCAGGCCAGAC TCAAGGAAGCGTTTCGTCTGACGTGCGGAGGGGGGGGGGACGCCGACGCC ACCCCTGTGGAAACTCCGGCACTTCCGTGCTTTGACGCCTCGCTGTTGGG ACTGGGGCCCGACGGACACACGTGCTCGTTGTTCCCATCCCACCCGCTGC TCGGGGAGCGTACGAAGTGGGTCGCCCACATCGAAAACTCGCCCAAGCCG CCGCCTCAGCGAGTCACGTTCACCTACCCGGTGCTGAACAACTCGCGGAA TGTGGGTGACCTGTCGTAGGACCATGGAATTGGTTTCGGGGGCGGTGGGT GTGGCGAAAGGGGGGGGCTCGGCATAGTTGTCGCGCGGGGACTGTTGATC GCGAACCGCTTTTTATGGCGCTTTTTCTCGTCCCGGTAACTCTTGACACG ATGTAGATAGGGCAAGCCTGTAGCATGTGGTAGCTGCGGCGCTCCAGACG CGGTTGTCTTCACCCCCCGTAGAAATACTGGGATATAAGAAGCGGCCCGA CAATGCAATAATTTAAGAAAACACAATAGGAAAAGCCATATTTAGCCACC TTTGGCGGAGTAGGAAGGAACGATTGGCCATCGGTGATCGATCCTGTGGG AACAATGCTCTCTCCATCCTCCCGAAAACGCGCGGTCAATGGCCACACAG CTAAGGCATGCAAAACCTGACTACCCCCCCCACACACACCGTCCTCTTCC CGCCCCGCCCGAAACACGCACGCAGGTCATGTTCATCGGAACGGGAGAAG GAAAAGCCTCCTTACTCCCTCAACTACTTCAGGTAGTCGATGGCAAGATT GAATCCGCCGGCGTATCATCACCTTATCCGGCGGCGAGGGTGGAGGTTGC GGATGGGCGGGATCTGCTGTGGTGCGTCGACGCGGCCGCGGCGGCGCAGT GTTCTCCGCAGATGGCGGCACTCGCGACCAAGTGCTAGGTAGAGCTGCCA AGCGCGAATGGTTCGCTGCTGGTGATCCTGCGGCACTGAAGGTCGGTATT GCAGGCTACGCTGTTTGTTTTGATGTTGAAGGCGGTCACTACGCTGGGGT TCGAGTGTCTCAGCACCCACATCTCGAACTCTGTACGTGTTTTCTTGTGC ACGACGAAAAGGGGCGTGGCTTTGGAGCCCGCATCTATTGACGCTGGAAT TTTGTAACGAAGAGTGTGGCAAAGTGTGTTTGAACAAGTAGAGCTTTGTA CGGCGATTTACGGCCGTGGTTCGGCGTTTCTGTGCCGTTGGTCAGCATGC AATAACAGCGCAGGGAATCACTAGACCCGGAGCTGCCGAGCTCACGCGCG GAACGCCGAATGCGACTTAGCCGTAGCCCATATTTAAACGCGTCAAGACT GACTCTGCCTTGCTTCGGCAGGTCCGCTCGACTCGGGGGGTGTGCATTCA AGTGCGAGCACGTACGTCTCTCGTTCTCGGCTGTGTCCAATACATTTATG GTTTACTAAGGTTACGCTACACACTCGTCTCTGGTACACATACGGTGATC GGTGTAGGGGTGAAAACAGCTCTCACGCGGTTTGTACGTGAGCAGGACAT TATTTAAATCCGGCCGGTTGTATATTCCGTCGCCACACAGTTAGCCGCGT GTTAGCGCGGGTTTGCTTTGGTGGTTGTGTCATCAATTGCATCTGATGTT GGGAGTGTCTCCTTCTGACACTTAACCGTGTACCCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9354:4737..8373-

>mRNA_S-dermatodea_contig9354.17399.1 ID=mRNA_S-dermatodea_contig9354.17399.1|Name=mRNA_S-dermatodea_contig9354.17399.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig9354:4737..8373- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAACGACCCTGCTGGTGGGATCTACCCCGGACGACCTCGCCGCCGA
GCTCGTCCAGCGGATAGGCGTCATTGCTCGGGATTCGGTGCAGGAGCGAG
GAGTGTTCAATGTGGCTGTCTCAGGGGGTTCGATGCCGAAGATGACAACG
ACCCTGCTGGTGGGATCTACCCCGGACGACCTCGCCGCCGAGCTCGTCCA
GCGGATAGGCGTCATTGCTCGGGATTCGGTGCAGGAGCGAGGAGTGTTCA
ATGTGGCTGTCTCAGGGGGTTCGATGCCGAAGATTCTCGCAGGCCTTGCC
GGCGCCGACATGGACTGGTCCAGGTGCAAGATATTCTTCGCCGACGAGCG
CTGCGTCCCTCTTGACCACAAGGATAGATTCTCGCAGGCCTTGCCGGCGC
CGACATGGACTGGTCCAGGTGCAAGATATTCTTCGCCGACGAGCGCTGCG
TCCCTCTTGACCACAAGGATAGCAACCACAAGGCCTGGGAGGGGCTGTTT
TCTTCTTCCGGCATCCCCGCTGAAAACGTAATCGCGGTCAGGACCGATCT
TTCCCCAGAAGCAGCAACCACAAGGCCTGGGAGGGGCTGTTTTCTTCTTC
CGGCATCCCCGCTGAAAACGTAATCGCGGTCAGGACCGATCTTTCCCCAG
AAGCAGCGGCGGCAGACTACCAGGCCAGACTCAAGGAAGCGTTTCGTCTG
ACGTGCGGAGGGGGGGGGGACGCCGACGCCACCCCTGTGGAAACTCCGGC
ACTTCCGTGCTTTGACGCCTCGCTGTTGGGACTGGGGCCCGACGGACACA
CGTGCTCGTTGTTCCCATCCCACCCGCTGCTCGGGGAGCGTACGAAGTGG
GTCGCCCACATCGAAAACTCGCCCAAGCCGCCGCCTCAGCGAGTCACGTT
CACCTACCCGGTGCTGAACAACTCGCGGAATCGGCGGCAGACTACCAGGC
CAGACTCAAGGAAGCGTTTCGTCTGACGTGCGGAGGGGGGGGGGACGCCG
ACGCCACCCCTGTGGAAACTCCGGCACTTCCGTGCTTTGACGCCTCGCTG
TTGGGACTGGGGCCCGACGGACACACGTGCTCGTTGTTCCCATCCCACCC
GCTGCTCGGGGAGCGTACGAAGTGGGTCGCCCACATCGAAAACTCGCCCA
AGCCGCCGCCTCAGCGAGTCACGTTCACCTACCCGGTGCTGAACAACTCG
CGGAATGTCATGTTCATCGGAACGGGAGAAGGAAAAGCCTCCTTACTCCC
TCAACTACTTCAGGTAGTCGATGGCAAGATTGAATCCGCCGGCGTATCAT
CACCTTATCCGGCGGCGAGGGTGGAGGTTGCGGATGGGCGGGATCTGCTG
TGGTGCGTCGACGCGGCCGCGGCGGCGCAGTGTTCTCCGCAGATGGCGGC
ACTCGCGACCAAGTGCTAGGTCATGTTCATCGGAACGGGAGAAGGAAAAG
CCTCCTTACTCCCTCAACTACTTCAGGTAGTCGATGGCAAGATTGAATCC
GCCGGCGTATCATCACCTTATCCGGCGGCGAGGGTGGAGGTTGCGGATGG
GCGGGATCTGCTGTGGTGCGTCGACGCGGCCGCGGCGGCGCAGTGTTCTC
CGCAGATGGCGGCACTCGCGACCAAGTGCTAG
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