mRNA_S-dermatodea_contig9266.17323.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: D7FM71_ECTSI (60S ribosomal protein L38 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM71_ECTSI) HSP 1 Score: 139 bits (349), Expect = 1.220e-41 Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKK +
Sbjct: 2 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKQL 71
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: A0A836CJ21_9STRA (Ribosomal protein L38 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ21_9STRA) HSP 1 Score: 112 bits (281), Expect = 2.670e-31 Identity = 58/70 (82.86%), Postives = 61/70 (87.14%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQIHDIRDFLQKARR+DAKSVKIK K TKFKIRCSRYLYTLCV DK+KADKLTQSLPPGL +K I
Sbjct: 2 PKQIHDIRDFLQKARRKDAKSVKIK--KTAEVTKFKIRCSRYLYTLCVADKDKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: A0A485KGK6_9STRA (Aste57867_4412 protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KGK6_9STRA) HSP 1 Score: 105 bits (262), Expect = 2.120e-28 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KTAQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: W2IQQ0_PHYPR (60S ribosomal protein L38 n=16 Tax=Peronosporaceae TaxID=4777 RepID=W2IQQ0_PHYPR) HSP 1 Score: 105 bits (261), Expect = 3.010e-28 Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: A0A067CFE6_SAPPC (60S ribosomal protein L38 n=3 Tax=Oomycota TaxID=4762 RepID=A0A067CFE6_SAPPC) HSP 1 Score: 105 bits (261), Expect = 3.010e-28 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR+DA+SVKIK K KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct: 2 PKQITDIRDFLQKARRKDARSVKIK--KTPQVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: A0A1E7ETU4_9STRA (Ribosomal protein L38 n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A1E7ETU4_9STRA) HSP 1 Score: 104 bits (260), Expect = 4.270e-28 Identity = 56/70 (80.00%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR DAK VKIK K TKFKIRCSR+LYTLCVTD EKADKLTQSLPPGL +K I
Sbjct: 2 PKQITDIRDFLQKARRSDAKLVKIK--KRDSQTKFKIRCSRFLYTLCVTDAEKADKLTQSLPPGLQRKSI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: M4BFU5_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFU5_HYAAE) HSP 1 Score: 105 bits (261), Expect = 5.110e-28 Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPGL +K I
Sbjct: 21 PKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPGLQRKDI 88
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: F0Y0E5_AURAN (Ribosomal protein L38 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0E5_AURAN) HSP 1 Score: 102 bits (255), Expect = 2.470e-27 Identity = 55/70 (78.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PK+I DIRDFLQKARRRDAKSVKIK K KFKIRCSRYLYTL V+D EKADKLTQSLPPGL +K I
Sbjct: 2 PKEISDIRDFLQKARRRDAKSVKIKKTKGV--VKFKIRCSRYLYTLRVSDTEKADKLTQSLPPGLQRKDI 69
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: K3WQ98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ98_GLOUD) HSP 1 Score: 102 bits (254), Expect = 4.030e-27 Identity = 55/70 (78.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 4 PKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPGLHKKII 213
PKQI DIRDFLQKARR+DA+SVKIK KA KFKIRCS+YLYTL VTD EKADKLTQSLPPGL +K I
Sbjct: 7 PKQITDIRDFLQKARRKDARSVKIK--KADKVVKFKIRCSKYLYTLVVTDAEKADKLTQSLPPGLQRKDI 74
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Match: H3G589_PHYRM (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G589_PHYRM) HSP 1 Score: 101 bits (252), Expect = 6.050e-27 Identity = 53/65 (81.54%), Postives = 57/65 (87.69%), Query Frame = 1
Query: 1 QPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTDKEKADKLTQSLPPG 195
QPKQI DIRDFLQKARR+DA+SVKIK K+ KFKIRCS+YLYTLCVTD EKADKLTQSLPPG
Sbjct: 1 QPKQITDIRDFLQKARRKDARSVKIK--KSDKVVKFKIRCSKYLYTLCVTDTEKADKLTQSLPPG 63 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9266.17323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9266.17323.1 >prot_S-dermatodea_contig9266.17323.1 ID=prot_S-dermatodea_contig9266.17323.1|Name=mRNA_S-dermatodea_contig9266.17323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp QPKQIHDIRDFLQKARRRDAKSVKIKNNKATHSTKFKIRCSRYLYTLCVTback to top mRNA from alignment at S-dermatodea_contig9266:3649..7835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9266.17323.1 ID=mRNA_S-dermatodea_contig9266.17323.1|Name=mRNA_S-dermatodea_contig9266.17323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4187bp|location=Sequence derived from alignment at S-dermatodea_contig9266:3649..7835- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9266:3649..7835- >mRNA_S-dermatodea_contig9266.17323.1 ID=mRNA_S-dermatodea_contig9266.17323.1|Name=mRNA_S-dermatodea_contig9266.17323.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig9266:3649..7835- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |