prot_S-dermatodea_contig9213.17282.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9213.17282.1
Unique Nameprot_S-dermatodea_contig9213.17282.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length689
Homology
BLAST of mRNA_S-dermatodea_contig9213.17282.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI)

HSP 1 Score: 666 bits (1719), Expect = 1.850e-225
Identity = 434/713 (60.87%), Postives = 504/713 (70.69%), Query Frame = 0
Query:    1 TNEGETGSRRLLSATSAVLERFKEKTFRSRSGGRDLNPRSVTLVTRLHPPSRRSTGA------KSAPPRSFRQDSPITCVRTDVNREL----SPSETSERGGGRASPPVDVRKDSNDLSAIFDDDGEFDDSQAPKASSIAS-SDDQEYATSPRSKWAATLMASTLAREKATGNTTVRGRVDLLPRLADAGNKVEYLIKVCKAAQAYASTQAPKLSKVRDGQHMINQLRDVTSDLGRQHDKILAVYEVREVRRSADRLGETLNGVYDLLGDVEGTAVMFGRKKGFGKRVSALVHDIGTHANSLLAATSLAIADRPNVLYMADTGEGDPPVPQQEELFKICIEGDKYFFGRGEKPNPKKAFEAYSWAAERGCAEAMYMMACMYMAG-GHMESDEEKCQLWLERAVDKGYAPALNNLAVILLGEADHLEEAHPEVKASASFSP--RDSASISADGG---------EPHKEGWKAGRSWESGDLEEAEGKXXXXXXXXXXXXXXXXXXXEGGTCLPPEQARLFEKIMEKRKRSMRLLQEAAKTGHTDAMTNLGNMQEAMGYFDDARNSYSLAAGPSESANNSRAQNYLGTLFYEGRGVTRDLVEAVKWFRRGARQGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYVLARDALHTLAAAARQAP---------MCISGAGLKFKDPSWRVMHAGEVSSEAS 681
            T +   GSR LLSATSA L R K  T RS + GR LNPRSVTLV+ L  PSR   G       +++     R+D P +    + ++       P +  + GG         + +   LS +FDD+    ++   + +SI S S +   A +PRSKWAATLMASTLAREKATG   VR RVDLLP   +A NK+EYL+ VCKAAQAYASTQA +LS+VRDGQHMINQLRDV SDLGRQ +K+LAVY+ REVR SADRLGETL GVYDLLGDVEGTA+MFGRK+GFGKRV+ALVHDIGT AN+LLAATSLAIADRPNVLYMADTG G+PP PQQ+EL K+CIEGDK+FFGRGE PN  KAFEAY+WAAERGCAEAMYMMA MY  G G +++D E+CQ WLERAVDKGYAPA+N+LA  LL +AD  E AHPE+KA  + +    DS +  AD G         + H  G                  XXXXXXXXXX         E  + LPPE A+LFE++MEKRKRSM+LLQ+AAKTGHT+AMTNLGNMQEAMGYF+DAR+ YSLAA PSESANN RAQNYLGTLFYEGRGVT+D  EAVKWFR  ARQG     XXXXXXXXXXXXXXXXXXXXXXXXXXXX          LAY+LARDALH LAAAARQAP           ++G GL+F+DPS  +M    +SS+AS
Sbjct:   70 TKQSPAGSR-LLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGLLSPSRGKKGVDNDGADRTSEEDRSRKDRPFSQGHVENDKSAPWVQDPGQDDDGGG--------TKSNKQKLSVLFDDEESNAENGTEEGASIPSTSTNDSNAATPRSKWAATLMASTLAREKATGKAMVRNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVASDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVIADSPTDDADRGLGATRPPTPDDHTSGGSEEXXXXXXXXXXXXXXXXXXXXXXXXDGGRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGFPQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGSISATNSLAYLLARDALHALAAAARQAPPGLDQRNLSAGVAGTGLQFEDPSRGIMKPAGLSSQAS 773          
BLAST of mRNA_S-dermatodea_contig9213.17282.1 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 335 bits (860), Expect = 3.620e-96
Identity = 220/490 (44.90%), Postives = 277/490 (56.53%), Query Frame = 0
Query:  142 RSKWAATLMASTLARE--------KATGNTTVRGRVDLLPRLADAGNKVEYLIKVCKAAQAYASTQAPKLSKVRDGQHMINQLRDVTSDLGRQHDKILAVYEVREVRRSADRLGETLNGVYDLLGDVEGTAVMFGRKKGFGKRVSALVHDIGTHANSLLAATSLAIADRPNVLYMADTGEGDPPVPQQEELFKICIEGDKYFFGRGEKPNPKKAFEAYSWAAERGCAEAMYMMACMYMAGGHMESDEEKCQLWLERAVDKGYAPALNNLAVILLGEADHLEEAHPEVKASASFSPRDSASISADGGEPHKEGWKAGRSWESGDLEEAEGKXXXXXXXXXXXXXXXXXXXEGGT------CLPPEQARLFEKIMEKRKRSMRLLQE-------------------------AAKTGHTDAMTNLGNMQEAMGYFDDARNSYSLAAGPSES-ANNSRAQNYLGTLFYEGRGVTRDLVEAVKWFRRGARQGNA 591
