mRNA_S-dermatodea_contig9132.17207.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9132.17207.1
Unique NamemRNA_S-dermatodea_contig9132.17207.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: D7FTU9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 1.930e-17
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            SL  S  G+ RLVYL+LARN++SSLLGIE L SL T + R NR+ S  EVGRL+CL  LR++D+RLNPVM
Sbjct:   36 SLRGSLGGLRRLVYLNLARNNLSSLLGIEHLVSLGTLVLRENRVESIDEVGRLSCLGDLRDLDIRLNPVM 105
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: A0A6H5JQB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQB1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 3.660e-17
Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            SL  S  G+ RLVYL+LARN +SSLLGIE L SL T + R NR+ S  EVGRL+CL  LRN+DLR NPVM
Sbjct:  194 SLRGSLGGLRRLVYLNLARNILSSLLGIEHLVSLGTLVLRENRVESIDEVGRLSCLGDLRNLDLRRNPVM 263
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: A0A8J6GNZ5_MICOH (Leucine-rich repeat-containing protein 36 n=5 Tax=Arvicolinae TaxID=39087 RepID=A0A8J6GNZ5_MICOH)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP+L+ +DLRLNPV+
Sbjct:   17 SIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPYLKELDLRLNPVV 86
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: UPI000333B328 (leucine-rich repeat-containing protein 36 n=1 Tax=Echinops telfairi TaxID=9371 RepID=UPI000333B328)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP LR +DLRLNPV+
Sbjct:   24 SIGDAFRSFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLRELDLRLNPVV 93
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: M3Y4A7_MUSPF (Uncharacterized protein n=27 Tax=Laurasiatheria TaxID=314145 RepID=M3Y4A7_MUSPF)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 36/70 (51.43%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP LR +DLRLNPV+
Sbjct:   41 SIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLRELDLRLNPVV 110
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BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: UPI001BB15AB2 (leucine-rich repeat-containing protein 36 isoform X2 n=4 Tax=Arvicolinae TaxID=39087 RepID=UPI001BB15AB2)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP+L+ +DLRLNPV+
Sbjct:   41 SIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPYLKELDLRLNPVV 110
[Close]
BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: UPI00186B0A50 (leucine-rich repeat-containing protein 36 n=1 Tax=Trichosurus vulpecula TaxID=9337 RepID=UPI00186B0A50)

HSP 1 Score: 60.1 bits (144), Expect = 1.220e-8
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+G++F+    L  L L+RN ISSL GIE L SL       N I S  EV RL  LP L+ +DLRLNPV+
Sbjct:   41 SIGETFKNFKNLRSLDLSRNLISSLQGIEYLSSLQDLNLYYNNIPSLAEVSRLQALPCLKELDLRLNPVV 110
[Close]
BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: UPI002020C65E (leucine-rich repeat-containing protein 36 isoform X1 n=6 Tax=Arvicolinae TaxID=39087 RepID=UPI002020C65E)

HSP 1 Score: 60.1 bits (144), Expect = 1.230e-8
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP+L+ +DLRLNPV+
Sbjct:   41 SIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPYLKELDLRLNPVV 110
[Close]
BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: UPI001E261504 (leucine-rich repeat-containing protein 36 isoform X10 n=2 Tax=Felinae TaxID=338152 RepID=UPI001E261504)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-8
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:    2 SLGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVM 211
            S+GD+FR    L  L L+RN I+SL GI+ L SL       N I S  EV RL  LP L+ +DLRLNPV+
Sbjct:   41 SIGDAFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQSLPFLKELDLRLNPVV 110
[Close]
BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Match: A0A8B7PTX4_HIPAR (centrosomal protein of 72 kDa isoform X1 n=4 Tax=Hipposideros armiger TaxID=186990 RepID=A0A8B7PTX4_HIPAR)

