mRNA_S-dermatodea_contig12820.1726.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12820.1726.1
Unique NamemRNA_S-dermatodea_contig12820.1726.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12820.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12820contigS-dermatodea_contig12820:4382..6200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size263
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12820.1726.1prot_S-dermatodea_contig12820.1726.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12820 4382..6128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.8649879-CDS-S-dermatodea_contig12820:4381..44261622924263.8649879-CDS-S-dermatodea_contig12820:4381..4426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12820 4382..4426 -
1694079135.0705314-CDS-S-dermatodea_contig12820:4381..44261694079135.0705314-CDS-S-dermatodea_contig12820:4381..4426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12820 4382..4426 -
1622924263.874981-CDS-S-dermatodea_contig12820:5984..61281622924263.874981-CDS-S-dermatodea_contig12820:5984..6128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12820 5985..6128 -
1694079135.0789437-CDS-S-dermatodea_contig12820:5984..61281694079135.0789437-CDS-S-dermatodea_contig12820:5984..6128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12820 5985..6128 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.8837523-UTR-S-dermatodea_contig12820:6128..62001622924263.8837523-UTR-S-dermatodea_contig12820:6128..6200Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12820 6129..6200 -
1694079135.0905511-UTR-S-dermatodea_contig12820:6128..62001694079135.0905511-UTR-S-dermatodea_contig12820:6128..6200Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12820 6129..6200 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12820.1726.1

>prot_S-dermatodea_contig12820.1726.1 ID=prot_S-dermatodea_contig12820.1726.1|Name=mRNA_S-dermatodea_contig12820.1726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
MADASESDDVMAEHEEGLDSDDDDEVSLLEIDDEELSLAMKEAGISIKVD
AEGGGGSVEVEVV
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mRNA from alignment at S-dermatodea_contig12820:4382..6200-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12820.1726.1 ID=mRNA_S-dermatodea_contig12820.1726.1|Name=mRNA_S-dermatodea_contig12820.1726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1819bp|location=Sequence derived from alignment at S-dermatodea_contig12820:4382..6200- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACTAACTAGCTGCTGTAGGAGTACTCCTCTTACACTAGACTTCTCTCTC
GCTCTCTGTGTGTGTCCCCGCCATGGCCGATGCCAGCGAAAGCGACGATG
TGATGGCCGAGCACGAGGAGGGTCTCGACTCGGACGACGACGACGAGGTG
TCACTGCTGGAGATCGACGATGAGGAGCTGTCACTTGCCATGAAGGAGGC
GGGCATTTCCATCAAGGTGGGCGGCCGCTGGGTTGTTGCTGTGGCTGCGC
GCAGTCAGAGTCCACGCCGAACTTCCCTCTGTGCAAATTGACCTCTGTCG
CTCACGCGCACGCGGGCGAGCGAGAGAGTCGGTGCAACAGCCAAAAACTG
TTTTTTGGCGCCTCCATTTCTTGCTACAAATTATCATACTTGTACACAGA
CTCCAGCTGTGGTGCTGTCCTGTATACACAACCAAAAACCATCTTCCGTT
CCATCTTCAATCGATTTTATCGAACATGTTCCGACGAAGTGTGGATGAAT
GACTGATGAATCTGCCGTTTTTTTCTTAGGTATGCGCAAGAGAGTAAGGA
CGTACCTACTCTCGTCCCCTGGAGTGTGCCCGTGAGTTAGGGATGTACAG
GTGAACTAGATTATGTTTTTATAAAATTATAAAATGAAATAAAGGAGACC
TCCCATGCCCCATGACCTTGTACAATATCGTATTACAGTATAGTATTTAC
AAAAACCCTGTTCAAGTAGAGTACTGGTACATCATTAGCGAGAGCAGTCG
CTTGTCACCGCGGACCGGGTGTATCGGGCGCTCCTCCTGCCCATCTGCTG
CGCGCGCGTTTAAGCCCCCCCACCCCCCCCGCCCCCAACCCCCACCCCTC
CCCCCGTAGTTAACGAAAACGATCCCGAGAGGACGGGCAGCAAGCAGCTG
CATCATCATCATCATCATCGTCAGCAGCAGCAGCAGCAGCGGCAGTTGCA
AGCTCGAAACCTATTGCAAGGTCGCAACCTACAGTATGCATATCCTTGCG
ACAACAGACACAGTACAAGTCAAGTACAAGTGACAACAAATACCAGATAC
AGAGTATGATACATTCAAGCAACGTGATGTGAAATTACTGATAATTACCG
TCCAGTATAAGCGGACGCCTGTGTAATTTAGATTTAGAACCTCACAAAAC
CATACAAGTATGTACTTGTATGAATTTACTTATTTTCTTTTGGCTGTCAC
AGGAAGGCGTCCTCTGCCTCCCGACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCTCCCCCCCCCCCCCCCGCCCCCTCGCCGCTCGCTCTTCCTCCCCA
TCCCACCCCACCCCCCTGCCTTCGCTGTCACCNNNNNNNNNNTGAATACA
TCCAAAAACCACAAAATGATAGCCCTGTTTTAATTTTCTTTTTTTTTTTT
TCGCCTCCCCCGAAAGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCGCCCCTCCCTCGTCCATTCGCGTCGCCCGGTATCATATACAGTATAT
GCCCAATCAGCCCATGGCACATCGGTTGCCGTCGCAAACGCACGGATAAT
GCATAAGGCTATTACAAGCCAGCTGTAATGATATATTACCATGTTTGTAA
AACGACCCAGCCCGGCCGGCGAAAACCCGGCATATCCCTCCGTGTGTCTG
TCTTGTGACGCGTGGTCTGTGTCCGCCTGGATGTGATATTATACGACATG
CGTTTGCATAACTATAAGTACACCACCACCCCCCCCACTTCATCCTGTGT
CCCGTCACATTGGCAATCGGCAAGGTGGATGCGGAGGGCGGAGGAGGGTC
TGTGGAAGTAGAGGTTGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12820:4382..6200-

>mRNA_S-dermatodea_contig12820.1726.1 ID=mRNA_S-dermatodea_contig12820.1726.1|Name=mRNA_S-dermatodea_contig12820.1726.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig12820:4382..6200- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGATGCCAGCGAAAGCGACGATGTGATGGCCGAGCACGAGGAGGG
TCTCGACTCGGACGACGACGACGAGGTGTCACTGCTGGAGATCGACGATG
AGGAGCTGTCACTTGCCATGAAGGAGGCGGGCATTTCCATCAAGATGGCC
GATGCCAGCGAAAGCGACGATGTGATGGCCGAGCACGAGGAGGGTCTCGA
CTCGGACGACGACGACGAGGTGTCACTGCTGGAGATCGACGATGAGGAGC
TGTCACTTGCCATGAAGGAGGCGGGCATTTCCATCAAGGTGGATGCGGAG
GGCGGAGGAGGGTCTGTGGAAGTAGAGGTTGTGGTGGATGCGGAGGGCGG
AGGAGGGTCTGTGGAAGTAGAGGTTGTG
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