mRNA_S-dermatodea_contig9185.17249.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9185.17249.1
Unique NamemRNA_S-dermatodea_contig9185.17249.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A2R5G1J5_9STRA (Transcription factor MYB3R-3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G1J5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.120e-19
Identity = 40/65 (61.54%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERR 195
            QCRERWC +LDPS+N G+WT +ED +L S +A  G  WA IAR +PGRTEHAVK RF+++ R RR
Sbjct:  146 QCRERWCSNLDPSINKGSWTAQEDSILLSTQASQGNCWAHIARLLPGRTEHAVKTRFRSIQRARR 210
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A2D4BGY2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BGY2_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 2.240e-19
Identity = 37/68 (54.41%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERRVGG 204
            QCRERWC+HLDP++N G +T+EEDR++  ++A+LG +W+ IA+++ GRTE AVK R+K+L R R+  G
Sbjct: 2325 QCRERWCNHLDPNINKGAYTEEEDRIILEMQAKLGNRWSIIAQQLKGRTEDAVKIRWKSLMRGRKAAG 2392
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.030e-19
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERRVGGV--GAQTGRTSKGLG 243
            QCRERWCHHLDPS+N G +T+EED+++   +A+LG +W+ IA  +PGRTE+++K R K L R+   G    G ++G TS   G
Sbjct:  201 QCRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIRCKALQRKVLSGSPSSGGRSGSTSSPAG 283
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A0P1AP41_PLAHL (Transcription factor, Myb superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AP41_PLAHL)

HSP 1 Score: 89.4 bits (220), Expect = 5.550e-19
Identity = 36/66 (54.55%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERRV 198
            QCRERWC+HLDP++N G++T++EDR++  ++A+LG +W+ IA+++ GRTE AVK R+K+L R RR 
Sbjct:  237 QCRERWCNHLDPNINKGSYTEDEDRIIMEMQAKLGNRWSIIAQQLKGRTEDAVKIRWKSLMRGRRA 302
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 7.030e-19
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRE 189
            QCRERWCHHLDPS+N G +T+EED ++   +A LG +W+ IA  +PGRTE+++K R K L R+
Sbjct:  194 QCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIRCKALQRK 256
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A8K1CJV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJV3_PYTOL)

HSP 1 Score: 89.0 bits (219), Expect = 7.590e-19
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERRV 198
            QCRERWC+HLDP++N G +T+EEDR++  ++ARLG +W+ IA+++ GRTE AVK R+K+L R ++ 
Sbjct:  250 QCRERWCNHLDPNINKGAYTEEEDRIILEMQARLGNRWSIIAQQLKGRTEDAVKIRWKSLMRGKKA 315
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A7S2BB32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BB32_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.290e-18
Identity = 37/65 (56.92%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERR 195
            QCRERWCHHLDPS+  G +T +ED+ +  ++A+ G KWA IA+ +PGRTE+AVK R+K L R R+
Sbjct:   10 QCRERWCHHLDPSIKKGEYTSDEDKTILDMQAKNGNKWAQIAQMLPGRTENAVKIRWKALDRSRK 74
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A418B0H6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B0H6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.340e-18
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERR 195
            QCRERWC+HLDP++N G +T EED+L+  ++A+LG +W+ IA+++ GRTE AVK R+K+L R RR
Sbjct:  196 QCRERWCNHLDPNINKGNYTREEDQLIVDMQAKLGNRWSVIAQQLSGRTEDAVKIRWKSLMRTRR 260
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BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A024UPD7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UPD7_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.360e-18
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERR 195
            QCRERWC+HLDP++N G +T EED+L+  ++A+LG +W+ IA+++ GRTE AVK R+K+L R RR
Sbjct:   72 QCRERWCNHLDPNINKGNYTREEDQLIVDMQAKLGNRWSVIAQQLSGRTEDAVKIRWKSLMRTRR 136
[Close]
BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Match: A0A024UM09_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UM09_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-18
Identity = 37/65 (56.92%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTEHAVKGRFKTLSRERR 195
            QCRERWC+HLDP++N G +T EED+L+  ++A+LG +W+ IA+++ GRTE AVK R+K+L R RR
Sbjct:  196 QCRERWCNHLDPNINKGNYTREEDQLIVDMQAKLGNRWSVIAQQLSGRTEDAVKIRWKSLMRTRR 260
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9185.17249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2R5G1J5_9STRA2.120e-1961.54Transcription factor MYB3R-3 n=1 Tax=Hondaea ferme... [more]
A0A2D4BGY2_PYTIN2.240e-1954.41Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A6H5KJU6_9PHAE4.030e-1949.40MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A0P1AP41_PLAHL5.550e-1954.55Transcription factor, Myb superfamily n=1 Tax=Plas... [more]
D8LM16_ECTSI7.030e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CJV3_PYTOL7.590e-1954.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2BB32_9STRA1.290e-1856.92Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A418B0H6_9STRA1.340e-1856.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UPD7_9STRA1.360e-1856.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UM09_9STRA1.400e-1856.92Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9185contigS-dermatodea_contig9185:4063..6872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog157072.XP_008863559.1
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size245
Cds size243
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9185.17249.1prot_S-dermatodea_contig9185.17249.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9185 4064..6872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.9177403-CDS-S-dermatodea_contig9185:4063..41321622925391.9177403-CDS-S-dermatodea_contig9185:4063..4132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 4064..4132 -
1694079902.3912716-CDS-S-dermatodea_contig9185:4063..41321694079902.3912716-CDS-S-dermatodea_contig9185:4063..4132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 4064..4132 -
1622925391.9299026-CDS-S-dermatodea_contig9185:6397..64781622925391.9299026-CDS-S-dermatodea_contig9185:6397..6478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 6398..6478 -
1694079902.4060705-CDS-S-dermatodea_contig9185:6397..64781694079902.4060705-CDS-S-dermatodea_contig9185:6397..6478Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 6398..6478 -
1622925391.9437923-CDS-S-dermatodea_contig9185:6779..68721622925391.9437923-CDS-S-dermatodea_contig9185:6779..6872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 6780..6872 -
1694079902.4174914-CDS-S-dermatodea_contig9185:6779..68721694079902.4174914-CDS-S-dermatodea_contig9185:6779..6872Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9185 6780..6872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9185.17249.1

>prot_S-dermatodea_contig9185.17249.1 ID=prot_S-dermatodea_contig9185.17249.1|Name=mRNA_S-dermatodea_contig9185.17249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=81bp
QCRERWCHHLDPSVNHGTWTDEEDRLLCSLEARLGTKWAAIAREMPGRTE
HAVKGRFKTLSRERRVGGVGAQTGRTSKGLG
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mRNA from alignment at S-dermatodea_contig9185:4063..6872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9185.17249.1 ID=mRNA_S-dermatodea_contig9185.17249.1|Name=mRNA_S-dermatodea_contig9185.17249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2810bp|location=Sequence derived from alignment at S-dermatodea_contig9185:4063..6872- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCCGAGAGCGCTGGTGCCATCACCTCGACCCTAGCGTCAACCACGG
