mRNA_S-dermatodea_contig9176.17239.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9176.17239.1
Unique NamemRNA_S-dermatodea_contig9176.17239.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: D7G0X2_ECTSI (HDAC_interact domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X2_ECTSI)

HSP 1 Score: 405 bits (1040), Expect = 2.520e-129
Identity = 198/223 (88.79%), Postives = 212/223 (95.07%), Query Frame = 1 
Query:    1 MWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKANENTAGARYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHR 669
            MW+NTPLNELDLT SEKGGPSYRHLPKNFPLLSCSERT+LEQSVLND+WVSVPVGSEGGGSDVAFKH+RKN HEDLLFKCEDERFELDMVIEAGSSA+ LL+PM+EEIK  + TAGARYQFK+DRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKT+PVIL RLRQKD+EWRVSRERLNKLWS+VQR TYYKSLDRRS D+KNEDKKAHS+R LVADI HR
Sbjct:  320 MWTNTPLNELDLTLSEKGGPSYRHLPKNFPLLSCSERTSLEQSVLNDLWVSVPVGSEGGGSDVAFKHMRKNQHEDLLFKCEDERFELDMVIEAGSSAISLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDVKNEDKKAHSARVLVADITHR 542
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S3XWL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWL9_HETAK)

HSP 1 Score: 232 bits (591), Expect = 9.550e-72
Identity = 122/231 (52.81%), Postives = 158/231 (68.40%), Query Frame = 1 
Query:    1 MWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKANENTAGAR-----YQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHRCAE 678
            +W + PL+E+D  +  K  PSYR LPK++    CSER+ LE  VLND WVSVPVGSE    + +FKH+RKN +E+ LF+CEDERFE+DMVI++ ++A   L+P+  E++A +   G R      Q+K+D+R LS V L AI RIYGDHGAEILELL+KNP   IPVIL RL+QKD EWR +R+ LNK W  VQ   ++KSLD RS   K  DKK  S R LV ++  R A+
Sbjct:   65 LWYSMPLSEIDFGQCRKCTPSYRALPKDYLRPPCSERSLLEHRVLNDTWVSVPVGSE---DNYSFKHMRKNQYEEALFRCEDERFEVDMVIDSNAAAAAALEPLAREVRALQAAEGTRGGERRLQYKLDKRALSVVHLNAIIRIYGDHGAEILELLKKNPAGAIPVILKRLKQKDAEWRKARQDLNKHWKEVQEKNWHKSLDHRSFYFKQADKKQCSQRALVQEVKERRAD 292
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A6H5KFU2_9PHAE (Sin3a_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU2_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 8.830e-68
Identity = 118/137 (86.13%), Postives = 127/137 (92.70%), Query Frame = 1 
Query:  265 MVIEAGSSAMKLLDPMDEEIKANENTAGARYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHRCA 675
            MVIEAGSSA+ LL+PM+EEIK  + TAGARYQFK+DRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKT+PVIL RLRQKD+EWRVSRERLNKLWS+VQR TYYKSLDRRS DLKNEDKKAHS+R LVADI HR A
Sbjct:    1 MVIEAGSSAINLLEPMEEEIKCIDKTAGARYQFKLDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTVPVILARLRQKDVEWRVSRERLNKLWSNVQRSTYYKSLDRRSIDLKNEDKKAHSARVLVADITHRRA 137
