mRNA_S-dermatodea_contig9170.17233.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9170.17233.1
Unique NamemRNA_S-dermatodea_contig9170.17233.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: D7FV43_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV43_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 9.760e-55
Identity = 83/96 (86.46%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGVTV+  +EGDK+TYPK GD+VTMDYTGTL DGTVFDSSIRKGRRF  KIGVG+VIQGWDEGVPQMSLGEKAIL C+SDYAYGPEGAGGVIPPNA
Sbjct:    1 MGVTVETTKEGDKQTYPKPGDSVTMDYTGTLEDGTVFDSSIRKGRRFNCKIGVGQVIQGWDEGVPQMSLGEKAILKCTSDYAYGPEGAGGVIPPNA 96
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A835YRR7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRR7_9STRA)

HSP 1 Score: 142 bits (358), Expect = 4.000e-42
Identity = 71/97 (73.20%), Postives = 80/97 (82.47%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLL-DGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGVT ++LR GD++T+PK GD +TM YTGTL  +G VFDSSIRKGR F   IGVGRVI+GWDEGV QMSLGEKAILH +SDY YG  GAGGVIPPNA
Sbjct:    1 MGVTKEVLRTGDEQTFPKRGDELTMHYTGTLASNGQVFDSSIRKGRPFKFTIGVGRVIKGWDEGVAQMSLGEKAILHITSDYGYGAAGAGGVIPPNA 97
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A167LHP4_CALVF (Peptidylprolyl isomerase n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167LHP4_CALVF)

HSP 1 Score: 139 bits (349), Expect = 2.650e-40
Identity = 68/96 (70.83%), Postives = 75/96 (78.12%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGV VQ L  GD K +PK G +VTM Y GTL DGT FDSS  +G  FVTKIGVGRVI+GWDEGVPQ+SLG+KA L CS D+AYGP G GGVIPPNA
Sbjct:   36 MGVQVQTLAPGDGKNFPKPGASVTMHYVGTLADGTKFDSSRDRGDPFVTKIGVGRVIKGWDEGVPQLSLGQKANLICSPDFAYGPRGIGGVIPPNA 131
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: FKBP1_RHIO9 (FK506-binding protein 1 n=1 Tax=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) TaxID=246409 RepID=FKBP1_RHIO9)

HSP 1 Score: 137 bits (344), Expect = 5.280e-40
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGVTV+ ++ GD K +PK GDTVTM YTGTL +G+VFDSS+R+   FVT+IGVGRVI+GWDEGV Q+SLG+KA L C+ DYAYGP G   VIPPNA
Sbjct:    1 MGVTVETIQPGDGKNFPKKGDTVTMHYTGTLQNGSVFDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPPVIPPNA 96
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: M5GAQ6_DACPD (Peptidylprolyl isomerase n=1 Tax=Dacryopinax primogenitus (strain DJM 731) TaxID=1858805 RepID=M5GAQ6_DACPD)

HSP 1 Score: 137 bits (346), Expect = 7.570e-40
Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGV V+ + +GD K +PK G TVTM Y GTL +GT FDSS  +G+ FVT+IG+GRVI+GWDEGVPQ+SLG+KAIL CS+DYAYGP G  G IPPNA
Sbjct:   36 MGVEVKNIADGDGKNFPKKGGTVTMHYVGTLANGTKFDSSRDRGKPFVTEIGIGRVIKGWDEGVPQLSLGQKAILVCSADYAYGPRGVPGAIPPNA 131
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A813CI54_9DINO (Peptidylprolyl isomerase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A813CI54_9DINO)

HSP 1 Score: 135 bits (339), Expect = 1.020e-38
Identity = 66/95 (69.47%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    4 GVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            GVT ++L+EGD K YPK GDTVTM YTGTL +G  FDSS  +G+ F T+IGVG+VI+GWDEGVP MSLGEKAIL  +SDY YG  GAG VIPPNA
Sbjct:   42 GVTKEVLQEGDGKNYPKKGDTVTMHYTGTLSNGKKFDSSRDRGQPFRTQIGVGQVIRGWDEGVPTMSLGEKAILRMTSDYGYGARGAGRVIPPNA 136
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A7S4UG99_9DINO (Peptidylprolyl isomerase n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UG99_9DINO)

