mRNA_S-dermatodea_contig12826.1727.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12826.1727.1
Unique NamemRNA_S-dermatodea_contig12826.1727.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A6H5KE64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KE64_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 1.540e-43
Identity = 98/129 (75.97%), Postives = 101/129 (78.29%), Query Frame = 1 
Query:   10 MGPFRGTPAAVATALVLAAFSAPP---VAFVGGFVVPASSSAIARSTRGVSDVIVSATSPVRRA------GRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            MGPFR TP AVA AL LAA S+P    V  VGGFVVP S+S IARST G    IVSA S VRR+      G  STALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS
Sbjct:    1 MGPFRSTPVAVAAALALAASSSPSSGIVTLVGGFVVPPSASTIARSTPGAG--IVSAQSHVRRSPSWRTSGGPSTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 127
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: W7TN53_9STRA (Membrane-associated 30 kDa protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN53_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.610e-19
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:  208 ALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            A+QMNLADRF RV KANLN++LQ  EDPEKILEQAVEDMQKDL+KIRQSYAEVS
Sbjct:   55 AVQMNLADRFFRVVKANLNSVLQNLEDPEKILEQAVEDMQKDLIKIRQSYAEVS 108
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A7S2H6D6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H6D6_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.360e-18
Identity = 45/62 (72.58%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:  184 RRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            R + R+STAL MNL DRF RVAKAN+NNIL++ EDPEKI+ QAVEDMQ DLVK+RQSYAE++
Sbjct:   43 RSSSRSSTALSMNLFDRFSRVAKANVNNILKSLEDPEKIMNQAVEDMQADLVKVRQSYAEIT 104
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A836CIH9_9STRA (PspA/IM30 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIH9_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.410e-18
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  100 FVVPASSSAIARSTRGVSDVIVSATSPVRRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            F+ P++SS+   + R V+     A SPV       +  QMNLADRF+RVAKANLN++LQ  EDPEK+LEQAV+DMQ+DLVK+RQSYAEVS
Sbjct:   23 FIAPSASSSFTGTGRVVA---YRAASPVHL-----STTQMNLADRFMRVAKANLNSLLQKVEDPEKVLEQAVDDMQRDLVKVRQSYAEVS 104
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A1Z5KB53_FISSO (Phage shock protein A n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KB53_FISSO)

HSP 1 Score: 87.4 bits (215), Expect = 3.070e-18
Identity = 45/56 (80.36%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  202 STALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            STALQMNL DRF RVAK+NLNNIL+  EDPEKI+ QAVEDMQKDLV +RQSYAEV+
Sbjct:   37 STALQMNLFDRFTRVAKSNLNNILKNLEDPEKIMTQAVEDMQKDLVSVRQSYAEVT 92
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A7S2XXS6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXS6_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.730e-18
Identity = 45/61 (73.77%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:  187 RAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            R+ R  T L MN+ADRF+RVAKAN+NN+L   EDPEKILEQAV DMQKDLV +RQSYAEVS