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S1UGB0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGB0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 6.500e-64
Identity = 111/239 (46.44%), Postives = 157/239 (65.69%), Query Frame = 1 
Query:    4 WSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKA-------NENTAGAR-----YQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHRCAERV 684
            W    ++++D T+  +  PSYR LP+ FP   CS R+T +  VLND WVS+PVGSE    + +FKH+R+N +E+ LFKCEDERFE+DMVI++ +S +++L+P+  EI+A          TAG       +Q+K+D R LS V + AI+RIYG+HGAEI ELLRKNP   +PV+L RL+QKD+EWR +R+ L + W  +    ++KSLD RS   + +DK+A S R L  DI+     RV
Sbjct:   99 WYGMAVSDVDFTQCRRCTPSYRALPQYFPRPPCSMRSTDDGKVLNDQWVSLPVGSE---ENYSFKHMRRNTYEETLFKCEDERFEMDMVIDSNASTIRVLEPLAAEIEALRVAEGDGGETAGIAGAVPAFQYKLDPRTLSRVHINAISRIYGEHGAEIQELLRKNPAGAVPVVLNRLKQKDIEWRRARQELARQWKGLMEANFHKSLDHRSFYFRTQDKRAISIRGLTQDIIEAHEARV 334
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.040e-62
Identity = 124/268 (46.27%), Postives = 166/268 (61.94%), Query Frame = 1 
Query:    1 MWSNTPLNELDLTKSEKGGPSYRHLPK--------------------NFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEI-KANENTAGARYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQK--------------------DLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHRCAER 681
            +W +TPL E+D ++  K  PSYR LPK                    ++P  SCSER+ +E SVLND WVSVPVGSE   +   FKH+RKN +E+ LF+CEDERFE+DMVI++ +S +KLL+P+ EEI +  ++ + A YQFK+D+R L  V L AITRIYGD GAE+LELLRKNP   +P+IL RL+QK                    D EWR +R  L++ W  +   TY+KSLDRRS   K+ D++A+  R L+A+I    A R
Sbjct:  636 VWYSTPLAEIDFSQCRKCTPSYRALPKGASQFGWAQFCGTFRASQALDYPRPSCSERSYMEDSVLNDTWVSVPVGSEDSSN---FKHMRKNQYEEALFRCEDERFEIDMVIDSTTSTIKLLEPLAEEIAQLAQHGSNAHYQFKLDKRTLGVVHLNAITRIYGDRGAEVLELLRKNPAGAVPLILKRLKQKXXXXXXXXXXXXXXXXXXXKDTEWRQNRSSLDRQWRDLLERTYHKSLDRRSFYFKSADRRAYGHRALLAEIRDLAAAR 900
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S3HNY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNY2_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.520e-60
Identity = 112/244 (45.90%), Postives = 151/244 (61.89%), Query Frame = 1 
Query:    1 MWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIK-----------------ANENTAGA-------RYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADI 660
            +W   PL+E+D  +  K  PSYR LP+++P   C+ER+  E  VLND WVS+P+GSE      +FKH+RKN +E+ LFKCEDERFE+DMVI++    +++L+P+ EEI                  A   T G        R+ F++++R LS + L +I RIYGDHG EILELLR+NP  TIPV+L RL+QKDLEWR +R  LNK W  V    + +S D RS   +  DKK  S+R LV +I
