mRNA_S-dermatodea_contig9301.17358.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9301.17358.1
Unique NamemRNA_S-dermatodea_contig9301.17358.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9301.17358.1 vs. uniprot
Match: D8LQQ0_ECTSI (GPI ethanolamine phosphate transferase 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQQ0_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.810e-31
Identity = 93/193 (48.19%), Postives = 102/193 (52.85%), Query Frame = 1 
Query:    1 QFSRLQYSAAFVGFDEFDFKIGGLLLFLNTFGTETLAALSLSLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDS--SENTRRPASAHDQREEADSFNRSRRTPPIGRDEWNSWTNSPGDGLKAYTSSAAAAADASDAAEFLSTMERLSGLILLLSSARTLLSAANVSVQRGHLMLWAVFAPKFVFDATMQ 573
            QFSRLQYSAAFVGFDEFDFK+GG+LLFLNTFGTE LAAL+L L A                               S  S  + RP S                    GR + N   ++  D                +    LS MERLSGL LLLS+ RT LSAANVSVQRGHLMLWAVFAPKFVFDATMQ
Sbjct: 1116 QFSRLQYSAAFVGFDEFDFKVGGVLLFLNTFGTEILAALALPLAAAAAAASGVSQDAAPPVLPEAVSGSSRPNDRQSLSSPPSPRPHSV------------------AGRWDGNHPDDAGNDAAXXXXXXXXXXXXXXETTSMLSAMERLSGLTLLLSAIRTFLSAANVSVQRGHLMLWAVFAPKFVFDATMQ 1290
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BLAST of mRNA_S-dermatodea_contig9301.17358.1 vs. uniprot
Match: A0A4D9CYS9_9STRA (GPI ethanolamine phosphate transferase 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CYS9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 5.790e-10
Identity = 61/190 (32.11%), Postives = 75/190 (39.47%), Query Frame = 1 
Query:    1 QFSRLQYSAAFVGFDEFDFKIGGLLLFLNTFGTETLAALSLSLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDSSENTRRPASAHDQREEADSFNRSRRTPPIGRDEWNSWTNSPGDGLKAYTSSAAAAADASDAAEFLSTMERLSGLILLLSSARTLLSAANVSVQRGHLMLWAVFAPKFVFDATM 570
            QF+RLQYS+AFVGFDEF F IGG LLFLNTFGTE L  L L                                              HD                                         + A +S +A  L ++    G  LL+S  R LL+   V +QR HLM+WA+FAPKF+FDA +
Sbjct: 1028 QFNRLQYSSAFVGFDEFSFVIGGCLLFLNTFGTELLVLLLLG---------------------------------------------HD---------------------------------------VLSCASSSYSASLLPSL----GTKLLVSDFRCLLTTLCVLLQRRHLMVWAIFAPKFIFDACL 1129
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9301.17358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQQ0_ECTSI1.810e-3148.19GPI ethanolamine phosphate transferase 3 n=2 Tax=E... [more]
A0A4D9CYS9_9STRA5.790e-1032.11GPI ethanolamine phosphate transferase 3 n=2 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9301contigS-dermatodea_contig9301:2654..3869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue7.2e-29
Seed eggNOG ortholog2880.D8LQQ0
Preferred namePIGO
KEGG rclassRC00017
KEGG koko:K05288
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016772,GO:0016780,GO:0019538,GO:0019637,GO:0031224,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0051377,GO:0071704,GO:0090407,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.mannose-ethanolamine phosphotransferase activity
EggNOG OGsCOG1524@1,KOG2126@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size575
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925399.7707698-CDS-S-dermatodea_contig9301:2654..31901622925399.7707698-CDS-S-dermatodea_contig9301:2654..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9301 2655..3190 -
1694079907.6502461-CDS-S-dermatodea_contig9301:2654..31901694079907.6502461-CDS-S-dermatodea_contig9301:2654..3190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9301 2655..3190 -
1622925399.782108-CDS-S-dermatodea_contig9301:3832..38691622925399.782108-CDS-S-dermatodea_contig9301:3832..3869Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9301 3833..3869 -