Sbjct:   69 RSVRFDTGLHMNMADRFMRVAKANINNMLSKVEDPEKILEQAVLDMQKDLVNVRQSYAEVS 129
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A7S3K4X7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4X7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.350e-18
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:  151 SDVIVSATSPVRRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEV 366
            S +I S+T  VR        + MN+ DRF RVAKAN+NN+L  WEDPEK+L QAVED+QKDLVKIRQSYAEV
Sbjct:   28 SKLITSSTKFVRSQYTQRGVVSMNIFDRFSRVAKANINNVLNKWEDPEKVLNQAVEDLQKDLVKIRQSYAEV 99
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: B7FWP5_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWP5_PHATC)

HSP 1 Score: 85.9 bits (211), Expect = 1.540e-17
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:  184 RRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            R A  +S+ L MNL DRF RVAK+NLNNILQ  EDPEKI+ QAVEDMQ DLVK+RQSYAEV+
Sbjct:   45 RAASTSSSTLHMNLFDRFQRVAKSNLNNILQNLEDPEKIMNQAVEDMQADLVKVRQSYAEVT 106
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BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A7S3L6Z1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L6Z1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.040e-17
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  202 STALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            STAL MNL DRF RVAK+NLNN+L+  EDPEKI+ QA+EDMQKDLVK+RQSYAEV+
Sbjct:   46 STALHMNLFDRFSRVAKSNLNNVLKNLEDPEKIMTQALEDMQKDLVKVRQSYAEVT 101
[Close]
BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Match: A0A7S1D0V6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D0V6_CYCTE)

HSP 1 Score: 85.1 bits (209), Expect = 2.940e-17
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:  178 PVRRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQAVEDMQKDLVKIRQSYAEVS 369
            P R A   +TAL MN+ DRF RVAKAN+NNIL+  EDPEKIL QA+EDMQ DLVK+RQSYAE++
Sbjct:   45 PRRAATATTTALNMNIFDRFSRVAKANINNILKNLEDPEKILNQALEDMQGDLVKVRQSYAEIT 108
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12826.1727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE64_9PHAE1.540e-4375.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TN53_9STRA2.610e-1985.19Membrane-associated 30 kDa protein n=2 Tax=Monodop... [more]
A0A7S2H6D6_9STRA1.360e-1872.58Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A836CIH9_9STRA2.410e-1858.89PspA/IM30 family-domain-containing protein n=1 Tax... [more]
A0A1Z5KB53_FISSO3.070e-1880.36Phage shock protein A n=2 Tax=Fistulifera solaris ... [more]
A0A7S2XXS6_9STRA3.730e-1873.77Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3K4X7_9STRA9.350e-1863.89Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
B7FWP5_PHATC1.540e-1772.58Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S3L6Z1_9STRA2.040e-1776.79Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1D0V6_CYCTE2.940e-1768.75Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12826contigS-dermatodea_contig12826:144..2371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.9e-36
Seed eggNOG ortholog2880.D7FR71
KEGG koko:K03969