Sbjct:  192 VWYAVPLSEIDFAQCRKCTPSYRALPRDYPKAKCTERSEEEAKVLNDQWVSIPIGSE---ESYSFKHMRKNQYEEALFKCEDERFEIDMVIDSNMCTIRVLEPLAEEIATLKSIETIPRGTLHGDAATGQTQGGASTSIAPRFSFQLEKRHLSTIHLNSIARIYGDHGEEILELLRRNPAGTIPVLLKRLKQKDLEWRKARTELNKHWREVVEKNHTRSFDHRSFYFRQHDKKYLSTRQLVTEI 432
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BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S2R625_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R625_9STRA)

HSP 1 Score: 210 bits (534), Expect = 1.820e-59
Identity = 112/226 (49.56%), Postives = 152/226 (67.26%), Query Frame = 1 
Query:    4 WSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKANENTAGA------RYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADIL 663
            W++ P+ ELDL++  +  PSYR LP N+P L C+ R+ +EQSVL+D WVSVP+GSE    D AFKHVRKN  E+ LFKCED RFE+DMVIE   +A+++L P+ +EI   + +A +      R QF++D+R LS V  AAI R+YGDHG +IL LL+KNP   IPVI  RL QK  EWR  R+ LN+ W  +    + K+LDR+    K  D+KA S++ LV +I+
Sbjct:  397 WASLPVAELDLSQCARCTPSYRALPDNYPKLQCTLRSPMEQSVLSDKWVSVPMGSE---EDFAFKHVRKNQFEEELFKCEDHRFEIDMVIETNLAAIRVLQPLVDEISELKLSASSNGLPLSRCQFRLDQRGLSTVHFAAIARVYGDHGDDILALLQKNPIGAIPVIHRRLEQKHHEWRKVRQELNRQWRPILEQNFMKALDRQRDTFKQRDRKACSTQQLVNEIM 619
[Close]
BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S4IGZ1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IGZ1_9STRA)

HSP 1 Score: 209 bits (533), Expect = 4.500e-59
Identity = 105/242 (43.39%), Postives = 158/242 (65.29%), Query Frame = 1 
Query:    4 WSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKANENT------------------AGARYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADILHRCA 675
            W + PL+E+D ++  +  PSYR LP+++P   CSER+ +E +VLNDVWVS+PVGSE       F+H+RKN +E++LF+ EDERFE+DMVI++ ++ ++ L+P+ EEI+    +                  AG  +Q+ +D R+L+ +   +I+RIYGD G E+L LL KNP   +P+++ RLRQKD ++R +RE LN+ W  +    YYKSLD RS   +  DK+A S+RTL+A+I  R A
Sbjct:  211 WHSVPLSEIDFSRCRRCSPSYRALPRDYPAPPCSERSVVETAVLNDVWVSLPVGSE---ESYTFRHMRKNQYEEMLFRTEDERFEIDMVIDSNAATLRRLEPIAEEIEVLSKSELHTPGLDKGISAPKAGLAGKSFQYSLDCRILNTIHKNSISRIYGDSGPEMLSLLSKNPAIAVPIVVKRLRQKDHDFRAAREVLNRRWREIALVNYYKSLDHRSLTWRTTDKRATSTRTLIAEIKDRAA 449
[Close]
BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S2R5Z2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5Z2_9STRA)

HSP 1 Score: 210 bits (534), Expect = 6.620e-59
Identity = 112/226 (49.56%), Postives = 152/226 (67.26%), Query Frame = 1 
Query:    4 WSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIKANENTAGA------RYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADIL 663