            RS+WA TL+ ST +                        +PR  D GNKV++L+ VCK+ + YA     KL  VR G  +I  LRD  +DL RQ DKILAVY+  EVRRSADRLG TL  V+++L DVE  A MFGRKKGFGKRV ALV ++GT+ANSLLAATSLAIADRP +LYM D  +G PP  + EEL + C+EGD++++GR   PN +KA  AY WAAERG  EA YM+A MY  G  + +D E+C  WLERAV++GYAPA+N LA++LL EA+ +  A PEV+A+       +A   A G     +                   XXXXXXXX            G T       L PE A  F    E RKR+  LLQ                          AA+ GH DAM +LG++ E  G    AR  Y LAA P +  ANN+RAQN+LG +++ GRG  RD  EA +WF+R A+QG A
Sbjct:  288 RSRWAQTLLLSTTSSAFKGXXXXXXXXXXXXXXXXXATMPREEDVGNKVDFLVAVCKSTEVYAKQLEAKLGTVRSGVALIEGLRDTHADLKRQRDKILAVYDTLEVRRSADRLGTTLTHVFEVLSDVERAARMFGRKKGFGKRVQALVQELGTNANSLLAATSLAIADRPQMLYMVDADDGAPPKHKLEELIQRCLEGDRWYYGREGPPNFEKAHAAYLWAAERGFGEAQYMLAWMYKHGHFVTADAERCTHWLERAVERGYAPAMNELALLLLEEAEGISAAWPEVQAAFDELASKAADADAAG-----DXXXXXXXXXXXXXXXXXXXXXXXXXXXARDVRGSAAAALGATQRRLQRTLSPEAAAKFAAAAELRKRAQSLLQRVRLCVRREVRCVRQLCAAAVPAAVSAARLGHADAMASLGSLLEEAGRVRAARRWYELAAAPGDGGANNARAQNFLGRMYHSGRGAARDPREAARWFKRAAKQGLA 772          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9213.17282.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G201_ECTSI1.850e-22560.87Sel1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CC33_9STRA3.620e-9644.90MYND-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 457..481
NoneNo IPR availablePANTHERPTHR11102:SF147SEL1L ERAD E3 LIGASE ADAPTOR SUBUNITcoord: 503..636
coord: 334..411
NoneNo IPR availablePANTHERPTHR11102SEL-1-LIKE PROTEINcoord: 503..636
coord: 334..411
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 334..409
NoneNo IPR availableSUPERFAMILY81901HCP-likecoord: 501..633
IPR006597Sel1-like repeatSMARTSM00671sel1coord: 360..395
e-value: 7.8E-5
score: 32.1
coord: 591..626
e-value: 1.3E-8
score: 44.6
coord: 555..590
e-value: 6.0E-9
score: 45.7
coord: 324..359
e-value: 27.0
score: 9.9
IPR006597Sel1-like repeatPFAMPF08238Sel1coord: 555..590
e-value: 4.5E-8
score: 33.5
coord: 334..357
e-value: 6.0
score: 7.7
coord: 591..626
e-value: 6.3E-5
score: 23.5
coord: 360..395
e-value: 3.7E-5
score: 24.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 491..662
e-value: 1.8E-34
score: 121.1
coord: 324..432
e-value: 1.2E-16
score: 62.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9213contigS-dermatodea_contig9213:4712..8474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9213.17282.1mRNA_S-dermatodea_contig9213.17282.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9213 4712..8474 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9213.17282.1 ID=prot_S-dermatodea_contig9213.17282.1|Name=mRNA_S-dermatodea_contig9213.17282.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=689bp
TNEGETGSRRLLSATSAVLERFKEKTFRSRSGGRDLNPRSVTLVTRLHPP
SRRSTGAKSAPPRSFRQDSPITCVRTDVNRELSPSETSERGGGRASPPVD
VRKDSNDLSAIFDDDGEFDDSQAPKASSIASSDDQEYATSPRSKWAATLM
ASTLAREKATGNTTVRGRVDLLPRLADAGNKVEYLIKVCKAAQAYASTQA
PKLSKVRDGQHMINQLRDVTSDLGRQHDKILAVYEVREVRRSADRLGETL
NGVYDLLGDVEGTAVMFGRKKGFGKRVSALVHDIGTHANSLLAATSLAIA
DRPNVLYMADTGEGDPPVPQQEELFKICIEGDKYFFGRGEKPNPKKAFEA
YSWAAERGCAEAMYMMACMYMAGGHMESDEEKCQLWLERAVDKGYAPALN
NLAVILLGEADHLEEAHPEVKASASFSPRDSASISADGGEPHKEGWKAGR
SWESGDLEEAEGKLQEEKGVNEEEVEDEEEEIEGGTCLPPEQARLFEKIM
EKRKRSMRLLQEAAKTGHTDAMTNLGNMQEAMGYFDDARNSYSLAAGPSE
SANNSRAQNYLGTLFYEGRGVTRDLVEAVKWFRRGARQGNAQACQNLGTC
YQAGLGVAKDMPKAVELFRQAVEGGSKSATNNLAYVLARDALHTLAAAAR
QAPMCISGAGLKFKDPSWRVMHAGEVSSEASIQVIIFR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006597Sel1-like
IPR011990TPR-like_helical_dom_sf