mRNA_S-dermatodea_contig12841.1733.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12841.1733.1
Unique NamemRNA_S-dermatodea_contig12841.1733.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: D7FVR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR0_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.040e-21
Identity = 42/51 (82.35%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEMSMPMSTDG+RDMFWR +WDP  QAAQC EQFGVSP EGW A EYGG
Sbjct:  408 ACTEMSMPMSTDGKRDMFWRNDWDPVAQAAQCMEQFGVSPGEGWGAAEYGG 458          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A6H5KGG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGG4_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.800e-21
Identity = 41/51 (80.39%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEMSMPMSTDG+RDMFWR +WDP  QAAQC EQ+GVSP EGW A EYGG
Sbjct:  273 ACTEMSMPMSTDGKRDMFWRNDWDPLAQAAQCMEQYGVSPGEGWGAAEYGG 323          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A7S4D8W0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8W0_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 5.750e-13
Identity = 31/50 (62.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    4 CTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            CTEM MP+STDG  DMFW + + P  +AA+C  Q+GV PRE WAAT+YGG
Sbjct:  162 CTEMFMPLSTDGVEDMFWPSPFCPDAEAARCWTQWGVRPRETWAATQYGG 211          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A061QZ18_9CHLO (Lysosomal Pro-X carboxypeptidase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZ18_9CHLO)

HSP 1 Score: 69.3 bits (168), Expect = 1.620e-12
Identity = 31/51 (60.78%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            +CTEM MPMS DG RDMFW   W     AA CRE+FGV P   WAAT++GG
Sbjct:  200 SCTEMLMPMSRDGVRDMFWEQPWSRERFAAGCRERFGVEPIRNWAATQWGG 250          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: C1N1S0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N1S0_MICPC)

HSP 1 Score: 65.9 bits (159), Expect = 3.210e-12
Identity = 26/45 (57.78%), Postives = 36/45 (80.00%), Query Frame = 1
Query:   19 MPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            MP S DGERDMFW+  W+ +EQ A+C +++GV+PR GWA T++GG
Sbjct:    1 MPSSRDGERDMFWKQPWNESEQIARCEKRWGVTPRVGWATTQFGG 45          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A8C4FU37_9TELE (Lysosomal Pro-X carboxypeptidase-like n=4 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4FU37_9TELE)

HSP 1 Score: 60.8 bits (146), Expect = 1.660e-9
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEM MPM TDG +DMF   EWD    + +C  +FGV PR  WA T YGG
Sbjct:  351 ACTEMVMPMCTDGVQDMFEPEEWDFQAFSDECFHEFGVRPRPDWAETAYGG 401          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A3Q2PIB6_FUNHE (Prolylcarboxypeptidase n=1 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2PIB6_FUNHE)

HSP 1 Score: 59.7 bits (143), Expect = 4.240e-9
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEM MPM TDG +DMF   EW+    + +C   FGV PR  WA T YGG
Sbjct:  337 ACTEMVMPMCTDGVQDMFEPEEWNFQAYSDECNAMFGVRPRADWAGTVYGG 387          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A3B3QIV4_9TELE (Prolylcarboxypeptidase n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QIV4_9TELE)

HSP 1 Score: 59.7 bits (143), Expect = 4.250e-9
Identity = 29/51 (56.86%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEM MPM TDG +DMF    WD    + +C +QFGV PR  WA T YGG
Sbjct:  405 ACTEMVMPMCTDGVQDMFEPQPWDFQAFSEECYKQFGVRPRIDWAITMYGG 455          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A8C8A4K5_9TELE (Prolylcarboxypeptidase (angiotensinase C) n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C8A4K5_9TELE)

HSP 1 Score: 59.3 bits (142), Expect = 4.790e-9
Identity = 28/51 (54.90%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEM MPM TDG +DMF   +W+    + +C   FGV PRE WA T YGG
Sbjct:  154 ACTEMVMPMCTDGVQDMFEPEDWNFQAFSDECYSMFGVRPREDWAGTLYGG 204          
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Match: A0A669CTA5_ORENI (Prolylcarboxypeptidase (angiotensinase C) n=3 Tax=Oreochromis TaxID=8139 RepID=A0A669CTA5_ORENI)