            W++ P+ ELDL++  +  PSYR LP N+P L C+ R+ +EQSVL+D WVSVP+GSE    D AFKHVRKN  E+ LFKCED RFE+DMVIE   +A+++L P+ +EI   + +A +      R QF++D+R LS V  AAI R+YGDHG +IL LL+KNP   IPVI  RL QK  EWR  R+ LN+ W  +    + K+LDR+    K  D+KA S++ LV +I+
Sbjct:  397 WASLPVAELDLSQCARCTPSYRALPDNYPKLQCTLRSPMEQSVLSDKWVSVPMGSE---EDFAFKHVRKNQFEEELFKCEDHRFEIDMVIETNLAAIRVLQPLVDEISELKLSASSNGLPLSRCQFRLDQRGLSTVHFAAIARVYGDHGDDILALLQKNPIGAIPVIHRRLEQKHHEWRKVRQELNRQWRPILEQNFMKALDRQRDTFKQRDRKACSTQQLVNEIM 619
[Close]
BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Match: A0A7S3MGY4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGY4_9STRA)

HSP 1 Score: 209 bits (531), Expect = 1.540e-58
Identity = 112/244 (45.90%), Postives = 151/244 (61.89%), Query Frame = 1 
Query:    1 MWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWVSVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKLLDPMDEEIK-----------------ANENTAGA-------RYQFKMDRRVLSPVQLAAITRIYGDHGAEILELLRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRSADLKNEDKKAHSSRTLVADI 660
            +W   PL+E+D  +  K  PSYR LP+++P   C+ER+  E  VLND WVS+P+GSE      +FKH+RKN +E+ LFKCEDERFE+DMVI++    +++L+P+ EEI                  A   T G        R+ F++++R LS + L +I RIYGDHG EILELLR+NP  TIPV+L RL+QKDLEWR +R  LNK W  V    + +S D RS   +  DKK  S+R LV +I
Sbjct:  293 VWYAVPLSEIDFAQCRKCTPSYRALPRDYPKAKCTERSEEEAKVLNDQWVSIPIGSE---ESYSFKHMRKNQYEEALFKCEDERFEIDMVIDSNMCTIRVLEPLAEEIATLKSIETIPRGTLHGDAATGQTQGGASTSIAPRFSFQLEKRHLSTIHLNSIARIYGDHGEEILELLRRNPAGTIPVLLKRLKQKDLEWRKARTELNKHWREVVEKNHTRSFDHRSFYFRQHDKKYLSTRQLVTEI 533
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9176.17239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0X2_ECTSI2.520e-12988.79HDAC_interact domain-containing protein n=1 Tax=Ec... [more]
A0A7S3XWL9_HETAK9.550e-7252.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5KFU2_9PHAE8.830e-6886.13Sin3a_C domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S1UGB0_9STRA6.500e-6446.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835ZD67_9STRA2.040e-6246.27HDAC_interact domain-containing protein n=1 Tax=Tr... [more]
A0A7S3HNY2_9STRA1.520e-6045.90Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2R625_9STRA1.820e-5949.56Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S4IGZ1_9STRA4.500e-5943.39Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2R5Z2_9STRA6.620e-5949.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3MGY4_9STRA1.540e-5845.90Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9176contigS-dermatodea_contig9176:2951..7880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score407.5