GOsGO:0000229,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0008150,GO:0009295,GO:0009507,GO:0009508,GO:0009526,GO:0009528,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009657,GO:0009668,GO:0009706,GO:0009941,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0016050,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042170,GO:0042646,GO:0042651,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061024,GO:0071840
EggNOG free text desc.thylakoid membrane organization
EggNOG OGs2QSHK@2759,COG1842@1
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionProbable membrane-associated 30 kDa protein, chloroplast precursor
Ec32 orthologEc-08_005160.1
Exons3
Model size369
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12826.1727.1prot_S-dermatodea_contig12826.1727.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12826 144..2362 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.9391525-CDS-S-dermatodea_contig12826:143..2151622924263.9391525-CDS-S-dermatodea_contig12826:143..215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 144..215 -
1694079135.1099837-CDS-S-dermatodea_contig12826:143..2151694079135.1099837-CDS-S-dermatodea_contig12826:143..215Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 144..215 -
1622924263.9497254-CDS-S-dermatodea_contig12826:1155..12941622924263.9497254-CDS-S-dermatodea_contig12826:1155..1294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 1156..1294 -
1694079135.154602-CDS-S-dermatodea_contig12826:1155..12941694079135.154602-CDS-S-dermatodea_contig12826:1155..1294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 1156..1294 -
1622924263.9631305-CDS-S-dermatodea_contig12826:2213..23621622924263.9631305-CDS-S-dermatodea_contig12826:2213..2362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 2214..2362 -
1694079135.1699023-CDS-S-dermatodea_contig12826:2213..23621694079135.1699023-CDS-S-dermatodea_contig12826:2213..2362Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12826 2214..2362 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.9730358-UTR-S-dermatodea_contig12826:2362..23711622924263.9730358-UTR-S-dermatodea_contig12826:2362..2371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12826 2363..2371 -
1694079135.1797438-UTR-S-dermatodea_contig12826:2362..23711694079135.1797438-UTR-S-dermatodea_contig12826:2362..2371Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12826 2363..2371 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12826.1727.1

>prot_S-dermatodea_contig12826.1727.1 ID=prot_S-dermatodea_contig12826.1727.1|Name=mRNA_S-dermatodea_contig12826.1727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
MGPFRGTPAAVATALVLAAFSAPPVAFVGGFVVPASSSAIARSTRGVSDV
IVSATSPVRRAGRASTALQMNLADRFLRVAKANLNNILQTWEDPEKILEQ
AVEDMQKDLVKIRQSYAEVS
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mRNA from alignment at S-dermatodea_contig12826:144..2371-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12826.1727.1 ID=mRNA_S-dermatodea_contig12826.1727.1|Name=mRNA_S-dermatodea_contig12826.1727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2228bp|location=Sequence derived from alignment at S-dermatodea_contig12826:144..2371- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAAACGGTATGGGTCCTTTCCGTGGCACGCCCGCGGCGGTCGCTACGGC
TCTGGTATTGGCCGCATTCTCGGCACCTCCCGTCGCGTTCGTCGGGGGTT
TCGTAGTGCCTGCTTCGTCTTCCGCAATCGCCAGGTCAACACGAGGGGTG
