prot_S-dermatodea_contig924.17299.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig924.17299.1
Unique Nameprot_S-dermatodea_contig924.17299.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length174
Homology
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: A0A6H5L5U0_9PHAE (SAP30_Sin3_bdg domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U0_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 9.380e-52
Identity = 79/105 (75.24%), Postives = 93/105 (88.57%), Query Frame = 0
Query:    6 VNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPTVNLSKLPLGN 110
            +N  RDT   GPYFPFHRDETYPRTLCVNFKRLEYRTLQ+YCKLHGINVRPDC+Q ELAVAAARHFQEAP+VDEE VMVSFL++V+ P+RP+ PT++L+   +G+
Sbjct:    1 MNGLRDTVSPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEENVMVSFLQKVIVPDRPFEPTIDLALARMGS 105          
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: D7FGV9_ECTSI (SGF29 C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV9_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 4.220e-49
Identity = 80/105 (76.19%), Postives = 95/105 (90.48%), Query Frame = 0
Query:    6 VNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPTVNLSKLPLGN 110
            +N  R+T P GPYFPFHRDETYPRTLCVNFKRLEYRTLQ+YCKLHGINVRPDC+Q ELAVAAARHFQEAP+VDEEGVMVSFL++V+ P+RP+ PT++L+   +G+
Sbjct:    1 MNGLRETVPPGPYFPFHRDETYPRTLCVNFKRLEYRTLQKYCKLHGINVRPDCSQAELAVAAARHFQEAPSVDEEGVMVSFLQKVIVPDRPFEPTIDLALSRMGS 105          
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Match: A0A7S4DFH4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFH4_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 1.810e-17
Identity = 39/77 (50.65%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   13 APRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLHGINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRR 89
            +P  PYFPFHRDE YP+   V+F++L+  TL+ Y   H INVRPD T+ ELA+AAA HF+    V+E   + SFL +
Sbjct:   17 SPNLPYFPFHRDEVYPKGTKVDFRKLKASTLELYALKHKINVRPDATREELAIAAALHFKSRETVNEHTAISSFLNK 93          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig924.17299.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L5U0_9PHAE9.380e-5275.24SAP30_Sin3_bdg domain-containing protein (Fragment... [more]
D7FGV9_ECTSI4.220e-4976.19SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S4DFH4_HETAK1.810e-1750.65Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038291SAP30, C-terminal domain superfamilyGENE3D1.10.720.110coord: 22..102
e-value: 4.1E-9
score: 38.2
IPR025718Histone deacetylase complex subunit SAP30, Sin3 binding domainPFAMPF13867SAP30_Sin3_bdgcoord: 38..90
e-value: 1.3E-15
score: 57.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig924contigS-dermatodea_contig924:3100..8705 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig924.17299.1mRNA_S-dermatodea_contig924.17299.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig924 3100..8923 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig924.17299.1 ID=prot_S-dermatodea_contig924.17299.1|Name=mRNA_S-dermatodea_contig924.17299.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
MMNGGVNLKRDTAPRGPYFPFHRDETYPRTLCVNFKRLEYRTLQRYCKLH
GINVRPDCTQPELAVAAARHFQEAPAVDEEGVMVSFLRRVMDPERPYRPT
VNLSKLPLGNSNSRNNNNNSNSNVTSNSNSDILASDRGGGGGARPAVVDN
NIDDDYDDEVDGVDGDRDGRGGAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038291SAP30_C_sf
IPR025718SAP30_Sin3-bd