Seed ortholog evalue4e-111
Seed eggNOG ortholog2880.D7G0X2
KEGG koko:K11644
KEGG Pathwayko04139,ko04919,ko05016,ko05202,map04139,map04919,map05016,map05202
EggNOG free text desc.histone deacetylation
EggNOG OGsCOG5602@1,KOG4204@2759
Ec32 ortholog descriptionPaired amphipathic helix
Ec32 orthologEc-23_001970.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categoryother localisation
Exons5
Model size687
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9176.17239.1prot_S-dermatodea_contig9176.17239.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9176 2951..7880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925391.2622538-CDS-S-dermatodea_contig9176:2950..30581622925391.2622538-CDS-S-dermatodea_contig9176:2950..3058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 2951..3058 +
1694079901.892503-CDS-S-dermatodea_contig9176:2950..30581694079901.892503-CDS-S-dermatodea_contig9176:2950..3058Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 2951..3058 +
1622925391.2748396-CDS-S-dermatodea_contig9176:3620..37491622925391.2748396-CDS-S-dermatodea_contig9176:3620..3749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 3621..3749 +
1694079901.9063287-CDS-S-dermatodea_contig9176:3620..37491694079901.9063287-CDS-S-dermatodea_contig9176:3620..3749Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 3621..3749 +
1622925391.2851334-CDS-S-dermatodea_contig9176:5105..52161622925391.2851334-CDS-S-dermatodea_contig9176:5105..5216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 5106..5216 +
1694079901.919585-CDS-S-dermatodea_contig9176:5105..52161694079901.919585-CDS-S-dermatodea_contig9176:5105..5216Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 5106..5216 +
1622925391.295847-CDS-S-dermatodea_contig9176:6967..71441622925391.295847-CDS-S-dermatodea_contig9176:6967..7144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 6968..7144 +
1694079901.938398-CDS-S-dermatodea_contig9176:6967..71441694079901.938398-CDS-S-dermatodea_contig9176:6967..7144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 6968..7144 +
1622925391.3097897-CDS-S-dermatodea_contig9176:7718..78801622925391.3097897-CDS-S-dermatodea_contig9176:7718..7880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 7719..7880 +
1694079901.9492931-CDS-S-dermatodea_contig9176:7718..78801694079901.9492931-CDS-S-dermatodea_contig9176:7718..7880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9176 7719..7880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9176.17239.1