HSP 1 Score: 133 bits (335), Expect = 1.280e-38
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLL-DGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGV  Q+++ GD   +PK GDTVTM YTGTL  DG  FDSS+ +G+ F TKIGVG+VI+GWDEGVPQMSLGEKAIL  +SD+ YG  GAGGVIPP+A
Sbjct:    1 MGVEKQIIKAGDNANFPKEGDTVTMHYTGTLTKDGKKFDSSVDRGQPFKTKIGVGQVIRGWDEGVPQMSLGEKAILRMTSDFGYGAAGAGGVIPPSA 97
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A7S2P014_9DINO (Peptidylprolyl isomerase n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2P014_9DINO)

HSP 1 Score: 134 bits (338), Expect = 1.320e-38
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLD-GTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGV  ++++EGD  T+PK GDTVTM YTGTL D G  FDSS+ +G+ F TKIGVG+VI+GWDEGVP MSLGEKA+L  +SD+ YG  GAGGVIPPNA
Sbjct:   37 MGVEKEVVKEGDGATFPKKGDTVTMHYTGTLTDNGKKFDSSVDRGQPFQTKIGVGQVIKGWDEGVPTMSLGEKAVLKMTSDFGYGARGAGGVIPPNA 133
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A1Y2C4G6_9FUNG (Peptidylprolyl isomerase n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2C4G6_9FUNG)

HSP 1 Score: 133 bits (335), Expect = 2.200e-38
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGVT ++L+ GD K +PK GDTVTM YTGTL +G+ FDSS+ +G+ FVT IGVGRVI+GWDEGVPQMSLGEKAIL  S DYAYG  G   VIPP +
Sbjct:   20 MGVTKEVLKAGDGKNFPKKGDTVTMHYTGTLNNGSKFDSSVDRGQPFVTAIGVGRVIKGWDEGVPQMSLGEKAILRISYDYAYGERGFPPVIPPKS 115
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BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Match: A0A7S0FCY0_9DINO (Peptidylprolyl isomerase n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FCY0_9DINO)

HSP 1 Score: 134 bits (336), Expect = 2.300e-38
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 1 
Query:    1 MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLL-DGTVFDSSIRKGRRFVTKIGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA 288
            MGV  ++L+EGD+  +PK GDTVTM YTGTL  +G  FDSS+ +G+ F T+IGVG VIQGWDEGVP MS+GEKAIL  +SDY YG  GAGGVIPPNA
Sbjct:   32 MGVEKEVLKEGDRTNFPKKGDTVTMHYTGTLTSNGKKFDSSVDRGQPFRTRIGVGEVIQGWDEGVPTMSVGEKAILKMTSDYGYGKSGAGGVIPPNA 128
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9170.17233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV43_ECTSI9.760e-5586.46Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YRR7_9STRA4.000e-4273.20Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A167LHP4_CALVF2.650e-4070.83Peptidylprolyl isomerase n=1 Tax=Calocera viscosa ... [more]
FKBP1_RHIO95.280e-4067.71FK506-binding protein 1 n=1 Tax=Rhizopus delemar (... [more]
M5GAQ6_DACPD7.570e-4066.67Peptidylprolyl isomerase n=1 Tax=Dacryopinax primo... [more]
A0A813CI54_9DINO1.020e-3869.47Peptidylprolyl isomerase n=3 Tax=Symbiodinium TaxI... [more]
A0A7S4UG99_9DINO1.280e-3867.01Peptidylprolyl isomerase n=1 Tax=Alexandrium monil... [more]
A0A7S2P014_9DINO1.320e-3867.01Peptidylprolyl isomerase n=1 Tax=Brandtodinium nut... [more]
A0A1Y2C4G6_9FUNG2.200e-3867.71Peptidylprolyl isomerase n=1 Tax=Rhizoclosmatium g... [more]
A0A7S0FCY0_9DINO2.300e-3867.01Peptidylprolyl isomerase n=1 Tax=Pyrodinium bahame... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9170contigS-dermatodea_contig9170:6373..8389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.5
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog2880.D7FV43
KEGG koko:K09568
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-12_005100.1
Exons3
Model size288
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9170.17233.1prot_S-dermatodea_contig9170.17233.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9170 6373..8389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925390.9321651-CDS-S-dermatodea_contig9170:6372..64771622925390.9321651-CDS-S-dermatodea_contig9170:6372..6477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 6373..6477 +
1694079901.699326-CDS-S-dermatodea_contig9170:6372..64771694079901.699326-CDS-S-dermatodea_contig9170:6372..6477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 6373..6477 +
1622925390.9491115-CDS-S-dermatodea_contig9170:6852..69211622925390.9491115-CDS-S-dermatodea_contig9170:6852..6921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 6853..6921 +
1694079901.722886-CDS-S-dermatodea_contig9170:6852..69211694079901.722886-CDS-S-dermatodea_contig9170:6852..6921Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 6853..6921 +
1622925390.9635124-CDS-S-dermatodea_contig9170:8275..83891622925390.9635124-CDS-S-dermatodea_contig9170:8275..8389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 8276..8389 +
1694079901.7359655-CDS-S-dermatodea_contig9170:8275..83891694079901.7359655-CDS-S-dermatodea_contig9170:8275..8389Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9170 8276..8389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9170.17233.1