AGTGATGTGTCATCGTTGTATGTGTGTGTGCGTGTGTGTGTTCGTTTGTT
TGTTTTGTTTTGTTTTGTTTTTTCTTACTATAATAGTCGATAGCCACGGC
TACGGGCGTGAGGCGCGAGTTGGCAGGCGGTGTATGTGTGGGTTTGGAAA
ATCAGGCCACTTCCTTGTGAAGGACTACTCTAAAAACCCTATTATATATA
GTGTATACCAGGTACCGGGTAGGTATTAAGATACTATAAGTATTTCTCCA
TATGTCGGCCTCGTGTTTTTTGCATCAAGGCTCCACTGTTAATTCTAAAC
AAACAAATGTGCAAAGCGCTATTAGTGAATAAAGATACTACTTGTATATC
TACGAGGTGTGTCATCTTGCTGTAAGTTACTTCATTGCAGATTGATTGAT
TGATTGGTTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTG
AAATGTAATCACACTTACAACGGTTTTGCCGATCCCGCTCGTGGTCAGAT
GAAAAATCGAGAATTCGAAAAAACTTACTATACGGAAACACAGCTACTGT
ATAATACTGTATTCTTATACAATACAATACGAATTAATCAACACAAAACA
AACGCTCGGAATCAGAGGGAACATAGTTACATACATACTGGTATCTCGGA
ACTTAGGTCTGCTAAAAAAAAAAAAAAAAAAACTGCCCCCTCTCCTACAA
GAAAGGCTCATCACTACTAACTACTAACTACCCACAATGCTCTACCCTAG
TCTGGCAACCTTACCTATCGCGCAACTATCGCATAAACAAAAACGCATGT
ATGCTACAAGTACAGTACTCCTTTACCGCTACGCTCACCCAACCACCACC
CCCCCCACCCCCCCCACCCCCCCCCTCGAAATGGAATTTGCCTCTTGTCT
CTAAATCTCTCTTGCGTCGTGACAGAGGATCGTGTCGGCAACCTCCCCGG
TCCGCCGCGCGGGTCGCGCGTCCACGGCCCTCCAGATGAACCTCGCCGAC
CGCTTTCTTCGCGTGGCGAAGGCCAACCTCAACAACATCCTGCAGACGTG
GGAAGACCCGGAGAAGGTCTGCCTGCCCCCCCCCCCCACCCCCCCTCATA
GGAGCAAACGTTTCGAGCCACCTTTGGCAAGGCAAAGTAGGAAGGAACAA
ATGGCCATCGGTGATCGATCGATCCTGTGGGAACAATGCTCCGTCCTCCT
GAAGATATGATAGCCGCGTGGTGAATGGCCTAACAGCTGAGGCATGCAAA
CCTTGCGTGCACCCCTGAAACAATGAAATATTTTTAAAACAGGTCAAAAT
TTGTTATAGTACGGAGGAGCATGGTAAACAGGTCAAAATTTGTCACAAAT
CTTAACTTACCCCTTTTGGTACTAGCCCCCTGTTTGGAGCGCCTGTTAGC
ACGTAAAAGAGGCGTGCTTGAAACGGGGCTGTAGCTGTCGACTGGCATCG
AGAGAGCTTTTGGTCGTTTCGGAGAGCCCGATTAAATATTGGTACTAATT
TAATAGTGCCAAAAGGGTTAAGCAAAACAAAATTGGCCGGAACGATTGGG
TAATATTCACCGTGGTGCTTGTCTTACAGGCCAAACCTCGTTATTGTTTT
TTGTTCGTGAGTTGTTTGCTGTGTTGTGTTTAGGTTTTCATGGTCGAAAT
AGTTGCGTTTTTATGGTCGTGAGATTTGGTCCTGATTACTGCTGTGTACC
TCCGTAAATAGCGTTGAGGTCCGGTCTTGGGGTCCAATAGTTTTGGTACA
GGAAAAGAAGGCCCAACCTAACTCAGTGGAGACCTCAGTCCACCCCCACC
CCCCCCCCCCCCNNNNNNNNNNGGTGTGGGGGCCGGTTTGGTGGGAGAGT
TGTTTTGGGGGCGAAAAGCAAAGCCCAAACCCACTCGCTGCATCCCCCCC
CCCCCCCCCCCCCCCCCCCCTCCGACCCGAGACCCCTCGCCCACCTCACG
TCCCCATCTCACCCCTTTACTCCCGTTTTATTGTAACTGGCCCTTCTGCC
GAACAGATCCTGGAGCAAGCCGTGGAGGACATGCAGAAAGACCTGGTGAA
GATCAGGCAGTCCTACGCCGAGGTGAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12826:144..2371-

>mRNA_S-dermatodea_contig12826.1727.1 ID=mRNA_S-dermatodea_contig12826.1727.1|Name=mRNA_S-dermatodea_contig12826.1727.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig12826:144..2371- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGTCCTTTCCGTGGCACGCCCGCGGCGGTCGCTACGGCTCTGGTATT
GGCCGCATTCTCGGCACCTCCCGTCGCGTTCGTCGGGGGTTTCGTAGTGC
CTGCTTCGTCTTCCGCAATCGCCAGGTCAACACGAGGGGTGAGTGATGTA
TGGGTCCTTTCCGTGGCACGCCCGCGGCGGTCGCTACGGCTCTGGTATTG
GCCGCATTCTCGGCACCTCCCGTCGCGTTCGTCGGGGGTTTCGTAGTGCC
TGCTTCGTCTTCCGCAATCGCCAGGTCAACACGAGGGGTGAGTGATGTGA
TCGTGTCGGCAACCTCCCCGGTCCGCCGCGCGGGTCGCGCGTCCACGGCC
CTCCAGATGAACCTCGCCGACCGCTTTCTTCGCGTGGCGAAGGCCAACCT
CAACAACATCCTGCAGACGTGGGAAGACCCGGAGAAGGATCGTGTCGGCA
ACCTCCCCGGTCCGCCGCGCGGGTCGCGCGTCCACGGCCCTCCAGATGAA
CCTCGCCGACCGCTTTCTTCGCGTGGCGAAGGCCAACCTCAACAACATCC
TGCAGACGTGGGAAGACCCGGAGAAGATCCTGGAGCAAGCCGTGGAGGAC
ATGCAGAAAGACCTGGTGAAGATCAGGCAGTCCTACGCCGAGGTGAGCAT
CCTGGAGCAAGCCGTGGAGGACATGCAGAAAGACCTGGTGAAGATCAGGC
AGTCCTACGCCGAGGTGAGC
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