HSP 1 Score: 59.7 bits (143), Expect = 1.660e-8
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 2 
Query:    5 LGDSFRGVGRLVYLSLARNSISSLLGIEQLPSLATAIFRANRIASTKEVGRLACLPHLRNVDLRLNPVMNHRP 223
            LG+S   +  L  L L+RNS+ SL GI+ L SL       N ++S  EV RL  LP LR+VDLRLNPV+ ++P
Sbjct:   46 LGNSLMNLTGLKSLDLSRNSLVSLEGIQHLASLERLSLYHNCVSSLAEVLRLRSLPELRDVDLRLNPVVKNQP 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9132.17207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTU9_ECTSI1.930e-1762.86Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JQB1_9PHAE3.660e-1764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J6GNZ5_MICOH1.220e-850.00Leucine-rich repeat-containing protein 36 n=5 Tax=... [more]
UPI000333B3281.220e-851.43leucine-rich repeat-containing protein 36 n=1 Tax=... [more]
M3Y4A7_MUSPF1.220e-851.43Uncharacterized protein n=27 Tax=Laurasiatheria Ta... [more]
UPI001BB15AB21.220e-850.00leucine-rich repeat-containing protein 36 isoform ... [more]
UPI00186B0A501.220e-850.00leucine-rich repeat-containing protein 36 n=1 Tax=... [more]
UPI002020C65E1.230e-850.00leucine-rich repeat-containing protein 36 isoform ... [more]
UPI001E2615041.650e-850.00leucine-rich repeat-containing protein 36 isoform ... [more]
A0A8B7PTX4_HIPAR1.660e-847.95centrosomal protein of 72 kDa isoform X1 n=4 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9132contigS-dermatodea_contig9132:899..2316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925388.9253163-CDS-S-dermatodea_contig9132:898..9771622925388.9253163-CDS-S-dermatodea_contig9132:898..977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 899..977 +
1694079900.3157606-CDS-S-dermatodea_contig9132:898..9771694079900.3157606-CDS-S-dermatodea_contig9132:898..977Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 899..977 +
1622925388.9757988-CDS-S-dermatodea_contig9132:2140..23161622925388.9757988-CDS-S-dermatodea_contig9132:2140..2316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 2141..2316 +
1694079900.324076-CDS-S-dermatodea_contig9132:2140..23161694079900.324076-CDS-S-dermatodea_contig9132:2140..2316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9132 2141..2316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9132.17207.1prot_S-dermatodea_contig9132.17207.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9132 899..2316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9132.17207.1