>prot_S-dermatodea_contig9170.17233.1 ID=prot_S-dermatodea_contig9170.17233.1|Name=mRNA_S-dermatodea_contig9170.17233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MGVTVQMLREGDKKTYPKAGDTVTMDYTGTLLDGTVFDSSIRKGRRFVTK
IGVGRVIQGWDEGVPQMSLGEKAILHCSSDYAYGPEGAGGVIPPNA
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mRNA from alignment at S-dermatodea_contig9170:6373..8389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9170.17233.1 ID=mRNA_S-dermatodea_contig9170.17233.1|Name=mRNA_S-dermatodea_contig9170.17233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2017bp|location=Sequence derived from alignment at S-dermatodea_contig9170:6373..8389+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGTCACGGTGCAGATGCTGAGAGAAGGGGACAAAAAGACGTACCC
GAAGGCAGGAGACACGGTCACGATGGACTACACGGGGACGCTCCTCGACG
GCACAGTGAGTGTACACACACTATGCGAGTCTATTAATAGTGTATCTTGT
GTTTGTCTGCAGTCATATTTTACGACGTATCATATCATATATCATATGGT
GCGTATGAAAATGAATTGTACTCAACGCCTGCACGTATCATAGTGCCAAG
ATTACCCCGATTCTGATCGTATATGTTTCAGCTTACAGCAGTATTTAGCC
ACCGTTTTTTTTTGTCACGTCCACCGCCTTAGATATCATACGACTGGGGA
GACATAGCATTCGTCGGCCGGACGCGCCACGTGAGCTGCGATGCCGACCA
CCCCGCAACCGTCTGGTCCACCTGACGCTGACGCACTTCTCCCATTCCAC
GTGTCCGCCGTCTGCGTGTCGTCGAGGCAGGTGTTCGATAGCTCAATCAG
AAAGGGACGGCGATTCGTGACAAAAATCGGCGTCGGGCGCGTAATTCAGG
TGTGTTTGCTAACTACTGTATATATTATATAATAGACCATACTGTAGTAA
GAAAAAGAAGAGCCGAACCCACCCTTGGCGGGTTTTTCCTCGACTTCGAA
GGTTGGCAGAGCCCCCCCCCGGCCGGCCGGCCGCGCGCGCGCTTGCTTAG
CGAGTTTCATGCTGACGTTGCGAGAGCGCAGAGGACAGCCGTGGCATTGC
CAAGATCGTGTGGCCAACTTGTGAGTATCACTTCTCCGCGTTTGACCGCC
AAGTCTGCTGCGGATCGACCACAGGCGGAGACGGGACATTACGACGTACC
CTGTTGGTCGGCAGACTCAAGATTGGATTGTAACACAAAGACCTGTATAC
TCGGTGCTCTGTACACATATGCGGACTGCGTCCTACCAGTATGTCCTTGT
CGTGGTACGAAAAACGCTCGGCCTGCGTGTTTTATCCTCTATCGCCGACC
AGAAGACTGCGGGGGTGGTTACTGTTTCACAACAGACCGTATGATATGGA
TAGCCCGCGATTGTTCGTAAACGCGAACGTGTGCACGTGTGCTGCGTGTG
GGGGTCCAATAGTCCATATTTATAAATCAGCGTCAGAGCAAATAAACTAT
GTATGATAGGACTACAGAGTGTACTTGTGTACTTGTACTCCGTCCAGAGC
AGAAGACGCTTCAGAATTGTGGTGCTAATTTAGATACTTGTAGAGTCTGT
CCCGGTTTATGTTCCGCCGCCGCGTGGCCTTACTCTTTATAACTATAAAT
ACGTGTGTAAATCAAAAATCAATCAAAATCAGTACACAGGCACACACACA
CACACACACAAGAGATGACACACCGTATCCTATAATAATATCGGAGTAAT
AATAAAAACTACAAGCAAGTTTCCCCTAAACCAGTGTGCTCGTGAGTCAG
GGATCAGTATCATACATGGGAACTAGATTTTGTTTTTTATGTAAAAGCTT
CCCCTAAACCAGTGTGCTCGTGAGTTAGGGATCAGTACATGGGAACTACT
TGTAGATTTTGTTTTTTATATAAGTTTCCCCTGAACCAGTGTGCTCGTGA
GTTAGGGATCAGTACATGGGAACTCCAGCAGATTTTGTTTTTTATTAAAA
AACAAAAAAGTACAAGTACAGCAGCAGTGTAACCTAACCTGTTTTTTGTT
CCTTTCTCTTATTAATTTATAAATAAATTTATAAATTAAATGGTACATAA
TAGTCACCGTTTTGTTGTCCCTGTTTCGTTTCGTTTTATTTTATTTTATT
GTTTTGCCACCTTTGGCCTGGCCTGACCTCCTCCTCTCCGTCTTGTCTGT
CTCTATTCTTTCCTCCCTTTTCAAATTTGTTGTCGTGTTGTCCCGGTATG
CAGGGGTGGGACGAGGGCGTCCCGCAGATGTCGCTTGGGGAGAAGGCCAT
TCTCCACTGCAGTTCTGACTACGCGTACGGCCCTGAGGGCGCTGGTGGAG
TTATCCCGCCGAACGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9170:6373..8389+

