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Homology
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.360e-50 Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 3
Query: 234 VNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPTVNLSKLPLGN 548
+N RDT GPYFPFHRDETYPRTLCVNFKRLEYRTLQ+YCKLHGINVRPDC+Q ELAVAAARHFQEAP+VDEE VMVSFL++V+ P+RP+ PT++L+ +G+
Sbjct: 1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGS 105
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI) HSP 1 Score: 176 bits (446), Expect = 1.040e-47 Identity = 80/105 (76.19%), Postives = 95/105 (90.48%), Query Frame = 3
Query: 234 VNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPTVNLSKLPLGN 548
+N R+T P GPYFPFHRDETYPRTLCVNFKRLEYRTLQ+YCKLHGINVRPDC+Q ELAVAAARHFQEAP+VDEEGVMVSFL++V+ P+RP+ PT++L+ +G+
Sbjct: 1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGS 105
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 1.500e-16 Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 3
Query: 255 APRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRR 485
+P PYFPFHRDE YP+ V+F++L+ TL+ Y H INVRPD T+ ELA+AAA HF+ V+E + SFL +
Sbjct: 17 SPNLPYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNK 93
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 179.1 |
| Seed ortholog evalue | 1.8e-42 |
| Seed eggNOG ortholog | 2880.D7FGV9 |
| KEGG ko | ko:K03246,ko:K11364 |
| KEGG Pathway | ko03013,map03013 |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0009628,GO:0009651,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016573,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043543,GO:0043966,GO:0043967,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051276,GO:0071704,GO:0071840,GO:1901564 |
| EggNOG free text desc. | methylated histone binding |
| EggNOG OGs | KOG3038@1,KOG3038@2759 |
| Ec32 ortholog description | SGF29 tudor-like domain protein |
| Ec32 ortholog | Ec-11_000840.1 |
| COG Functional cat. | ADK |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03012,ko03021,ko03036 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 740 |
| Cds size | 522 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig924.17299.1 >prot_S-dermatodea_contig924.17299.1 ID=prot_S-dermatodea_contig924.17299.1|Name=mRNA_S-dermatodea_contig924.17299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
MMNGGVNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLH GINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPT VNLSKLPLGNSNSRNNNNNSNSNVTSNSNSDILASDRGGGGGARPAVVDN NIDDDYDDEVDGVDGDRDGRGGAR back to topmRNA from alignment at S-dermatodea_contig924:3100..8923- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig924.17299.1 ID=mRNA_S-dermatodea_contig924.17299.1|Name=mRNA_S-dermatodea_contig924.17299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5824bp|location=Sequence derived from alignment at S-dermatodea_contig924:3100..8923- (Saccorhiza dermatodea SderLu1190fm monoicous) CTGATCTTTTAGCATAGCGGAGCCTGGGCAGCGAAGGCGACACAGGCGAG
CGATCGGGACTGAACCTCGCCAGCCTTTGAAAGCGGGAGGATCGGATAGG
AGGGCGAGTCGCGCGTCTCGGGGTGCTCGTGTCTAGGAGTGTTGTTCTCT
GGTCACGCGGAGGCCAGGCACAGGCTCCTGTATCTCTGTTTTTTGCTGGT
CAGAGAGAGAAGAGAAGCATGATGAACGGCGGGGTAAACCTCAAGCGGGA
CACCGCTCCCCGCGGGCCGTACTTCCCATTCCATCGAGACGAGACGTACC
CAAGGACACTCTGCGTGAACTTCAAGCGGCTCGAGGTGAGGGCGGGCCCT
CGCGCAAGCAGGAGGGTCAGGAGGGGAGTAGTATCCCAGGTGATGCGCCA
TATGCATACATCATGGAGGACGGGGACCCACCCCCCCCCTCTGCTGGAAG
TCGTGGTAAATACATTTGTATACACACTGCGATAAGTATCATTTGTGTTT
TAGAGGAGAGTCAAGGATTCAGGATTGTGTTGACACCACAGCAGAGCGAA
CTCGGACTCTACCACACTATACAGCAGCGACGCCACGTGCGATGGTTCGC
GCCAGCCACCCGCCCACGCAGCGATCAAACCTGGAAACCTCTGCACCGAA
TTCGCCGCCCGAACCGCCACCCGACTCGACTGGAGCTCTGTTTTAGGCCG
TGAGAGTGTAGTCAGCCGTTGGGCAGCAGTCAAGTCAGCAGGGTCGCCCC
ATGCATGCTTGTCAGGCTGCACCCCTACTGCTGGGCCCTGTGCTCGACGA
GCAGCGATGGCAACGTGTCTCGGATGCGGAGCCCCTTCCTTCTACAGGCT
CCTGCTGGGGGCGGTAGTAGGCGGGTTAGTAGCGTCTGCTGTTGGTGTTG
CTTCGCTGTGATTTCTCTACGCGTGTGCGTTTTGGTTTATTTTAGTTTTG
ACCATCGGCGATCGATCGCCAACTCAGCTCGACTCCGACTCCGACTTTCT
GCTTTATTTTGGGGGGCGATTTTGTCTTGTTTATAGTATAGCAAGAAGTC
GTGACACTACTTTTTGTCTTGTACTAATACTCCTTTATTATTAATAAATA
TTATAGTATTCATGGACTTGTACAGCAGTATGCTCTAGTGCTAGAGCTAC
AGCAGCGTAGGTGGGTCGGTAATTATAGCACCATAGAAGAAGCTCGCGTG
CTTTGGTGGCGTTCTACTAGTACTACAAACTACTATTAATTCTGCTGTAG
CGCTATTAGTAGTAGAGAGACTATGTACGCGAAGAGGCACAGAACAGAGC
AGCTACCTGCGCTGAGGCGTCGTCATGCGTTTGTTGTGTTGGTTTGCTGT
TTTCTATGATATTTGTTGCTTCTTGCCCAAAAACCAGAGAAAAAAAAACG
AACAATCAAAACCAGCAACAAAATGAAAAATCACACACACACCACGCACG
TTTCATCTGTCTGTCGTTTGTCTTTGATGGATGGCCATCTCCCAACATAA
TATTTTCGTGGCGGAGGGATTTTGTTTCTGCCCGTCGCCTTGAGCGCCAG
CCACGCGCGGAACGAACGCTGCTGTCACAGACCCGTGCGTACAGGCGTTA
TGTATGACTGTTGTATAGCATGTACGTATCACAACATATGGGACAGGTAC
AAACAGTTATAAATAGTATTAATAGCAGACGTGGTTGCGGAGCCGTACAT
CTGGTTTTTTAAGATACTACTCTCGTCGTACAGCAAATAACTCTGTGTCA
CATGGCTTGGCCTTGGTCATTTTGGGCATTTGTCGTGTGTCATGGCCCCC
CACTCATCCCTCCCTGTCTCGTATAACATAAGATCACACGTACTTGTAAA
GTACCTGGTATACGATACATGACATGAAAGAGATACTCTGACATTGTATT
ATAGTTGTATATATCATACCCAGTTTTTGTTTATGTGCGTACATTATACC
CCACACGAGACGATCGATCTATGATAGACCCGCCAGCATCTCTTGTACTG
CAACTACTGTACAACTGTAGAGCATCGTACCGGTGGTATCATAATAATAA
TACTGTCATATTTATAATACTATTAATTATACTCCCCATGTTAGGACAAC
ATGTCCTCTCCCTCCTTTAACAATCCGGTATCAGATCATACCGACGCTGC
AAGTACTCACTCTGGTATCATACTCACAAGTACAGCAGGACACACAAGTC
