mRNA_S-dermatodea_contig12832.1728.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12832.1728.1
Unique NamemRNA_S-dermatodea_contig12832.1728.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12832.1728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12832contigS-dermatodea_contig12832:4904..5385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size482
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.0025258-CDS-S-dermatodea_contig12832:4903..52511622924264.0025258-CDS-S-dermatodea_contig12832:4903..5251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12832 4904..5251 +
1694079135.1898928-CDS-S-dermatodea_contig12832:4903..52511694079135.1898928-CDS-S-dermatodea_contig12832:4903..5251Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12832 4904..5251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924264.0119212-UTR-S-dermatodea_contig12832:5251..53851622924264.0119212-UTR-S-dermatodea_contig12832:5251..5385Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12832 5252..5385 +
1694079135.1987472-UTR-S-dermatodea_contig12832:5251..53851694079135.1987472-UTR-S-dermatodea_contig12832:5251..5385Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12832 5252..5385 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12832.1728.1prot_S-dermatodea_contig12832.1728.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12832 4904..5251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12832.1728.1

>prot_S-dermatodea_contig12832.1728.1 ID=prot_S-dermatodea_contig12832.1728.1|Name=mRNA_S-dermatodea_contig12832.1728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
GAPPQGSRNVQAVLPLYKHYSGGWALQCELGAPGVGAPVPKLRLLRTGQV
RHVVLRLLGKKMAEEQGGAALARRRGDHAQARHERCDGDPLQNHRGCVRQ
NTSSLRVGGGGAVLV*
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mRNA from alignment at S-dermatodea_contig12832:4904..5385+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12832.1728.1 ID=mRNA_S-dermatodea_contig12832.1728.1|Name=mRNA_S-dermatodea_contig12832.1728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=482bp|location=Sequence derived from alignment at S-dermatodea_contig12832:4904..5385+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCACCTCCACAGGGGTCCAGAAACGTCCAGGCCGTGCTTCCGCTGTA
CAAGCATTACAGCGGAGGCTGGGCACTGCAGTGCGAGCTGGGTGCGCCAG
GTGTTGGGGCACCGGTCCCTAAACTGCGCCTGCTTCGCACAGGCCAGGTC
CGCCATGTTGTTCTTCGTCTCCTCGGGAAAAAAATGGCCGAAGAACAAGG
AGGGGCGGCCCTGGCACGGAGGAGGGGCGATCATGCCCAAGCACGCCACG
AGAGGTGCGATGGTGACCCGCTTCAGAATCATCGTGGCTGTGTGCGCCAA
AACACAAGTTCGCTCCGGGTTGGTGGCGGTGGTGCTGTCTTGGTATAGAT
TCAGTCACCGTGTTTACGCCAAAACTACAACTGTTGTGTAGTAGGAAGTC
TTGGCTCGGTGGGTGTCCGCCGTGGGTCTCCGTGGCATGGAGACTCGTCG
GGCGGTACTTTGGAAAAAGACCTATACTTAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig12832:4904..5385+

>mRNA_S-dermatodea_contig12832.1728.1 ID=mRNA_S-dermatodea_contig12832.1728.1|Name=mRNA_S-dermatodea_contig12832.1728.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig12832:4904..5385+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCACCTCCACAGGGGTCCAGAAACGTCCAGGCCGTGCTTCCGCTGTA
CAAGCATTACAGCGGAGGCTGGGCACTGCAGTGCGAGCTGGGTGCGCCAG
GTGTTGGGGCACCGGTCCCTAAACTGCGCCTGCTTCGCACAGGCCAGGTC
CGCCATGTTGTTCTTCGTCTCCTCGGGAAAAAAATGGCCGAAGAACAAGG
AGGGGCGGCCCTGGCACGGAGGAGGGGCGATCATGCCCAAGCACGCCACG
AGAGGTGCGATGGTGACCCGCTTCAGAATCATCGTGGCTGTGTGCGCCAA
AACACAAGTTCGCTCCGGGTTGGTGGCGGTGGTGCTGTCTTGGTATAGGG
CGCACCTCCACAGGGGTCCAGAAACGTCCAGGCCGTGCTTCCGCTGTACA
AGCATTACAGCGGAGGCTGGGCACTGCAGTGCGAGCTGGGTGCGCCAGGT
GTTGGGGCACCGGTCCCTAAACTGCGCCTGCTTCGCACAGGCCAGGTCCG
CCATGTTGTTCTTCGTCTCCTCGGGAAAAAAATGGCCGAAGAACAAGGAG
GGGCGGCCCTGGCACGGAGGAGGGGCGATCATGCCCAAGCACGCCACGAG
AGGTGCGATGGTGACCCGCTTCAGAATCATCGTGGCTGTGTGCGCCAAAA
CACAAGTTCGCTCCGGGTTGGTGGCGGTGGTGCTGTCTTGGTATAG
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