>mRNA_S-dermatodea_contig9170.17233.1 ID=mRNA_S-dermatodea_contig9170.17233.1|Name=mRNA_S-dermatodea_contig9170.17233.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig9170:6373..8389+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGAGTCACGGTGCAGATGCTGAGAGAAGGGGACAAAAAGACGTACCC
GAAGGCAGGAGACACGGTCACGATGGACTACACGGGGACGCTCCTCGACG
GCACAATGGGAGTCACGGTGCAGATGCTGAGAGAAGGGGACAAAAAGACG
TACCCGAAGGCAGGAGACACGGTCACGATGGACTACACGGGGACGCTCCT
CGACGGCACAGTGTTCGATAGCTCAATCAGAAAGGGACGGCGATTCGTGA
CAAAAATCGGCGTCGGGCGCGTAATTCAGGTGTTCGATAGCTCAATCAGA
AAGGGACGGCGATTCGTGACAAAAATCGGCGTCGGGCGCGTAATTCAGGG
GTGGGACGAGGGCGTCCCGCAGATGTCGCTTGGGGAGAAGGCCATTCTCC
ACTGCAGTTCTGACTACGCGTACGGCCCTGAGGGCGCTGGTGGAGTTATC
CCGCCGAACGCCGGGTGGGACGAGGGCGTCCCGCAGATGTCGCTTGGGGA
GAAGGCCATTCTCCACTGCAGTTCTGACTACGCGTACGGCCCTGAGGGCG
CTGGTGGAGTTATCCCGCCGAACGCC
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