mRNA_S-dermatodea_contig1284.1731.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: D7G727_ECTSI (Coatomer subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G727_ECTSI) HSP 1 Score: 296 bits (758), Expect = 3.040e-95 Identity = 165/186 (88.71%), Postives = 170/186 (91.40%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKEA 558
VVLSA+ITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTG NKQHTFIET+TVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGG+TEDKV SK+FELVFAFDEVITTGGHKE+ITLQQIKTNMEMDSHEERLH MIQDSKREAAKEEA RRAKELREK KEA
Sbjct: 16 VVLSASITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTG------------NKQHTFIETETVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGVTEDKVMSKSFELVFAFDEVITTGGHKENITLQQIKTNMEMDSHEERLHTMIQDSKREAAKEEADRRAKELREKAKEA 189
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A835ZBZ4_9STRA (Coatomer subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBZ4_9STRA) HSP 1 Score: 263 bits (672), Expect = 1.470e-82 Identity = 139/184 (75.54%), Postives = 161/184 (87.50%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQK 552
VVLSAAITT+NGKALLARQ+VDMSRIRIEGLLAAFPKLMGTG NKQHTFIETD+VRY+YQP+E LFLLL+TNK SNIVEDLETLRMLSKVVPDVAGG+ EDKV ++ FELVFAFDEV+T GG +E+I L Q+K N+EMDSHEERLHNMIQ+SKREAA++EA R+A+E+R++QK
Sbjct: 11 VVLSAAITTKNGKALLARQYVDMSRIRIEGLLAAFPKLMGTG------------NKQHTFIETDSVRYIYQPMETLFLLLITNKGSNIVEDLETLRMLSKVVPDVAGGVAEDKVAARCFELVFAFDEVLTAGGMRETIALPQVKVNLEMDSHEERLHNMIQESKREAARDEAARKAQEMRQRQK 182
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A4D9DAV0_9STRA (Coatomer subunit delta n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAV0_9STRA) HSP 1 Score: 250 bits (639), Expect = 1.490e-77 Identity = 132/182 (72.53%), Postives = 159/182 (87.36%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREK 546
VVLS AI T+NGKALL+RQFV+MSRIRIEGLLAAFPKL+G+G+ KQHTFIETDTVRYVYQPI+NLFLLL+TNKASNIVEDLETLR+LSK+VPDVAGG+TE++V K FELVFAFDEV+TTGG++ES+TLQQIKTNMEMDSHEE+L MI+ SK ++AK++A R+AK ++E+
Sbjct: 2 VVLSGAICTKNGKALLSRQFVEMSRIRIEGLLAAFPKLLGSGEE-----------KQHTFIETDTVRYVYQPIDNLFLLLITNKASNIVEDLETLRLLSKIVPDVAGGVTEERVSDKCFELVFAFDEVLTTGGYRESVTLQQIKTNMEMDSHEEKLALMIKQSKMDSAKDQAARQAKAIKER 172
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A7S2RJQ4_9STRA (Coatomer subunit delta n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJQ4_9STRA) HSP 1 Score: 244 bits (624), Expect = 3.310e-75 Identity = 129/181 (71.27%), Postives = 155/181 (85.64%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELRE 543
VVLSA++ T+NGKAL+ARQFV MSRIRIEGLLAAFPKL+G+ +A+N QHTFIETD+VRYVYQPIENLFLL++TNKASNIVEDLETLR+LSK+VP+ GGLTEDK+ K F+L+FAFDEVITTGGH+ESITLQQI+ N+ M+SHEE+LH MI+ SK +AKEEA R+AK L+E
Sbjct: 20 VVLSASVCTKNGKALVARQFVGMSRIRIEGLLAAFPKLVGS----------EAKNTQHTFIETDSVRYVYQPIENLFLLIITNKASNIVEDLETLRLLSKLVPETCGGLTEDKITDKMFDLIFAFDEVITTGGHRESITLQQIQVNVSMESHEEKLHKMIEQSKVSSAKEEADRKAKALQE 190
