mRNA_S-dermatodea_contig93189.17370.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig93189.17370.1
Unique NamemRNA_S-dermatodea_contig93189.17370.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig93189.17370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig93189contigS-dermatodea_contig93189:4..566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size565
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.4599974-CDS-S-dermatodea_contig93189:3..4111622925400.4599974-CDS-S-dermatodea_contig93189:3..411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93189 4..411 +
1694079908.0229492-CDS-S-dermatodea_contig93189:3..4111694079908.0229492-CDS-S-dermatodea_contig93189:3..411Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig93189 4..411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925400.4694552-UTR-S-dermatodea_contig93189:411..5661622925400.4694552-UTR-S-dermatodea_contig93189:411..566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93189 412..566 +
1694079908.0321286-UTR-S-dermatodea_contig93189:411..5661694079908.0321286-UTR-S-dermatodea_contig93189:411..566Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig93189 412..566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig93189.17370.1prot_S-dermatodea_contig93189.17370.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig93189 4..411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig93189.17370.1

>prot_S-dermatodea_contig93189.17370.1 ID=prot_S-dermatodea_contig93189.17370.1|Name=mRNA_S-dermatodea_contig93189.17370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
NGRVRRLPSDSSVTSWNALFWAVAVNFSPELSSVAASPANLSGLAQKQYS
YPFLPLFQQYKYDTAQWSAGGRFPDSKRRTANNAKTAWSTTTTTTTTELL
YVVVRVETQNTAVIEARNNRSNSKTARMLLLLIQL*
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mRNA from alignment at S-dermatodea_contig93189:4..566+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig93189.17370.1 ID=mRNA_S-dermatodea_contig93189.17370.1|Name=mRNA_S-dermatodea_contig93189.17370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=563bp|location=Sequence derived from alignment at S-dermatodea_contig93189:4..566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACGGGCGGGTGCGGCGGTTGCCCTCTGATTCAAGTGTCACCTCATGGAA
TGCATTATTTTGGGCTGTTGCCGTTAATTTCTCCCCCGAACTTTCTTCTG
TTGCGGCCTCGCCGGCAAACCTCTCTGGCCTTGCACAAAAACAGTATAGT
TATCCATTCCTCCCATTATTCCAGCAATACAAGTACGACACGGCGCAATG
GTCAGCCGGGGGGCGTTTCCCTGACAGCAAGCGCCGAACGGCCAACAACG
CAAAAACAGCGTGGTCCACCACCACAACCACCACCACCACAGAGTTACTG
TATGTAGTAGTCCGTGTCGAAACACAAAACACGGCAGTCATCGAAGCCCG
CAACAACCGCAGCAACTCTAAAACAGCACGGATGCTCCTACTATTGATAC
AACTTTAGTACACAACAAAGCAATATACAACATGGAAGCAGTACTCGATC
GTATCGTCGACAAAACAGAGAAAAACAAAAAAGAAGAAGAGAGAGGCAAC
AATCAACCACTCTAATGTCTTGTTCTTGTTACTACATACAATGTACTCTT
TAATAAGTTAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig93189:4..566+

>mRNA_S-dermatodea_contig93189.17370.1 ID=mRNA_S-dermatodea_contig93189.17370.1|Name=mRNA_S-dermatodea_contig93189.17370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig93189:4..566+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AACGGGCGGGTGCGGCGGTTGCCCTCTGATTCAAGTGTCACCTCATGGAA
TGCATTATTTTGGGCTGTTGCCGTTAATTTCTCCCCCGAACTTTCTTCTG
TTGCGGCCTCGCCGGCAAACCTCTCTGGCCTTGCACAAAAACAGTATAGT
TATCCATTCCTCCCATTATTCCAGCAATACAAGTACGACACGGCGCAATG
GTCAGCCGGGGGGCGTTTCCCTGACAGCAAGCGCCGAACGGCCAACAACG
CAAAAACAGCGTGGTCCACCACCACAACCACCACCACCACAGAGTTACTG
TATGTAGTAGTCCGTGTCGAAACACAAAACACGGCAGTCATCGAAGCCCG
CAACAACCGCAGCAACTCTAAAACAGCACGGATGCTCCTACTATTGATAC
AACTTTAGAACGGGCGGGTGCGGCGGTTGCCCTCTGATTCAAGTGTCACC
TCATGGAATGCATTATTTTGGGCTGTTGCCGTTAATTTCTCCCCCGAACT
TTCTTCTGTTGCGGCCTCGCCGGCAAACCTCTCTGGCCTTGCACAAAAAC
AGTATAGTTATCCATTCCTCCCATTATTCCAGCAATACAAGTACGACACG
GCGCAATGGTCAGCCGGGGGGCGTTTCCCTGACAGCAAGCGCCGAACGGC
CAACAACGCAAAAACAGCGTGGTCCACCACCACAACCACCACCACCACAG
AGTTACTGTATGTAGTAGTCCGTGTCGAAACACAAAACACGGCAGTCATC
GAAGCCCGCAACAACCGCAGCAACTCTAAAACAGCACGGATGCTCCTACT
ATTGATACAACTTTAG
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