CACCTGGACCGACGAGGAGGACCGCTTGCTCTGCTCCCTGGAGGTGGGCC
GCGCACCGCACAGTATGGTTTGATCGTGTTGTCCGCGACCCTTGCGTTGT
AGCTGCGAACTTGCTCCGGAGGGCTGACTCGAGCGTCAATTTTATACCGG
GCTTGTTCATGAACAAGGCCTGGAGGTGCTTGTATTTCATCGAATAAACG
TTTTTTGGGGAGGAGCCTACTACGTTCGCGTTGTGGGCACCAGCAGCGTC
CTGCTTGGTGTGGTACTTGCTGAGACGATTCCGCGCGCGAAGAAAACCCC
CACGTGACCTCGAAGGCGTTTGAAACCAATCACACATGGCGCAGGCTCGT
CTGGGGACGAAGTGGGCCGCGATAGCGAGGGAGATGCCTGGCCGCACGGA
GCACGCCGTCAAGGGCAGATTCAAGGTGATGCCACAGTAGTATTAATAGT
AATAGCGCTATGTAGCCGCGCCGAGGGTGCCCGTCCCTTGAAACAAGTGT
TGTGATCTTCGGCGCGCGTACAAAATGAAAACATTGAATATAAAAATAGC
GCTCGGAACTATTTCCGGCAGTGTTTATGAGAAGACTTTTAATAGTCTTC
GAAACCCGCAAAGTGCTTCTTGAGAGGGGAAGTTTCCTTGCACCGCGCGG
CGTCGCTGTTTTGCGGGACGTCGGCGTCTTTGGTCAAACTTATATCCACG
GCAAGCCGAGGGCCCAGCAGAGTGAGGCGTCGATCGTAGGACTTGGCGTG
TCTCTCGAGCTGGGTGTGGCGCTCTCCTTTTTGCGCTCTGCTCATGCCTC
GAAGGGCAGGCTCAGATCCAAAAGGCGAGGGCGTGGAAAAACAAACAATT
GTTCTCTGCGTGTTGTTGTCTCTCCGTTGTATCATATCATTTTTTGGAGG
AGCGAAGACAAGAAGCGTAGCTCCCTCCAGATCGCCACGGGCACTCCTAC
TGCGCTTACAGAGTTGTCCGGCGGGCCTGTGCTGCGTTGTTTCCTGTTGG
TTTCGGATTATTTACTGCTGCAGACGAACCTCCTCGCGGGCGCTGTCATG
ACCACCACTGTTTTCGGGGAAATTATCAACGTAATATGTAGCCGGTACCG
AGTAGGCCAGTAGACGCCCCCCAAGCTAACCTATATATATGATTTAGAGT
TGAACTTTAACGTAGGTGGCGCAACCCCTTGTGAGGGGTATCATACCCTT
ATCACAAAAGCCCCTGTCTACAGGTGGCTTCCAAGGTGACGACATGGGCA
GCTGTGGCATGCATGTGTGGGCTACACTGCTGCTGCTGTTGCGCAGACAA
AACCCCCGACTGTTCTGCCGAGAGCGAGTTGATGCAAACGTTTTTTGGGT
TCAGAATCGGTGCGCTCGACTCCACGAGCCACTATAATACTATCGCTTCG
GCACGCACCAGAAGCACACGTTTAGACACGTTGCCGTAGAGGTACGGCCT
CCGGTGTGTCACTATCTCGCGCAGTAGAGGTCCGCGCCATGGCGGTGGCG
GCACTACATTTCGCGCGAAACCGCCAATCTTCTCGCGTGATCGAATCTTT
GGGAGCTGAGCGCGCGCAGTGTTTTTTGGCGCATTTTTTTTCACGTGTTT
TTCGTTATTTCATATTTGACGGTTTGGTCTTGCCGTTCTTTGGCCAATCT
CTATAACTCGACCCCTCCTACCGCGACTGGCGAGACGAGACCGAACAGAT
ACGTTGAAAACACCTCCCTTGGTAGAATACCGCAAGCTGGCTGTGTGCAG
CATGCCTACATGAGGGGAGCTATGCTTAATTTTCACAGATGGCTGACAGC
GGTAACTCGGACTCAAGTTTGGGTCAGGCTCAGGGTCGTGCGTGCGATCA
TTGTCACATGCGCAATGACACCTGACTCTGTCTGGCTTCTCTCGTTTTTC
GGTCGTTAAGATAACGGGACAATGCTCTGTTTGTTCTGTGGATCGAATGC
GTGCCATCCCATTTGCGTGACCCCAAGCCTCGCTAGTCGCTATTTTACCA
AGAGGTAAGCGTGAACGGGTCTCTACTACACGCCGCTACACATTTATCTG
TCGAGTTAAAAGCTATGACCCATATGACGTGGCGTGCCATGATGTTGAAC
CGAACGACGTTTTTTTTCCGTTAGGGAAAAATTTCTGCTCACGAGTCCCA
AGAGACGTATAGGTTTTCTTCCGATTCCCCTGCGGAAATCTCGCAGGATT
GAGTGAGAAAATTCGACACCCTGCCCGTGAGCCGCGGGCGTGGTAAACAC
ACACAAGCGTGAACGCCAAATCAAGGCGGGAGCGGGGGGAGGGAAGATGG
CACGAATCACGCCGCCCTATCGCGAGAAATTACGAAGGTCTGACGTGGGA
CGAAAAACTCTCCCCCAAAACATGCCAGACTGCTGTCATAGCGCATCTTA
TCCCACGAGAACGTATCACAGCGTCCATCGCAGAAGCCACATAACATACG
CATACGCGAGGACACTTTTTTGGTGCACTTGGCTGGATGGGGTATCAACG
GCGCCCTCCTATAAACGACCGACCATTTTTTTCGTTTGTTTCAGAAAGAG
AGCCCGCCGCCCTCTTATGTGCCCGAGTGTTCCCGCTAACCGCCGTCTCG
ATGAGCAACTGACGTCTTCGCGACCCGCCCTCGTGTGTTCCCGCGTGGAA
CCGCGCCGCTGCTGCCATTGTTATTGGTGACGTGCTGCAGACACTGTCGA
GGGAGCGTCGAGTGGGTGGGGTGGGTGCCCAAACAGGACGCACTAGCAAA
GGATTGGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9185:4063..6872-

>mRNA_S-dermatodea_contig9185.17249.1 ID=mRNA_S-dermatodea_contig9185.17249.1|Name=mRNA_S-dermatodea_contig9185.17249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig9185:4063..6872- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTGCCGAGAGCGCTGGTGCCATCACCTCGACCCTAGCGTCAACCACGG
CACCTGGACCGACGAGGAGGACCGCTTGCTCTGCTCCCTGGAGCAGTGCC
GAGAGCGCTGGTGCCATCACCTCGACCCTAGCGTCAACCACGGCACCTGG
ACCGACGAGGAGGACCGCTTGCTCTGCTCCCTGGAGGCTCGTCTGGGGAC
GAAGTGGGCCGCGATAGCGAGGGAGATGCCTGGCCGCACGGAGCACGCCG
TCAAGGGCAGATTCAAGGCTCGTCTGGGGACGAAGTGGGCCGCGATAGCG
AGGGAGATGCCTGGCCGCACGGAGCACGCCGTCAAGGGCAGATTCAAGAC
ACTGTCGAGGGAGCGTCGAGTGGGTGGGGTGGGTGCCCAAACAGGACGCA
CTAGCAAAGGATTGGGAACACTGTCGAGGGAGCGTCGAGTGGGTGGGGTG
GGTGCCCAAACAGGACGCACTAGCAAAGGATTGGGA
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