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A6V1W7X3_HETAK (Coatomer subunit delta (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1W7X3_HETAK) HSP 1 Score: 231 bits (590), Expect = 1.010e-74 Identity = 123/185 (66.49%), Postives = 154/185 (83.24%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKE 555
VVLSAA+ T+NG+ L+ARQFV+M+RIRIEGL+AAFPKL+G G +KQHTFIET++VRYVYQP+E L+L+LVTNKASNIV+DL+TLR+LSKVVPDV GG TE++V K F+LVFAFDE I +GG++E+ITL QI+TNMEMDSHEE+LH MIQ +K E AKEE+ R+AK +RE+ KE
Sbjct: 2 VVLSAAVVTKNGRVLVARQFVEMTRIRIEGLMAAFPKLLGGG------------SKQHTFIETESVRYVYQPLEQLYLVLVTNKASNIVQDLDTLRLLSKVVPDVCGGSTEERVQDKCFDLVFAFDEAINSGGYREAITLGQIRTNMEMDSHEEKLHQMIQKTKMENAKEESARQAKIMRERAKE 174
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: F0YG49_AURAN (Coatomer subunit delta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG49_AURAN) HSP 1 Score: 236 bits (601), Expect = 3.220e-72 Identity = 119/186 (63.98%), Postives = 160/186 (86.02%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKEA 558
VVLSA++ T+NG+ L ARQFV+M+R+R+EGLLAAFPKLMGTG NKQHTFIETD+VRYV+QP+E+++LLL+TNKASNIVEDLETLR+LSKVVP++AGG +E+K+ KAF+LVFAFDEVITTGG++E+I L+QI+TN+EMDSHEE+LHNM++ +K ++AK++A +K ++ +Q+EA
Sbjct: 2 VVLSASVCTKNGRCLFARQFVEMNRLRVEGLLAAFPKLMGTG------------NKQHTFIETDSVRYVWQPVESIYLLLITNKASNIVEDLETLRLLSKVVPEIAGGHSEEKLSDKAFDLVFAFDEVITTGGYREAIDLRQIRTNLEMDSHEEKLHNMVKKTKMDSAKDQAAHMSKVIKSRQREA 175
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A7S2MQW5_9STRA (Coatomer subunit delta n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MQW5_9STRA) HSP 1 Score: 236 bits (601), Expect = 4.480e-72 Identity = 123/183 (67.21%), Postives = 155/183 (84.70%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQ 549
VVLSAA+ T+NG+ALLARQ+VDM+RIRIEGLLAAFPKLMGTG ++QHTF+ETD+VRYVYQPIE L+LL++TNKASNIVEDLETLR+LSK+VP++A G+TE+K+ K FELVFAFDEV+T GGH+ESIT+ QI+ N+ M+SHEE+LH MI++SK + KEEA RRAK ++E+Q
Sbjct: 2 VVLSAAVCTKNGRALLARQYVDMTRIRIEGLLAAFPKLMGTG------------SQQHTFLETDSVRYVYQPIETLYLLVITNKASNIVEDLETLRLLSKLVPEIAEGVTEEKILDKMFELVFAFDEVLTPGGHRESITMPQIQVNLSMESHEEKLHKMIEESKVSSTKEEADRRAKTIKEQQ 172
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A7S3ZRB7_9STRA (Coatomer subunit delta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRB7_9STRA) HSP 1 Score: 235 bits (599), Expect = 8.110e-72 Identity = 119/187 (63.64%), Postives = 160/187 (85.56%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKEAV 561
V+LSAA+TT+NG+ALL+RQFVDM+R+R+EGLLAAFPKL GTG NKQHTF+ETD+VRYVYQP+E++FLLL+TNKASNIVEDLETLR+LSKVVP++AGG +EDKV AFELVFAFDEVITTGG++E+I ++ I+ N++MDSHEE+L NM++ SK +AAK++A ++ ++++Q++A+
Sbjct: 2 VILSAAVTTKNGRALLSRQFVDMNRLRVEGLLAAFPKLQGTG------------NKQHTFVETDSVRYVYQPVESIFLLLITNKASNIVEDLETLRLLSKVVPEIAGGTSEDKVSDHAFELVFAFDEVITTGGYRETIDMRTIRQNLDMDSHEEKLANMVKKSKLDAAKDQAKHMSQVIKQRQRDAM 176
