mRNA_S-dermatodea_contig12837.1730.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12837.1730.1
Unique NamemRNA_S-dermatodea_contig12837.1730.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12837.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12837contigS-dermatodea_contig12837:1472..3892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size909
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12837.1730.1prot_S-dermatodea_contig12837.1730.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12837 1569..2825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.1178176-UTR-S-dermatodea_contig12837:1471..15681622924264.1178176-UTR-S-dermatodea_contig12837:1471..1568Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 1472..1568 -
1694079135.2655773-UTR-S-dermatodea_contig12837:1471..15681694079135.2655773-UTR-S-dermatodea_contig12837:1471..1568Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 1472..1568 -
1622924264.1443412-UTR-S-dermatodea_contig12837:2825..29011622924264.1443412-UTR-S-dermatodea_contig12837:2825..2901Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 2826..2901 -
1694079135.2906177-UTR-S-dermatodea_contig12837:2825..29011694079135.2906177-UTR-S-dermatodea_contig12837:2825..2901Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 2826..2901 -
1622924264.1533914-UTR-S-dermatodea_contig12837:3145..32391622924264.1533914-UTR-S-dermatodea_contig12837:3145..3239Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 3146..3239 -
1694079135.2994149-UTR-S-dermatodea_contig12837:3145..32391694079135.2994149-UTR-S-dermatodea_contig12837:3145..3239Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 3146..3239 -
1622924264.1694205-UTR-S-dermatodea_contig12837:3727..38921622924264.1694205-UTR-S-dermatodea_contig12837:3727..3892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 3728..3892 -
1694079135.312621-UTR-S-dermatodea_contig12837:3727..38921694079135.312621-UTR-S-dermatodea_contig12837:3727..3892Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12837 3728..3892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.12644-CDS-S-dermatodea_contig12837:1568..15881622924264.12644-CDS-S-dermatodea_contig12837:1568..1588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12837 1569..1588 -
1694079135.2742763-CDS-S-dermatodea_contig12837:1568..15881694079135.2742763-CDS-S-dermatodea_contig12837:1568..1588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12837 1569..1588 -
1622924264.134821-CDS-S-dermatodea_contig12837:2368..28251622924264.134821-CDS-S-dermatodea_contig12837:2368..2825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12837 2369..2825 -
1694079135.2820833-CDS-S-dermatodea_contig12837:2368..28251694079135.2820833-CDS-S-dermatodea_contig12837:2368..2825Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12837 2369..2825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12837.1730.1

>prot_S-dermatodea_contig12837.1730.1 ID=prot_S-dermatodea_contig12837.1730.1|Name=mRNA_S-dermatodea_contig12837.1730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=159bp
MSSMLAVAWLPSAWHGASTTVSIAMLSSRFFRCAAILQLFASATAAIAPL
GGVGVVVRTAAFSSDSFSRTPQLPPTGSVVIERFTANECEVIFTRVNATE
GGMATDDAKSWSTRMHHTASLEEGMAMLRLVCGRCVSSRRGMMYNRLRTR
GGGRAEAG*
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mRNA from alignment at S-dermatodea_contig12837:1472..3892-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12837.1730.1 ID=mRNA_S-dermatodea_contig12837.1730.1|Name=mRNA_S-dermatodea_contig12837.1730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2421bp|location=Sequence derived from alignment at S-dermatodea_contig12837:1472..3892- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAAACCGCCGCCGCCGAGCAGCACGCTGCTGCCACTACTCACGAGGT
CGATCAGCGGGTAACGGGCATCCTCAAGCTGCGCGCTGAGGCGGACAAAG