>prot_S-dermatodea_contig9176.17239.1 ID=prot_S-dermatodea_contig9176.17239.1|Name=mRNA_S-dermatodea_contig9176.17239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
MWSNTPLNELDLTKSEKGGPSYRHLPKNFPLLSCSERTTLEQSVLNDVWV
SVPVGSEGGGSDVAFKHVRKNAHEDLLFKCEDERFELDMVIEAGSSAMKL
LDPMDEEIKANENTAGARYQFKMDRRVLSPVQLAAITRIYGDHGAEILEL
LRKNPCKTIPVILTRLRQKDLEWRVSRERLNKLWSSVQRGTYYKSLDRRS
ADLKNEDKKAHSSRTLVADILHRCAERV*
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mRNA from alignment at S-dermatodea_contig9176:2951..7880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9176.17239.1 ID=mRNA_S-dermatodea_contig9176.17239.1|Name=mRNA_S-dermatodea_contig9176.17239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4930bp|location=Sequence derived from alignment at S-dermatodea_contig9176:2951..7880+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGAGCAACACGCCTCTGAACGAGCTAGACCTGACGAAGAGCGAGAA
GGGAGGACCCAGCTACCGTCACCTTCCTAAGAACTTCCCTCTCTTGAGCT
GCAGCGAGGTACGTATCATGGAACTCATAGACTATTTATTCATAGGAGGT
ACACAGTATTAATTAAAGAAACAATGCACGTTTTTTTAATAGCGATTTAT
AATTCATTGTTCTGGACAAACATAACTCCGATTTAGATTTGAGGCGGCGA
TACATCTGCGAAGCAAAGATTAGGATTTGTCGCCTCACGGCCGTAGCCTA
AACTACTGTACCTACTATTAATTAATACTACTGTATATTAGTCAGGACCA
AATCAATCAAAATCAATAATACACTAAAATCAATCGCAAATCTCCACGTA
TGTACAGTATTAATAGTACGCTTGTACAAGTATGCACATGTGTAGCATCT
GTATCATATCGTATTTTCTCTTTTTTTTTTCTTCTTTTTTTTCCTCCTCC
GCCGTCGCCGCCCATCCTCTCGCATCTCCTTTACCGTTGGGCCTTGACCT
TGTTCTCCGGCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCTAGCCCCTTCTCCTTCTTCCCCCCCCCCCCCCCCCCCCCCC
CCCCGCGCGCGAACCCTCAGCGCACCACACTTGAGCAGTCCGTGCTGAAC
GACGTGTGGGTTAGCGTGCCGGTGGGTTCCGAGGGCGGCGGCAGCGACGT
GGCATTCAAGCACGTCCGCAAAAACGCCCACGAAGACCTTCTCTTCAAGG
TCAGGGCGGTTGGTTACCTTAGACGGCGTGGCGTTAGGTGTGGCGTTAAG
CGAGGCGTTAGGGCCTAGCGTAGACTAGCGGAAGTGAAGGCGGGGCGGGG
CATAGTTGCGTAGTTTTGTCTTGCCTTGATGATGCTATTGTAGAGCCGGG
ATGTGACACGGCGTGGCGTTAGGCGTAGCGTAAGAGTCTAACGTAGTCTA
TATACGATACCGATAGAGCACAGTTATCGTTAACATACCCATAGGTTTGG
TTGTTTATTGTGCAAGCGAAGAGGAGGGCACGGCAGGGTTGCCTAGTCTT
GTCTATCCTTGTCTTGCCTTGATAATGCTGTTATAGAGCCGTGACGTTGA
CGTTACCCGGCGTGGCGTTAGGCGTGGCGTATGAGCCTAGCGTGTAGGCT
AGCGTAGCGTAGTGCATGCAGCCTACGGCAGCGAAGGGCGTTGGGCTGCA
TGACGTTGTATCGCGTAGGGGGGAAGACTATATACGGAGGTACACTGAAA
TCAAGTAATCAGGACCTATGATAATCTCATGACCATTAATACAATACAAT
ACAATACCCAACTACTGTATTCCGATAATACTAATATGAATACCTATTGA
TACCTATTATGACCATTAATACCCAAACAACAAAATCTCACGAAAAAAAT
AGAAGACACGAGATATGGCCATACACAAGAACATCGACCTTGAAATATCG
ATAATTCCAGCCTATTTTTATTTTTATAGGTTGAGACTTGAGGCAACTTT
GGACCTGTTAAAGTTATCTATGGTAAGTCAGTCCCCAGTAGTATGATAGG
TGTGGTGCCGACAAGAAGTGCTAGAAGTGGTGCCTATTGTCCTCCTTGCT