HSP 1 Score: 59.3 bits (142), Expect = 5.810e-9
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 ACTEMSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG 153
            ACTEM MPM TDG +DMF   EW+    + +C+  FG+ PR  WA T YGG
Sbjct:  363 ACTEMVMPMCTDGVQDMFEPEEWNFQAFSDECKAMFGIRPRADWAGTVYGG 413          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12841.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR0_ECTSI1.040e-2182.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGG4_9PHAE2.800e-2180.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4D8W0_HETAK5.750e-1362.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A061QZ18_9CHLO1.620e-1260.78Lysosomal Pro-X carboxypeptidase n=2 Tax=Tetraselm... [more]
C1N1S0_MICPC3.210e-1257.78Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A8C4FU37_9TELE1.660e-956.86Lysosomal Pro-X carboxypeptidase-like n=4 Tax=Dent... [more]
A0A3Q2PIB6_FUNHE4.240e-954.90Prolylcarboxypeptidase n=1 Tax=Fundulus heteroclit... [more]
A0A3B3QIV4_9TELE4.250e-956.86Prolylcarboxypeptidase n=1 Tax=Paramormyrops kings... [more]
A0A8C8A4K5_9TELE4.790e-954.90Prolylcarboxypeptidase (angiotensinase C) n=1 Tax=... [more]
A0A669CTA5_ORENI5.810e-952.94Prolylcarboxypeptidase (angiotensinase C) n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12841contigS-dermatodea_contig12841:517..669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue6.5e-16
Seed eggNOG ortholog2880.D7FVR0
KEGG koko:K01285
KEGG Pathwayko04614,ko04974,map04614,map04974
EggNOG free text desc.dipeptidyl-peptidase activity
EggNOG OGsKOG2183@1,KOG2183@2759
EC3.4.16.2
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size141
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.3000016-UTR-S-dermatodea_contig12841:516..5281622924264.3000016-UTR-S-dermatodea_contig12841:516..528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12841 517..528 +
1694079135.3805587-UTR-S-dermatodea_contig12841:516..5281694079135.3805587-UTR-S-dermatodea_contig12841:516..528Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12841 517..528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.3109596-CDS-S-dermatodea_contig12841:528..6691622924264.3109596-CDS-S-dermatodea_contig12841:528..669Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12841 529..669 +
1694079135.3923619-CDS-S-dermatodea_contig12841:528..6691694079135.3923619-CDS-S-dermatodea_contig12841:528..669Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12841 529..669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12841.1733.1prot_S-dermatodea_contig12841.1733.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12841 529..669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12841.1733.1

>prot_S-dermatodea_contig12841.1733.1 ID=prot_S-dermatodea_contig12841.1733.1|Name=mRNA_S-dermatodea_contig12841.1733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=47bp
MSMPMSTDGERDMFWRAEWDPAEQAAQCREQFGVSPREGWAATEYGG
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mRNA from alignment at S-dermatodea_contig12841:517..669+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12841.1733.1 ID=mRNA_S-dermatodea_contig12841.1733.1|Name=mRNA_S-dermatodea_contig12841.1733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at S-dermatodea_contig12841:517..669+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCATGCACCGAGATGTCCATGCCGATGTCAACAGACGGCGAGCGAGATAT GTTCTGGCGGGCCGAGTGGGACCCGGCGGAACAGGCGGCGCAGTGTCGGG AACAGTTCGGGGTATCCCCTCGGGAGGGCTGGGCGGCGACGGAGTACGGC GGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12841:517..669+

>mRNA_S-dermatodea_contig12841.1733.1 ID=mRNA_S-dermatodea_contig12841.1733.1|Name=mRNA_S-dermatodea_contig12841.1733.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at S-dermatodea_contig12841:517..669+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCATGCCGATGTCAACAGACGGCGAGCGAGATATGTTCTGGCGGGC
CGAGTGGGACCCGGCGGAACAGGCGGCGCAGTGTCGGGAACAGTTCGGGG
TATCCCCTCGGGAGGGCTGGGCGGCGACGGAGTACGGCGGCATGTCCATG
CCGATGTCAACAGACGGCGAGCGAGATATGTTCTGGCGGGCCGAGTGGGA
CCCGGCGGAACAGGCGGCGCAGTGTCGGGAACAGTTCGGGGTATCCCCTC
GGGAGGGCTGGGCGGCGACGGAGTACGGCGGC
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