mRNA_S-dermatodea_contig93435.17390.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93435.17390.1
Unique NamemRNA_S-dermatodea_contig93435.17390.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.950e-46
Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 1
Query:   16 MQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPWCVL 255
            ++VEYANDL+IS FWSGFP+PPKNFMDGSSFDRTKPC F DPEYYRTCGWNLNN+PFWPGSVLRFFRTH+NGLTAPW  L
Sbjct:  525 LEVEYANDLNISTFWSGFPMPPKNFMDGSSFDRTKPCDFDDPEYYRTCGWNLNNLPFWPGSVLRFFRTHINGLTAPWLYL 604          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: A0A835Z4N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N8_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.250e-18
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   22 VEYANDLDISEFWSGFPLPPKNFMDGSSFDRT-KPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            VEY ND+D++EFWSGFP PP   M  ++ +   +   F   +YY   GWNL N+PFW GSVLR+FR  + G+  PW
Sbjct:  363 VEYGNDIDVNEFWSGFPAPPPQHMVAAAGEWAGRALDFAHKDYYAKSGWNLCNLPFWRGSVLRWFRHKITGVNVPW 438          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: A0A7S3ZPX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPX7_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.480e-18
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   22 VEYANDLDISEFWSGFPL-PPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPWCVL 255
            V+Y ND+D +E+WSGFP  PP+  +   + DR +P  +   EYY   GWNLNNI  WPGSVLR++   V+G+T+PW  L
Sbjct:  148 VDYGNDVDAAEYWSGFPRGPPQPELCAENLDRCEPFSY---EYYARSGWNLNNIARWPGSVLRYYEEPVSGVTSPWLYL 223          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: F0XYW6_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW6_AURAN)

HSP 1 Score: 85.9 bits (211), Expect = 8.700e-18
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1
Query:   13 AMQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPWCVL 255
            A++VEY ND+D+ EFWSGFP P  +  D  S  + +   +    YY   GWNLNNI  WPGSVLR F   V G+T+PW  L
Sbjct:   52 AVEVEYGNDVDVHEFWSGFPKPDGDRAD-LSVAKLEGVPYASDAYYAATGWNLNNIASWPGSVLRHFTVSVPGVTSPWLYL 131          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: A0A329SG71_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SG71_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.870e-15
Identity = 38/77 (49.35%), Postives = 47/77 (61.04%), Query Frame = 1
Query:   16 MQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            ++VEYANDLDIS+  SGF    K F    +    +P  F DPEYYR  GWNLNN+P   GS+LR     +NG+  PW
Sbjct:  160 VEVEYANDLDISQVGSGFLRSKKRFA-SRTMKGKQPIDFADPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGINVPW 235          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: T0QVD8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QVD8_SAPDV)

HSP 1 Score: 78.2 bits (191), Expect = 5.380e-15
Identity = 35/82 (42.68%), Postives = 46/82 (56.10%), Query Frame = 1
Query:    1 ASLHAMQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            A   A +VEYAN++ I +  SGFP PP +         ++   F DP YY T  WNLNN+PF  GS+LR+    + GL  PW
Sbjct:  206 APSEATEVEYANNVSIKDLGSGFPTPPTHAKASLQAKASEDVDFADPTYYATTAWNLNNLPFAAGSLLRYVDASIEGLNVPW 287          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: W2QF68_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=W2QF68_PHYPN)

HSP 1 Score: 77.8 bits (190), Expect = 7.390e-15
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1
Query:   16 MQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            ++VEYANDLDIS+  SGF    K F    S    +   F DPEYYR  GWNLNN+P   GS+LR     +NG+  PW
Sbjct:  232 VEVEYANDLDISQVGSGFLRSKKRFA-SQSMKGKESIDFSDPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGINVPW 307          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: W7UAB4_9STRA (Lysine-specific demethylase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAB4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.450e-15
Identity = 40/99 (40.40%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    1 ASLHAMQVEYANDLDISEFWSGFPLPPKNFM---DGSSFDRT-----------KPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPWCVL 255
            A+   + VEY NDLD   + SGFP      M   +GS+ DR            +      PEYY  CGWN+NN+P WPGSVLR+ R  + G+  PW  L
Sbjct:  313 AAEEVVDVEYGNDLDTLTYGSGFPRATDLMMPRSEGSTEDRFAIETIGKDREGRGRLLGTPEYYERCGWNMNNLPLWPGSVLRYIRAPLKGVNVPWLYL 411          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: D0MS65_PHYIT (Histone demethylase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MS65_PHYIT)

HSP 1 Score: 75.5 bits (184), Expect = 4.790e-14
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   13 AMQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            ++QVEYANDLDIS+  SGF    K +   ++    +   F DPEYYR  GWNLNN+P   GS+LR     +NG+  PW
Sbjct:  226 SVQVEYANDLDISQVGSGFLRSKKRYASQATKGE-EAIDFADPEYYRNTGWNLNNLPDAYGSLLRHLGAAINGVNVPW 302          
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Match: A0A8K1CC57_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC57_PYTOL)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-13
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1
Query:   13 AMQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGWNLNNIPFWPGSVLRFFRTHVNGLTAPW 246
            A+QVEYANDLD ++  SGFP     F   +    +    F DP+YY    WNLNN+PF  GS+LR   T +NG+  PW
Sbjct:  244 AVQVEYANDLDTTQVGSGFPRATNPFAAVAKGKES--VDFFDPKYYEHTAWNLNNLPFAHGSLLRHMHTAINGINVPW 319          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93435.17390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFA3_ECTSI7.950e-4686.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4N8_9STRA4.250e-1848.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3ZPX7_9STRA5.480e-1849.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0XYW6_AURAN8.700e-1849.38JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A329SG71_9STRA2.870e-1549.35Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
T0QVD8_SAPDV5.380e-1542.68Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W2QF68_PHYPN7.390e-1549.35Uncharacterized protein n=9 Tax=Phytophthora TaxID... [more]
W7UAB4_9STRA7.450e-1540.40Lysine-specific demethylase n=2 Tax=Monodopsidacea... [more]
D0MS65_PHYIT4.790e-1447.44Histone demethylase, putative n=2 Tax=Phytophthora... [more]
A0A8K1CC57_PYTOL1.230e-1346.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93435contigS-dermatodea_contig93435:119..373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue1.9e-39
Seed eggNOG ortholog2880.D8LFA3
KEGG koko:K11446
EggNOG free text desc.histone lysine demethylation
EggNOG OGsCOG0055@1,KOG1246@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size255
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.8757112-CDS-S-dermatodea_contig93435:118..3581622925401.8757112-CDS-S-dermatodea_contig93435:118..358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93435 119..358 -
1694079908.970293-CDS-S-dermatodea_contig93435:118..3581694079908.970293-CDS-S-dermatodea_contig93435:118..358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93435 119..358 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925401.8876245-UTR-S-dermatodea_contig93435:358..3731622925401.8876245-UTR-S-dermatodea_contig93435:358..373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93435 359..373 -
1694079908.9828796-UTR-S-dermatodea_contig93435:358..3731694079908.9828796-UTR-S-dermatodea_contig93435:358..373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93435 359..373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93435.17390.1prot_S-dermatodea_contig93435.17390.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93435 119..358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93435.17390.1

>prot_S-dermatodea_contig93435.17390.1 ID=prot_S-dermatodea_contig93435.17390.1|Name=mRNA_S-dermatodea_contig93435.17390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
MQVEYANDLDISEFWSGFPLPPKNFMDGSSFDRTKPCRFQDPEYYRTCGW
NLNNIPFWPGSVLRFFRTHVNGLTAPWCVL
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mRNA from alignment at S-dermatodea_contig93435:119..373-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93435.17390.1 ID=mRNA_S-dermatodea_contig93435.17390.1|Name=mRNA_S-dermatodea_contig93435.17390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig93435:119..373- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTTCGCTTCATGCCATGCAGGTGGAGTACGCGAACGACCTGGACATCTC TGAGTTCTGGAGCGGGTTCCCCCTTCCGCCTAAGAACTTCATGGACGGCT CGTCCTTCGACCGCACGAAGCCGTGCCGCTTTCAAGATCCAGAGTACTAC CGCACTTGCGGCTGGAACCTGAACAACATACCCTTCTGGCCTGGATCTGT CCTCAGATTCTTTCGCACGCACGTCAATGGGCTCACGGCTCCCTGGTGCG TTTTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig93435:119..373-

>mRNA_S-dermatodea_contig93435.17390.1 ID=mRNA_S-dermatodea_contig93435.17390.1|Name=mRNA_S-dermatodea_contig93435.17390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig93435:119..373- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGTGGAGTACGCGAACGACCTGGACATCTCTGAGTTCTGGAGCGG
GTTCCCCCTTCCGCCTAAGAACTTCATGGACGGCTCGTCCTTCGACCGCA
CGAAGCCGTGCCGCTTTCAAGATCCAGAGTACTACCGCACTTGCGGCTGG
AACCTGAACAACATACCCTTCTGGCCTGGATCTGTCCTCAGATTCTTTCG
CACGCACGTCAATGGGCTCACGGCTCCCTGGTGCGTTTTGATGCAGGTGG
AGTACGCGAACGACCTGGACATCTCTGAGTTCTGGAGCGGGTTCCCCCTT
CCGCCTAAGAACTTCATGGACGGCTCGTCCTTCGACCGCACGAAGCCGTG
CCGCTTTCAAGATCCAGAGTACTACCGCACTTGCGGCTGGAACCTGAACA
ACATACCCTTCTGGCCTGGATCTGTCCTCAGATTCTTTCGCACGCACGTC
AATGGGCTCACGGCTCCCTGGTGCGTTTTG
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