CGCGCGCCGAGGGGACACAGAAGCAGATGCTTCTGGAGGTAACGGGGCTT
TGATTCGAGCAAGAGGTGTGTGTGTTCCCTTCTGCGCATGTTATTTCCGT
CGCTTGTGGAGTGCATGAAGTGGGGCGTTTTATGTAGTACTTGGAATTAG
TAGAGTGGGGTCATCTTGGCTATATACGTAACAAACAACACGTGTTTACT
GTCGGCGCGGCTTCGACTGACTAGCTGGTGTGTGGTGCAGAAGTTCGTAG
ATCTAGGACCCCCCACCGCCGCCGCACCAGGCAAGCCTTCCTCTCTCAAG
GAAAAGCGAGTTGGTAAGTTGACCTTCGGCCAAGGGAAGGCGGGCAACAG
GCGTCTTGCAACTGGGGCTGCTTGCGTAATAACGTAAGGCTTGATAAATT
AGGCTTAGTTCAAAAAGAAAACAACTGCTGCTGCACTCCTGGCAAACTCA
CCCTAACCATGATGTAATGCTCTGAATTTGACCGTTGTATAGCTTCGCGG
TCCTCATAAATCACCCATGCCCGCCCTGCCCTGTTGGTTATCGTACGAGA
TAGCTGAGGGAGCGCGAGGAAGAGCTCGCAAACACCACGGACCGCGCTGC
TGAAGAAGCCGTGAATCGGATGGCGCTCGAGGACGCCACGGACTGGTGTA
AGCTCCAGATGCGGCATTGGAGTTTGTGCGCGATATGCCGTACTGTAAAG
CATATGTATGGCTGAGTGTGTGGTGTTGTTCGCATTTTTTGGTCGTTTCC
GACCGACCGGTCTAGCCTGAATACCGCCTGTGATGACAGGACCTGGAGGT
CTGCGGGGCTGTAAGGCTTACTCCAAAACCACGCACACCCTTAACCCTTT
TCCCTCGAAATATTATATTCCTGCGGCCTTAACGGCGGCAGGTGGCGGCG
GTGCGATGGTGCCCACGATGATGCTATTACTTGTACGGGCATGGTTCACA
GAGGGCACTGATTAGAGATGTCATCGATGCTTGCTGTGGCTTGGCTTCCC
TCGGCGTGGCACGGCGCCTCCACAACCGTGAGCATCGCCATGTTGTCCTC
GAGGTTCTTCCGTTGCGCCGCCATCCTCCAACTCTTCGCGTCGGCGACGG
CTGCCATTGCTCCTCTCGGTGGCGTCGGCGTGGTAGTGCGGACAGCTGCG
TTCTCGTCAGACTCGTTTAGCCGCACACCGCAGTTGCCACCCACCGGGAG
TGTTGTAATTGAACGGTTTACGGCAAATGAATGCGAAGTTATCTTTACTC
GCGTTAACGCCACCGAGGGGGGCATGGCCACCGACGACGCGAAGAGTTGG
AGCACGAGGATGCACCACACGGCGAGCCTTGAGGAGGGGATGGCGATGCT
CAGACTTGTGTGTGGGCGCTGTGTCTCGTCGAGGAGGGGAATGATGTACA
ATCGCCTTCGCACGAGAGGAGGAGGTGCGCGTTTTGTGTATTTGGGTTGG
CTTAACTGCTGGCGGTAGTAGTAGCGCCAGTGATCCGCACGGTCTTTTGG
TGACATGCGCCGGTGTGACGAGGCAAGAGGATCGAATCACGTGACACTGT
GTGTGTGGTGACGGATGTCAATGCGCCGAAATCGATGTCTGGGTAATTCG
TGTATACTTCACTTGGTCGTTGCTGATTTTCCTGCTCTCGAGGGATATTC
CGTGTGACACGTGTGCGGGCAGCAGGGCTCTTATTGTTGGGCAATCAAGC
TTTAATCGTTGGTGTTTCTTCGTTTTCGCCGCTGTGCAACTTTTCACCGG
GCAGGCTACATGTATCCTGTCGGCTCATCTTGAGCGTGTTGCGGTACTGC
GATCGCCGGGTATACAAAATATAGTATGTAACATATCTGTACGAGAGTAC
GGCATATTTTCCGCACATTGATGATCACTCCGCTGTTGATAGCCCCCCCC
CCCCCCCACCCCCCACCACTCCTCCAACCCTCGTCTTCTCACCCCCTCCC
CCTCCTCTTTCCCCTCTCTTCNNNNNNNNNNCTGCTAAAAAAATCATGAT
ATTAATATTTTCTTATGGAGGGTATGGCCTGTTTGTCCCCTTTTATTGTT
TTCTCCCGCTGTTTATCCCCCCCCCCCCCCCCCCCCCATTTATTTTTAGT
CTTCGCTGGTGCCCGCCCGGTACGCCTTCATTTCGCAATCCAAAGGTTCA
GCCCCTCCTCCCCCTATTCATTGCGCATACCTCGCTGTTTGCGTCGCTTC
AAAGGTCGCGCAGAAGCAGGATGAAGTCTCGAAGTACAAGGACATATCTA
GGGCACGATGGCACGAGGTGGAGGACTACAAGCGGCGCGAAAGCAAGGAG
CTCGCGAACTGGGTAGCGACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12837:1472..3892-

>mRNA_S-dermatodea_contig12837.1730.1 ID=mRNA_S-dermatodea_contig12837.1730.1|Name=mRNA_S-dermatodea_contig12837.1730.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=954bp|location=Sequence derived from alignment at S-dermatodea_contig12837:1472..3892- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCATCGATGCTTGCTGTGGCTTGGCTTCCCTCGGCGTGGCACGGCGC
CTCCACAACCGTGAGCATCGCCATGTTGTCCTCGAGGTTCTTCCGTTGCG
CCGCCATCCTCCAACTCTTCGCGTCGGCGACGGCTGCCATTGCTCCTCTC
GGTGGCGTCGGCGTGGTAGTGCGGACAGCTGCGTTCTCGTCAGACTCGTT
TAGCCGCACACCGCAGTTGCCACCCACCGGGAGTGTTGTAATTGAACGGT
TTACGGCAAATGAATGCGAAGTTATCTTTACTCGCGTTAACGCCACCGAG
GGGGGCATGGCCACCGACGACGCGAAGAGTTGGAGCACGAGGATGCACCA
CACGGCGAGCCTTGAGGAGGGGATGGCGATGCTCAGACTTGTGTGTGGGC
GCTGTGTCTCGTCGAGGAGGGGAATGATGTACAATCGCCTTCGCACGAGA
GGAGGAGATGTCATCGATGCTTGCTGTGGCTTGGCTTCCCTCGGCGTGGC
ACGGCGCCTCCACAACCGTGAGCATCGCCATGTTGTCCTCGAGGTTCTTC
CGTTGCGCCGCCATCCTCCAACTCTTCGCGTCGGCGACGGCTGCCATTGC
TCCTCTCGGTGGCGTCGGCGTGGTAGTGCGGACAGCTGCGTTCTCGTCAG
ACTCGTTTAGCCGCACACCGCAGTTGCCACCCACCGGGAGTGTTGTAATT
GAACGGTTTACGGCAAATGAATGCGAAGTTATCTTTACTCGCGTTAACGC
CACCGAGGGGGGCATGGCCACCGACGACGCGAAGAGTTGGAGCACGAGGA
TGCACCACACGGCGAGCCTTGAGGAGGGGATGGCGATGCTCAGACTTGTG
TGTGGGCGCTGTGTCTCGTCGAGGAGGGGAATGATGTACAATCGCCTTCG
CACGAGAGGAGGAGGTCGCGCAGAAGCAGGATGAGTCGCGCAGAAGCAGG
ATGA
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