1694079907.6624742-CDS-S-dermatodea_contig9301:3832..38691694079907.6624742-CDS-S-dermatodea_contig9301:3832..3869Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9301 3833..3869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9301.17358.1prot_S-dermatodea_contig9301.17358.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9301 2655..3869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9301.17358.1

>prot_S-dermatodea_contig9301.17358.1 ID=prot_S-dermatodea_contig9301.17358.1|Name=mRNA_S-dermatodea_contig9301.17358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=191bp
QFSRLQYSAAFVGFDEFDFKIGGLLLFLNTFGTETLAALSLSLLAAAITT
TKPPPVPPRSPTPPPPPPPPPPPPLDSSENTRRPASAHDQREEADSFNRS
RRTPPIGRDEWNSWTNSPGDGLKAYTSSAAAAADASDAAEFLSTMERLSG
LILLLSSARTLLSAANVSVQRGHLMLWAVFAPKFVFDATMQ
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mRNA from alignment at S-dermatodea_contig9301:2654..3869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9301.17358.1 ID=mRNA_S-dermatodea_contig9301.17358.1|Name=mRNA_S-dermatodea_contig9301.17358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1216bp|location=Sequence derived from alignment at S-dermatodea_contig9301:2654..3869- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCAGCAGACTGCAGTACTCGGCGGCGTTCGTTGGTGAGTGGCATGC
GTTCGCGTGTGCATGCGTGTGAGTGCGTGCTTACGGACGGTGAATAGCTC
GTGTAGTACGCGTGGGGGGGGAGTTGCCCGGATGTTCGAGGACGATCGGG
AGGTTTGTTTCTGGTTGTGTGTCATTCGAGGGCGGGCTTCAAAGGTTATT
ACGCTCCGGTGACGGAAACTATATTATTTTTATTACGGAGGTCTAATAAA
ATAAAAACAAATGTTGTTTTAGGCTATATGTGATAGACCTTTTTCTTTAT
TGATTTGAATTCATTGCAGTTAATTTTGTTTGTATTAAATTTATGTAGCA
CACATGCAGCCGAGCGGATCCGCCGGGGTGAATTTGGTTTTGGGTGGTCG
TGGTCGGGACATTCGGTCCTGAGTAGTGTGTACCCCTGTCATAGGCACCG
TATGCATTGCACATGTATTGTCTCTGTTTAATTTATTGGCCGGTGGTTTT
CGTACCGAGTCCTCTCCCCTGCGATGCATTCGCCCCCCCACCCCCCCCCC
TTTTGTTCGTGCGTGCAACCGAGGTTTGCGTGCAAGCATAACGCCAAGCC
ACGGCGGCACACAGTACCCCCGCCTCGCCGCGCCCGTCTTTTTCACAGAT
AATTTCCCTCTTATTTTTACGTACGCCAGGCTTCGACGAGTTCGACTTCA
AGATCGGCGGTCTCCTCCTCTTCCTCAACACCTTCGGAACAGAGACCCTC
GCCGCGTTGTCCCTCTCCCTGCTTGCAGCAGCCATCACCACCACCAAGCC
GCCGCCGGTTCCGCCGCGGTCACCAACTCCACCACCACCACCACCACCAC
CACCACCACCACCATTAGATAGCTCAGAAAATACGCGACGACCTGCATCG
GCGCATGATCAGCGCGAGGAGGCGGACTCGTTCAACCGTTCGCGGAGAAC
ACCACCGATAGGCCGGGATGAATGGAACTCATGGACCAACAGCCCAGGCG
ACGGGCTCAAAGCATATACTTCCTCTGCCGCCGCTGCCGCCGACGCCTCC
GATGCCGCCGAATTTTTGTCGACCATGGAACGGCTGTCCGGGCTGATCCT
CCTCCTAAGCTCCGCGAGAACTCTCCTCTCCGCCGCCAACGTCTCGGTTC
AGCGCGGCCACCTCATGCTCTGGGCCGTCTTCGCCCCCAAGTTCGTCTTC
GACGCCACCATGCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9301:2654..3869-

>mRNA_S-dermatodea_contig9301.17358.1 ID=mRNA_S-dermatodea_contig9301.17358.1|Name=mRNA_S-dermatodea_contig9301.17358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at S-dermatodea_contig9301:2654..3869- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTTCAGCAGACTGCAGTACTCGGCGGCGTTCGTTGCAGTTCAGCAGAC
TGCAGTACTCGGCGGCGTTCGTTGGCTTCGACGAGTTCGACTTCAAGATC
GGCGGTCTCCTCCTCTTCCTCAACACCTTCGGAACAGAGACCCTCGCCGC
GTTGTCCCTCTCCCTGCTTGCAGCAGCCATCACCACCACCAAGCCGCCGC
CGGTTCCGCCGCGGTCACCAACTCCACCACCACCACCACCACCACCACCA
CCACCACCATTAGATAGCTCAGAAAATACGCGACGACCTGCATCGGCGCA
TGATCAGCGCGAGGAGGCGGACTCGTTCAACCGTTCGCGGAGAACACCAC
CGATAGGCCGGGATGAATGGAACTCATGGACCAACAGCCCAGGCGACGGG
CTCAAAGCATATACTTCCTCTGCCGCCGCTGCCGCCGACGCCTCCGATGC
CGCCGAATTTTTGTCGACCATGGAACGGCTGTCCGGGCTGATCCTCCTCC
TAAGCTCCGCGAGAACTCTCCTCTCCGCCGCCAACGTCTCGGTTCAGCGC
GGCCACCTCATGCTCTGGGCCGTCTTCGCCCCCAAGTTCGTCTTCGACGC
CACCATGCAGGCTTCGACGAGTTCGACTTCAAGATCGGCGGTCTCCTCCT
CTTCCTCAACACCTTCGGAACAGAGACCCTCGCCGCGTTGTCCCTCTCCC
TGCTTGCAGCAGCCATCACCACCACCAAGCCGCCGCCGGTTCCGCCGCGG
TCACCAACTCCACCACCACCACCACCACCACCACCACCACCACCATTAGA
TAGCTCAGAAAATACGCGACGACCTGCATCGGCGCATGATCAGCGCGAGG
AGGCGGACTCGTTCAACCGTTCGCGGAGAACACCACCGATAGGCCGGGAT
GAATGGAACTCATGGACCAACAGCCCAGGCGACGGGCTCAAAGCATATAC
TTCCTCTGCCGCCGCTGCCGCCGACGCCTCCGATGCCGCCGAATTTTTGT
CGACCATGGAACGGCTGTCCGGGCTGATCCTCCTCCTAAGCTCCGCGAGA
ACTCTCCTCTCCGCCGCCAACGTCTCGGTTCAGCGCGGCCACCTCATGCT
CTGGGCCGTCTTCGCCCCCAAGTTCGTCTTCGACGCCACCATGCAG
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