TTATTAATAAGTAATATTATATATTATGTATTCGTATATATATTTAGCTT
GTAGTTGTACTCCGCGCCCCGTGGTTGATTGAACTGGTTGACCAACAGCT
CCGTAGGAGGAAGACCCGGGTTCAAATCCCGGCAGAGTCGATATTTACTT
ATTTTCTCTACATGTACCTCCGCCACGGAAAGCTTTCGCGAGAGCGTGAG
TAAGCAGCAAATCCGAGAAAACGGTAAGCTGTGGGAGTGCCGAACCCAAT
GCATTCGCGATAAAGATCAAAGGCGAGAACCGGGGATAAGAGAGGGGTTG
ATCCCTTGTGACCACAGACGGACCTACCTCGGAAAAGCAAGTCAATAATG
TGTGTGATACCCACATGCAAAGTGTCTCGCCGTCGTGCCTGGACCGACAT
TTGACACGTGTACAAGACATGATACATGATACATGATACACATGTACACG
ATACACGATACACATGACAGACAGCCGTTTCAGGCGCTTTGGTTGGGTAC
AAGTACTCTCTGTTCTGCTGTATGATATAATACCAACCAAGTATGCATGT
CATACAGATAAAGCATTTAGCACAGAGCTCCATGTCGAGATCGTGACCCA
AATTCCTTGTTGTGCACGATGTGTGTACTGTACTGCTGTACGATATGATT
TCACGTGGGAGATGAATGATCGAAACACTAATATTTACTCTACTACTGTG
ATACTATTTTATTCATTTCGTATTTCAGTACAACTATTGACAGTATTAAT
ATTATGTAGTTTAGCCGTGAGGTGTAAAGAAAACAAGTTGTTTGGCGCTC
AAAACAAACATTAAGTTGTTGTTTGGCATCGCTTTTTGATGAGGAGTTTG
TTGGACAAATATCGTATACTCGTACTTGTAGGACTTGTGTTTTTTACTGG
CCAAAGCTGACAGTCTAGTCTTTGGTCGGAATGTGGTCGCAATGGCCGTT
GACGAAGTTTGGTTCAAACGTTACAGGCCTCGGATAAAGATTAAGGATCT
GAGGGCGGTATGGGTTCGGGTTAGGGTTAGCGTTAGGGTTAAGAGTAAAG
GTTGCAGGGTAAAGGTTAGGGTTAAAGAGTAAATGTTACAGGGTAAAGGT
TGAAGGGTTAGGGTTAGGGTTAGGGTGGGTTTGTCGACGGCCCCGTGCCA
GCGCGCCAGCGCTTTCAAAACACAATTTGTAAAACAAATGCTTTGTTTCA
TAATTTTCTCGGAAATTTCTAAAAGTGGGGACCACTTGGTAAAGTCCCCT
CGTGTAAGTATTGTACCCTGAATCAACCACAGAGTCCGGCCTTATCTTAC
AACATCTGCAAAATAAAAAAACTAAAAACGGCCTGAAGCGAAACGTGTCA
AAGAAAAAAATAAATACTCGTAATTTTTTTTAATTAACGTTTGGAAACAA
TTTCATACTTGGACCACGCTTTTCACGAGAAACTACAATATTTAATATCG
TACTGTACAGTAGTATATTTAATATCTATAATAGTAGGAAGCCACGGCTA
CGCCCGTGAGGTGAAAAACCATACTCTTCAACACTTGGCGATCAACACAA
GCATCAAGTTTTTTGCTTCACTTTTTCCTATAGGATTCCGGCCTCACAAA
ATCGTTCTCTAAAATCGCTATTAATAGTACAAATCGGTCAACAGCTATTA
ATGGCATATATTGAAGAATCACAAGCAGTGAGTATGTGTACCTATACCCC
TCTCTCGGTACAGTATGAAGTACCCGCCCCGTTTTGAAGCAAAACATGTT
TTACAGAAAAGAGACGCACGTTCATCCCTCCCTGTTGATATCATACCCCG
CCCCACCCGCAGGCGGTAGCTATATACTTTCGAAGTATATACTGGGGGAT
AAGAAGTGTGGCCTGAGAAGGCGAGAAGTGATGTAGACAGGATAGGAAAA
ACCATTTTGCGCCACCTTTAGCAGAGTAGGAGGAAACAATTGGCCATCGG
AGATCGATCGATCCTGTGGGAATAATCCCCCGTCCCCCGTCCTCTCGAGG
ACAGACGCGTGGTCAATGGTCTAACAGCTAACGCATGCAAAACAATAGTA
CCCCCCCCCCCCCCCTAACGACTACGGCATGCACGACCAATGAGTACACC
CCCTAAAAAATTAAGATTTCAGAAACATAGAGCGAGCGTTGTACACCCCC
CCCCCCCGCACGCCAAAGTGCAAGGATGATGGCTAGCAGGTGGTATCCTC
CTTGTGAAACGCAGCCTGGCCGGCGAACCGAAAACCCGGCATATCGCTCC
TCCGCCCCGGCATTGTTGGGACGCGGGTTCTATGTCCGTCTGAACAAGAC
ATACCTTTAATACACCCCTCCCCCTCCCCCCACCCCTCCCACCCCCACCC
CCTTCTCGGCCTTGTTTTGTGTTTGCCTTGTGCGCGTTTTGGCGTGGCGG
CGGACCTGACCTACAGTACCGCACGCTCCAGCGCTACTGCAAGCTGCACG
GGATCAATGTCCGGCCCGACTGCACACAGCCCGAGCTAGCGGTCGCCGCG