>prot_S-dermatodea_contig9132.17207.1 ID=prot_S-dermatodea_contig9132.17207.1|Name=mRNA_S-dermatodea_contig9132.17207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
EPGRLVPRSGAASVPQPRAEQHFFFAGYRATPVPRDSHLSSKSHREHQRG
RPLGLSPPPPQRRPAAQPGHESSPAARRRRLRQG*
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mRNA from alignment at S-dermatodea_contig9132:899..2316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9132.17207.1 ID=mRNA_S-dermatodea_contig9132.17207.1|Name=mRNA_S-dermatodea_contig9132.17207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1418bp|location=Sequence derived from alignment at S-dermatodea_contig9132:899..2316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCCTGGGAGACTCGTTCCGCGGAGTGGGGCGGCTAGTGTACCTCAGCC
TCGCGCGGAACAGCATTTCTTCTTTGCTGGCAAGGGCAATCATTAGACGA
TCGCGGATTTTTTGTGCTAATATTATGATTTATTATTGGTATTATTGTCA
CACATACTGGTTGGAGACGGCAGCTGTCGCGAGTTGAGCTGTCGGCGCGG
GCGTATGACCGACGGTGGATAGAGCGGTCGGTCGGTCAGGCGGTTAGCGG
TAAACAAAAACAAATTCCAGGGTACTCTTTTTTTTGCTGAGCGTTTCTTT
GAATTAGAATAGATGAGAATAGGGAAAAGACGGTGCAAGCAAGATTGACT
TGTGGGGGAGCGGCGGTGCCGATTGCCCTGAGCGCTGAGCGGAATGAGGT
TTGGTTTAATCCGGGATTTTTCACGACCCCCACGCCCAACTTCCGAACGC
GAACTCGATACCGCCGACATAAAAAAGGATTAACCTTGGAACGCTTCAAC
GCCCCCCCCTGAAACATTTTAACTGTATGTATTAATAGCTGAAACCAGCA
AACCTCGGTCTAGCGCGGCCCTTGCACCACGCACCACGCAACCAAGCACC
CGCATGGCGATAACCCCACCCGTCCCACCACTGAAGAAAAATTTAAAAGA
AAACACAGAGCGGGTGTTGGGGTTCATCTTTTTGTTTTGAACTGACGAAA
TATGGTCCGGGCCAACGCCCCCCCCGGGTTAAACTGAGACCTAAAGCCCC
CTTTCCTTAAAGGCTCGAGGTGAGGGTGGTCGAGGTAGGGTTGGCTCTTG
TGGCGTAGAGCTGTAAATTTGACACTTCACAGGGTCAGGGGGAGTTCACG
CATTTTGTCGTCTGAGTTCAGAGACCTCGGTCGAAGAGTCTCTTTTCTCC
CCGAAGGGGTCGAACGCATCACATGCTATAAGATACCTGCTGAACGATGG
GTTAATAGAAAGCCCTAGATCATCCTTTGCCTTACTGAATGTGCAACATT
CGGTCGCCCGGTATCTCTAGCTAACCCGTTGCATATCGGTTTGGGGTCGC
AAACGCGAGGATGATTACGAGCAGCTGGTATCACCCTTGTGAAACGCAGC
CTTGCCGGCAAAAACCCGGCATATCGCTCCGTCCCGGCATTGTTGGGACG
CGTGGTCTAATTTCGTCTAGATTCGCCATGCGTTTAACCTAAAGACCCCC
CCCCCCCCCTTCCTTCTCCTCCACCGACGTATCCGCTGGCAGGGTATCGA
GCAACTCCCGTCCCTCGCGACAGCCATCTTTCGAGCAAATCGCATCGCGA
GCACCAAAGAGGTCGGCCGCTTGGCCTGTCTCCCCCACCTCCGCAACGTA
GACCTGCGGCTCAACCCGGTCATGAATCATCGCCCGCCGCACGACGCCGA
CGCCTGCGGCAAGGTTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig9132:899..2316+

>mRNA_S-dermatodea_contig9132.17207.1 ID=mRNA_S-dermatodea_contig9132.17207.1|Name=mRNA_S-dermatodea_contig9132.17207.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig9132:899..2316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCCTGGGAGACTCGTTCCGCGGAGTGGGGCGGCTAGTGTACCTCAGCC
TCGCGCGGAACAGCATTTCTTCTTTGCTGGAGCCTGGGAGACTCGTTCCG
CGGAGTGGGGCGGCTAGTGTACCTCAGCCTCGCGCGGAACAGCATTTCTT
CTTTGCTGGGTATCGAGCAACTCCCGTCCCTCGCGACAGCCATCTTTCGA
GCAAATCGCATCGCGAGCACCAAAGAGGTCGGCCGCTTGGCCTGTCTCCC
CCACCTCCGCAACGTAGACCTGCGGCTCAACCCGGTCATGAATCATCGCC
CGCCGCACGACGCCGACGCCTGCGGCAAGGTTAGGGTATCGAGCAACTCC
CGTCCCTCGCGACAGCCATCTTTCGAGCAAATCGCATCGCGAGCACCAAA
GAGGTCGGCCGCTTGGCCTGTCTCCCCCACCTCCGCAACGTAGACCTGCG
GCTCAACCCGGTCATGAATCATCGCCCGCCGCACGACGCCGACGCCTGCG
GCAAGGTTAG
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