TTCTTTATTCTACCATTACCTTGTACTGGTACACGGTTGGGTGCACACGA
ATCCCCTGTCAATCAACATCATACATACAAAACAGAGTAAAAACCCTTAA
CATTGATCCTCCGTCCTGTAGTCTCTCACCCCCTCCACCCCTTAAAAAAT
AACACGGCTTCGAAGGCATCGGGCGAGGGTTGGGGTCCCACCTTTCAAAC
AGAGAAGATGGTTCAAGCTACACCTAAGGAGTCTTCCGTTGCGCATGACC
CCCCCCCCCCCCAAATCTAGAACGATTTAAAGAACAAGGAGCGAGCGCCC
CCTTGAAAAAATAAAGGTTTCATAAACATAGAGCGAGCGTTGGGGTCCCG
CCTTTTTTAGAGGAACGATGGTCCAAGCTACACCCCCCCCCCCACACACA
CACATGCACCAATTACTGTACGTGAAAGCCTTTGAATAGATTAAACTGAC
CACCTCCAACCCCTCCTGGTTCGCGCGCACTGGCATGTTGTTACCGTCCA
ACCAGTGCGAAGATGAGCGGTTCGAGCTGGATATGGTTATTGAGGCGGGT
AGCAGCGCGATGAAGCTGCTCGACCCCATGGACGAGGAAATCAAGGCCAA
CGAAAACACCGCGGGGGTAAGGAGAGGAGAGGAGAGGAGACGGGAATATG
TGTAGAAAAGGTGTAGATTGTTAATACTGTACACGTGTAACCCGTGTACT
TTACTATTAAGTGTATGTTGTAGTGTACTATATGTTAATACTGTACACAT
GTGTAACCCGTGTGCTTTAGTATTTATAGTCTACAGCAGTGTACACTGAG
ATTAATATCAAAGGCAGAGAGTGTACTTACTATACATGTGTTCACCATTC
TCTAATTGCACACGAATTGTCACCAGTTTCAAAATACACTTGTAGGCTGT
GTACCTCATTGTATACCTCTATCATACCCCGAGTTACACTTGCACTACAC
TACGATCGCCGCCTTTGGAAGACACATACTTTTTAGCTTTCAGCGTTCGG
GTTTGACTTTAGGGTCAGGGTTGGAGTTGGAGCTTAATTGATCTTGTTGG
CGTTGGCGTTTGAGGGTGCCTTATTCATACCTTGTTTCGGTTCGGCCTGG
GTTAGCCTTGGGGGTTGCAGTTGGGCTCGTAGTTTTTTTAGCGTTAGCGT
TAGCGTTGGCGTTTAGGTTATAGGGTTAGGGTTAGGGTTCGGGTTTATGG
TTTGGGTTGTCGTTTGCCTTTGGGTTTGGTTTGGCGTTAGCGTTGGGGGT
TGCGGTTGGGCTCACGTTTGGTATTTAGCGTTATAGCTTTAGCGTTGGCA
CTTACGCTAGGGTTAGGGTTAGGGTTCGGGTTCGTTTTTTTTATGGTTTG
GGGTTGGCGTTTGCGATTGGGTTTGGTTTGGCGTTAGCGTTGGCGGTTGG
GCTCACGTTTGGTATTTAGCGTTAGCTTTAGTTGGCACTTACGCTAGGAT
TAGGGTTAGGGTTCGGGTTCGTTTTTTTTATGGTTTGGGTTGGCGTTTGC
CTTTGGGTTTGGTTTGGCGTTAGCGTTGGCGGTTGCGGTTGGGCTCACGT
TTGGTATTTAGCGTTAGCGTTTGCGCTTCCGTTTCCGTTTCCGTTGGGGT
TTGCAGTTTGCGTGTACGTTTTGCGTTTGTGGTTCAGTTTGCGCTAGCGG
TAGGGTTTGCGGTGGCGTCGGCGTTTGCCTGTGGTCTCGCGTTCGGGTTT
GCGGTGGCGTTTGCGTTAGGGTTGGTGTTGGGGGCTTATGGTTAGCGTTT
GGGTTTGGGTTTGGGTTATAGTGATTTAGCGTTGGCGTTTGCCTGTCGGC
TCGCTTTTTGGTTGGCGTTAAAGTTTGCGTGTAGCGTTGATTCAGCGCTG
GCGTTTGCATTTTGCGTTTGGCGTTGCGATTGCTTTAACACTACAGTAGC
GTTGGCGTTAAGGTGAGAGATGAGAAGTGGTCTGAGAAGGCGATAATTCA
TGTAGACAGGAATGGCGGGATTTCGTTTGTTTGTGTTGACGTTTTTGTTT
TTGCGGTATACCGTTTGTGGGTAGGTCGTTGAGCTCGCGTTTTGGGTTGG
TGTTGGCGTTAGCTTTAGCGTTGACGTTGAAGACGTGGGGGATAATATGT
GGCTGAGGAGGCGATGATCGACGTGGACAGGAATAGTATTATGTAGGAGC
CACTTGTTGTTGGGCCATCTTTGGCAAAGCAGGAACGAACGAACGAACGA
ACGAACAAACGATTGACCCATCCGCCGTCGATCGACCCCCGGGTGACGAT
GCTTCGTCCTCTTCCCGAGCACGCGTCGTGAATGGCCTAGCAGCTAAGAC
ATACCAGTACATAACTTGAGCCCCCCCCCCCCCTCCCCTTTGCGCACTTG
TATCCTCATGTTGCCAGGCTCGCTACCAGTTCAAGATGGACAGGCGCGTT
CTCAGCCCTGTGCAGCTCGCGGCCATCACCCGCATCTACGGCGACCACGG
CGCGGAGATCCTGGAGTTGCTTCGAAAGAATCCTTGCAAGACCATCCCGG