GCTCGACACTTTCAGGTACACACATGCTGTAATGATAGTGTGTACCTTTT
TCAGGTACTGTACAAGTACTTGTATTATACGTTTTTCATGTACATCGTAC
ACATGATGTGCACGTCAGAGACTTGTTGGTGCGTTGTGTGTAGTGGGGAA
GGTGGCTCAGGCCAGGCTATGGTACATACCCTCATGAAGCGTGGGTTTGA
CGTATATCGGGTATGGTACGACCTTTGAGGTTTGATGCTGAAGAACAACT
GCCCTTGTGGAGCGTGCGTGTATGTATAAGAAAATTATTCCCGGGGACCA
TACAGTAGTCAACAGGTCCAAATTTGCCACAAGTCTCAACCTAGAAAAAA
AATCCAAATAGGCTGGAATTATCAAATTTGAACGTCGATGTTCTTGTATA
TGGCCATATCTCGTGTTTTTTCGTTTTCGCTAGATTTAGTTGTTGTTTGT
GTACTCATGATTGGAATAGTTGGGTATTCATGGTCATGAGATTGATGTGG
TCCTGATAATTGTGCACCTCCGTAATAGTAAATATCGTAACAGAATAACT
ATTAAGTGTCTTGAAACATGTACTTGTAGCAGCGTAAGAACACAGCTGGA
GATGGCATGGTATTATACTACAGTACAGTACTGATTGTTTTCATTTTACA
GATTCGTAAGTGTGACCCCACCCGACCCGCTCACCTCCACCCACCCCTCC
ACCTTCATCCCCCCTCCCTACCGACCACCCACCGACCCACCCGATCCCCT
CCACCTATCACCCCCCGCTCCACCCCCTATCGGAAACATACCACGGCGTC
GACCGCGATGATCCGCAGGAGGCGCCGGCGGTAGACGAGGAAGGGGTAAT
GGTTTCGTTCCTCAGGCGCGTCATGGACCCGGAGAGGCCCTACCGCCCGA
CCGTCAACCTCTCGAAGCTACCCCTCGGCAACAGCAACAGCAGGAACAAC
AACAACAACAGCAACAGCAACGTCACCAGCAACAGCAACAGCGACATCTT
AGCGTCGGACCGCGGGGGAGGAGGCGGTGCCCGGCCGGCGGTGGTAGACA
ACAACATCGACGACGACTACGACGACGAGGTCGACGGAGTTGATGGAGAT
AGGGACGGCCGAGGTGGCGCCCGG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig924:3100..8923- >mRNA_S-dermatodea_contig924.17299.1 ID=mRNA_S-dermatodea_contig924.17299.1|Name=mRNA_S-dermatodea_contig924.17299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig924:3100..8923- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGATGAACGGCGGGGTAAACCTCAAGCGGGACACCGCTCCCCGCGGGCC GTACTTCCCATTCCATCGAGACGAGACGTACCCAAGGACACTCTGCGTGA ACTTCAAGCGGCTCGAGATGATGAACGGCGGGGTAAACCTCAAGCGGGAC ACCGCTCCCCGCGGGCCGTACTTCCCATTCCATCGAGACGAGACGTACCC AAGGACACTCTGCGTGAACTTCAAGCGGCTCGAGTACCGCACGCTCCAGC GCTACTGCAAGCTGCACGGGATCAATGTCCGGCCCGACTGCACACAGCCC GAGCTAGCGGTCGCCGCGGCTCGACACTTTCAGTACCGCACGCTCCAGCG CTACTGCAAGCTGCACGGGATCAATGTCCGGCCCGACTGCACACAGCCCG AGCTAGCGGTCGCCGCGGCTCGACACTTTCAGGAGGCGCCGGCGGTAGAC GAGGAAGGGGTAATGGTTTCGTTCCTCAGGCGCGTCATGGACCCGGAGAG GCCCTACCGCCCGACCGTCAACCTCTCGAAGCTACCCCTCGGCAACAGCA ACAGCAGGAACAACAACAACAACAGCAACAGCAACGTCACCAGCAACAGC AACAGCGACATCTTAGCGTCGGACCGCGGGGGAGGAGGCGGTGCCCGGCC GGCGGTGGTAGACAACAACATCGACGACGACTACGACGACGAGGTCGACG GAGTTGATGGAGATAGGGACGGCCGAGGTGGCGCCCGGGAGGCGCCGGCG GTAGACGAGGAAGGGGTAATGGTTTCGTTCCTCAGGCGCGTCATGGACCC GGAGAGGCCCTACCGCCCGACCGTCAACCTCTCGAAGCTACCCCTCGGCA ACAGCAACAGCAGGAACAACAACAACAACAGCAACAGCAACGTCACCAGC AACAGCAACAGCGACATCTTAGCGTCGGACCGCGGGGGAGGAGGCGGTGC CCGGCCGGCGGTGGTAGACAACAACATCGACGACGACTACGACGACGAGG TCGACGGAGTTGATGGAGATAGGGACGGCCGAGGTGGCGCCCGG back to top
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