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A7S3H6H8_9STRA (Coatomer subunit delta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H6H8_9STRA) HSP 1 Score: 224 bits (570), Expect = 2.290e-67 Identity = 122/190 (64.21%), Postives = 155/190 (81.58%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIENLFLLLVTNKASNIVEDLETLRMLSKVVPDVAG---GLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKEAV 561
VVLSAA+ T+ GKAL+ARQFVD+SRIRIEG+LAAFPKLMGT +QHTF+ET+ VRYVYQ ++NL+LLL+TN+ASNIVEDLETLR+LSKV+P+VAG LTE+ V K+FEL+FA DEVITTGG++E I LQQI+TNMEM+SHEE+LHNMI+ SK E+AK++A A+ +++KQKE +
Sbjct: 8 VVLSAAVCTKGGKALVARQFVDVSRIRIEGMLAAFPKLMGTDAK-----------QQHTFVETEAVRYVYQLLDNLYLLLITNRASNIVEDLETLRLLSKVIPNVAGVMTNLTEEHVADKSFELMFALDEVITTGGYREPINLQQIRTNMEMESHEEKLHNMIKISKMESAKDQASVAARAIKDKQKEQM 186
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Match: A0A6S8RNU9_9STRA (Coatomer subunit delta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8RNU9_9STRA) HSP 1 Score: 223 bits (567), Expect = 1.240e-66 Identity = 120/190 (63.16%), Postives = 153/190 (80.53%), Query Frame = 1
Query: 1 VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRIQARNKQHTFIETDTVRYVYQPIEN-LFLLLVTNKASNIVEDLETLRMLSKVVPDVAGGLTEDKVGSKAFELVFAFDEVITTGGHKESITLQQIKTNMEMDSHEERLHNMIQDSKREAAKEEAGRRAKELREKQKEAVSN 567
VVLSA+I TR GKAL++RQFV+M+R+R+EGLLAAFPKLMG +KQHTF+ETDTVRYVYQP+EN L+LLLVT KASNIVEDL TLR+L+KVVPDVAGG+ E+ + AFEL+FAFDEV+T+GG+KE TL I+TN++M+SHEE +HNMI++SK +AA EE R+AK ++EK+ A+ N
Sbjct: 29 VVLSASICTRGGKALVSRQFVEMNRMRVEGLLAAFPKLMG-------------HSKQHTFVETDTVRYVYQPLENQLYLLLVTTKASNIVEDLGTLRLLAKVVPDVAGGVQENSINEHAFELIFAFDEVLTSGGYKEEATLSSIRTNLQMESHEENMHNMIKESKEKAAAEEGKRQAKAMQEKKMAALRN 205 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1284.1731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1284.1731.1 >prot_S-dermatodea_contig1284.1731.1 ID=prot_S-dermatodea_contig1284.1731.1|Name=mRNA_S-dermatodea_contig1284.1731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=193bp VVLSAAITTRNGKALLARQFVDMSRIRIEGLLAAFPKLMGTGKNLATRKRback to top mRNA from alignment at S-dermatodea_contig1284:122..1806- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1284.1731.1 ID=mRNA_S-dermatodea_contig1284.1731.1|Name=mRNA_S-dermatodea_contig1284.1731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1685bp|location=Sequence derived from alignment at S-dermatodea_contig1284:122..1806- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1284:122..1806- >mRNA_S-dermatodea_contig1284.1731.1 ID=mRNA_S-dermatodea_contig1284.1731.1|Name=mRNA_S-dermatodea_contig1284.1731.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at S-dermatodea_contig1284:122..1806- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |