mRNA_S-dermatodea_contig935.17393.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig935.17393.1
Unique NamemRNA_S-dermatodea_contig935.17393.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig935.17393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig935contigS-dermatodea_contig935:158..968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size811
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig935.17393.1prot_S-dermatodea_contig935.17393.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig935 343..765 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.088349-UTR-S-dermatodea_contig935:157..3421622925402.088349-UTR-S-dermatodea_contig935:157..342Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 158..342 +
1694079909.1055887-UTR-S-dermatodea_contig935:157..3421694079909.1055887-UTR-S-dermatodea_contig935:157..342Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 158..342 +
1622925402.109571-UTR-S-dermatodea_contig935:765..9681622925402.109571-UTR-S-dermatodea_contig935:765..968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 766..968 +
1694079909.1288416-UTR-S-dermatodea_contig935:765..9681694079909.1288416-UTR-S-dermatodea_contig935:765..968Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig935 766..968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925402.1002905-CDS-S-dermatodea_contig935:342..7651622925402.1002905-CDS-S-dermatodea_contig935:342..765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig935 343..765 +
1694079909.1161523-CDS-S-dermatodea_contig935:342..7651694079909.1161523-CDS-S-dermatodea_contig935:342..765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig935 343..765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig935.17393.1

>prot_S-dermatodea_contig935.17393.1 ID=prot_S-dermatodea_contig935.17393.1|Name=mRNA_S-dermatodea_contig935.17393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=141bp
MIRIRISISISIIINTGITISSTKERTQSRRARDHQPRQAHPPPAYPSIL
RYHNARTIPRVLLSHTHARTIIPCFARQCLSLTLRHCSKITTLQKGCVTQ
KRELSPSTLLHNPRPPKHPRYTFSRRSPFFFCSRVQVAWF*
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mRNA from alignment at S-dermatodea_contig935:158..968+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig935.17393.1 ID=mRNA_S-dermatodea_contig935.17393.1|Name=mRNA_S-dermatodea_contig935.17393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=811bp|location=Sequence derived from alignment at S-dermatodea_contig935:158..968+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CACACACACACCAACCCCTGGGCCATCAGGACAAATAAACGCAGACGCAC
TAACACGAACGTGATAATCAGCATCATCATCATGACCACAAAGTAACGAA
CGCAAAGCAGGCAAGAGCGCGCGGCCAAAGGCTGTCACAAGCTCATCCTT
CTGCTCATCCCTGCCGGGCGACGTAATAATCACCAATGATCAGGATCAGG
ATCAGCATCAGCATCAGCATCATCATCAACACCGGCATCACCATCAGCAG
CACAAAGGAACGAACGCAAAGCAGGCGAGCGCGCGACCACCAGCCACGAC
AAGCTCATCCTCCTCCTGCCTATCCATCCATCCTGCGTTATCATAATGCA
AGGACAATTCCCCGTGTACTCCTCTCTCACACCCACGCACGAACTATCAT
TCCATGCTTTGCTCGCCAATGTCTCTCTCTGACCTTGCGCCACTGTTCGA
AGATTACAACCTTACAGAAGGGTTGTGTGACTCAAAAACGCGAACTGTCA
CCCTCAACCCTGCTTCACAATCCGCGCCCCCCCAAACATCCTCGTTATAC
TTTCAGCCGACGCAGCCCATTTTTCTTCTGTAGTCGAGTACAAGTTGCTT
GGTTTTGAAGCACTACTTTTGCTGCTGCGCTGCTTGGCTGCGCCAGATTA
TCACAGCCCCCGGCACGAATGCACGAAAGCGAGCTCATCACCATCATGGA
CCGGCATCGTGGAATATAGGATGGAGACAACGAAAATTCCACAAAAACAA
AAACGAACGGGACAACCATTTCCAGGCACGCACACACACTCACAGGCATC
ACAACCACCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig935:158..968+

>mRNA_S-dermatodea_contig935.17393.1 ID=mRNA_S-dermatodea_contig935.17393.1|Name=mRNA_S-dermatodea_contig935.17393.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at S-dermatodea_contig935:158..968+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCAGGATCAGGATCAGCATCAGCATCAGCATCATCATCAACACCGG
CATCACCATCAGCAGCACAAAGGAACGAACGCAAAGCAGGCGAGCGCGCG
ACCACCAGCCACGACAAGCTCATCCTCCTCCTGCCTATCCATCCATCCTG
CGTTATCATAATGCAAGGACAATTCCCCGTGTACTCCTCTCTCACACCCA
CGCACGAACTATCATTCCATGCTTTGCTCGCCAATGTCTCTCTCTGACCT
TGCGCCACTGTTCGAAGATTACAACCTTACAGAAGGGTTGTGTGACTCAA
AAACGCGAACTGTCACCCTCAACCCTGCTTCACAATCCGCGCCCCCCCAA
ACATCCTCGTTATACTTTCAGCCGACGCAGCCCATTTTTCTTCTGTAGTC
GAGTACAAGTTGCTTGGTTTTGAATGATCAGGATCAGGATCAGCATCAGC
ATCAGCATCATCATCAACACCGGCATCACCATCAGCAGCACAAAGGAACG
AACGCAAAGCAGGCGAGCGCGCGACCACCAGCCACGACAAGCTCATCCTC
CTCCTGCCTATCCATCCATCCTGCGTTATCATAATGCAAGGACAATTCCC
CGTGTACTCCTCTCTCACACCCACGCACGAACTATCATTCCATGCTTTGC
TCGCCAATGTCTCTCTCTGACCTTGCGCCACTGTTCGAAGATTACAACCT
TACAGAAGGGTTGTGTGACTCAAAAACGCGAACTGTCACCCTCAACCCTG
CTTCACAATCCGCGCCCCCCCAAACATCCTCGTTATACTTTCAGCCGACG
CAGCCCATTTTTCTTCTGTAGTCGAGTACAAGTTGCTTGGTTTTGA
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