TCATCCTAACTCGGCTTCGGCAAAAGGACCTCGAGTGGAGAGTGGTGAGA
TATTTTGCCCCTATTGTTTTTTTTTTTGTTTTTTTGTTTTTTTTTGTCAA
AACACATAGTAGAGCGGTCGTCGATGTTTACGTTTTTTTTTCTTTAGAAA
GAAACTAAACGCAAGAAAGTGTATAATCCATAGCGCTCTTTGGGGCAGGA
CCCGGGTGGACTTGGTTGTACGCAAAATTGAGTTTGGTGTCAACTCATCG
GCCACCTGAAATAAATTATCCTTACTACTTCGAAGTATTAATATTAGTAG
TAGAACATTTTTCCGGCGACTTACTCCCCAAGTGCAATATACTAATATAC
TTATACTTGGCTCAGCAAAACGTACCCCATATGGGCGAAACCAAACGCAT
CACATGCTAGAGGACACCTGCCTAACATTTGATTGTTGGAAACGCCCTTA
ACGTGAGAGCAACGATTGACTTATGAGCGGTGCTCCGCATGAGCAGATTA
TAGCCCGAGTGTAAAAAACGTTATAAGGGGTATATATCTTGATGGCAACG
GCTGCATGATGGAACTCCCCTCCCCCTCCCCCTTATCTTGTCGCACGCGT
CGCGCTCACACACGACAGTCCCGCGAGCGTCTGAACAAGCTGTGGTCGAG
CGTGCAGCGGGGCACCTACTACAAGTCCCTCGACCGACGGTCTGCTGACC
TAAAAAACGAGGATAAGAAGGCTCACTCCTCCAGGACGCTTGTTGCCGAT
ATCTTGCACAGGTGCGCTGAGAGAGTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9176:2951..7880+

>mRNA_S-dermatodea_contig9176.17239.1 ID=mRNA_S-dermatodea_contig9176.17239.1|Name=mRNA_S-dermatodea_contig9176.17239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig9176:2951..7880+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGAGCAACACGCCTCTGAACGAGCTAGACCTGACGAAGAGCGAGAA
GGGAGGACCCAGCTACCGTCACCTTCCTAAGAACTTCCCTCTCTTGAGCT
GCAGCGAGATGTGGAGCAACACGCCTCTGAACGAGCTAGACCTGACGAAG
AGCGAGAAGGGAGGACCCAGCTACCGTCACCTTCCTAAGAACTTCCCTCT
CTTGAGCTGCAGCGAGCGCACCACACTTGAGCAGTCCGTGCTGAACGACG
TGTGGGTTAGCGTGCCGGTGGGTTCCGAGGGCGGCGGCAGCGACGTGGCA
TTCAAGCACGTCCGCAAAAACGCCCACGAAGACCTTCTCTTCAAGCGCAC
CACACTTGAGCAGTCCGTGCTGAACGACGTGTGGGTTAGCGTGCCGGTGG
GTTCCGAGGGCGGCGGCAGCGACGTGGCATTCAAGCACGTCCGCAAAAAC
GCCCACGAAGACCTTCTCTTCAAGTGCGAAGATGAGCGGTTCGAGCTGGA
TATGGTTATTGAGGCGGGTAGCAGCGCGATGAAGCTGCTCGACCCCATGG
ACGAGGAAATCAAGGCCAACGAAAACACCGCGGGGTGCGAAGATGAGCGG
TTCGAGCTGGATATGGTTATTGAGGCGGGTAGCAGCGCGATGAAGCTGCT
CGACCCCATGGACGAGGAAATCAAGGCCAACGAAAACACCGCGGGGGCTC
GCTACCAGTTCAAGATGGACAGGCGCGTTCTCAGCCCTGTGCAGCTCGCG
GCCATCACCCGCATCTACGGCGACCACGGCGCGGAGATCCTGGAGTTGCT
TCGAAAGAATCCTTGCAAGACCATCCCGGTCATCCTAACTCGGCTTCGGC
AAAAGGACCTCGAGTGGAGAGTGGCTCGCTACCAGTTCAAGATGGACAGG
CGCGTTCTCAGCCCTGTGCAGCTCGCGGCCATCACCCGCATCTACGGCGA
CCACGGCGCGGAGATCCTGGAGTTGCTTCGAAAGAATCCTTGCAAGACCA
TCCCGGTCATCCTAACTCGGCTTCGGCAAAAGGACCTCGAGTGGAGAGTG
TCCCGCGAGCGTCTGAACAAGCTGTGGTCGAGCGTGCAGCGGGGCACCTA
CTACAAGTCCCTCGACCGACGGTCTGCTGACCTAAAAAACGAGGATAAGA
AGGCTCACTCCTCCAGGACGCTTGTTGCCGATATCTTGCACAGGTGCGCT
GAGAGAGTCTGATCCCGCGAGCGTCTGAACAAGCTGTGGTCGAGCGTGCA
GCGGGGCACCTACTACAAGTCCCTCGACCGACGGTCTGCTGACCTAAAAA
ACGAGGATAAGAAGGCTCACTCCTCCAGGACGCTTGTTGCCGATATCTTG
CACAGGTGCGCTGAGAGAGTCTGA
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