mRNA_S-dermatodea_contig12807.1718.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12807.1718.1
Unique NamemRNA_S-dermatodea_contig12807.1718.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A6H5L470_9PHAE (Importin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L470_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.930e-34
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 
Query:   13 PPLLLCLQERLGSTDVWQRESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            P LL  L+ERL S DVWQRESAMLSLGAASEGCL+GLGPHLPALFSFL+QQQ AETPQLRSIACWVLGRFMR+
Sbjct:  398 PALLPALEERLASADVWQRESAMLSLGAASEGCLEGLGPHLPALFSFLIQQQKAETPQLRSIACWVLGRFMRW 470
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A485KZ57_9STRA (Aste57867_13736 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZ57_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 7.830e-17
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVWQ-RESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            +   P LL  LQERL STD W+ RES +L+LGA +EGC++G+ PHLP LF +L+       P +RSI CW LGR+  +
Sbjct:  403 VEILPILLPLLQERLSSTDHWRVRESGILALGAIAEGCMEGIVPHLPQLFPYLLTLMEDPAPYIRSITCWTLGRYANW 480
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A067CKB5_SAPPC (Importin N-terminal domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CKB5_SAPPC)

HSP 1 Score: 82.8 bits (203), Expect = 1.070e-16
Identity = 40/78 (51.28%), Postives = 51/78 (65.38%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVWQ-RESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            +   P LL  LQERLG T  W  RES +L+LGA +EGC+DG+ PHLPALF +L+       P +RSI CW LGR+  +
Sbjct:  398 VDILPILLPLLQERLGHTGHWAVRESGILALGAIAEGCMDGILPHLPALFPYLLTLMDDPAPYIRSITCWTLGRYANW 475
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A1V9Z3M0_9STRA (Transportin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z3M0_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.460e-16
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVWQ-RESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            +   P LL  LQERLG +  W  RES +L+LGA +EGC+DG+ PHLP+LF +L+Q      P +RSI CW LGR+  +
Sbjct:  397 VDILPILLPLLQERLGHSGHWAVRESGILALGAIAEGCMDGILPHLPSLFPYLLQLMDDPAPYIRSITCWTLGRYANW 474
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A3R6YH87_9STRA (Importin N-terminal domain-containing protein n=13 Tax=Aphanomyces TaxID=100860 RepID=A0A3R6YH87_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.940e-16
Identity = 38/78 (48.72%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVWQ-RESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            +   P LL  LQERL +T  W  RES +L+LGA +EGC+DG+ PHLP LF +L+       P +RSI CW LGR+  +
Sbjct:  421 VEILPILLPLLQERLANTGHWSVRESGILALGAIAEGCMDGVVPHLPTLFPYLLTLMRDPAPYIRSITCWTLGRYANW 498
[Close]
BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A6G0WW44_9STRA (Importin N-terminal domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WW44_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.150e-15
Identity = 37/78 (47.44%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVW-QRESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            +   P LL  LQERL +T  W  RES +L+LGA +EGC++G+ PHLP LF +L+       P +RSI CW LGR+  +
Sbjct:  415 VDILPILLPLLQERLSNTGHWCVRESGILALGAIAEGCMEGVVPHLPQLFPYLLTLMEDPAPYIRSITCWTLGRYANW 492
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BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A7S0YTI6_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0YTI6_9CHLO)

HSP 1 Score: 74.3 bits (181), Expect = 1.010e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query:   13 PPLLLCLQERLGSTDVWQRESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRFMRY 231
            P +L  +QERL + D   RESA+L+LGA SEGC DG+ PH+PA+ S L ++     P +R I+CW +GRF  +
Sbjct:  263 PLVLPIVQERLQNPDWRLRESAILALGAVSEGCHDGMRPHVPAVMSMLFERMQDARPMVRIISCWAVGRFSHW 335
[Close]
BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: I4YBW8_WALMC (ARM repeat-containing protein n=1 Tax=Wallemia mellicola (strain ATCC MYA-4683 / CBS 633.66) TaxID=671144 RepID=I4YBW8_WALMC)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   19 LLLCLQERLGSTDVWQRESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRF 222
            LL  L+ERL S D  QRESA+L+LGA SEGC++G+ PHLP L  +L+       P +RSI+CW LGR+
Sbjct:  411 LLPYLKERLFSQDWLQRESAILALGAISEGCIEGIQPHLPQLVPYLVNALNDPKPLVRSISCWSLGRY 478
[Close]
BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: A0A4V4MFX2_9BASI (ARM repeat-containing protein n=5 Tax=Wallemia mellicola TaxID=1708541 RepID=A0A4V4MFX2_9BASI)

HSP 1 Score: 74.3 bits (181), Expect = 1.020e-13
Identity = 37/68 (54.41%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   19 LLLCLQERLGSTDVWQRESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRF 222
            LL  L+ERL S D  QRESA+L+LGA SEGC++G+ PHLP L  +L+       P +RSI+CW LGR+
Sbjct:  411 LLPYLKERLFSQDWLQRESAILALGAISEGCIEGIQPHLPQLVPYLVNALNDPKPLVRSISCWSLGRY 478
[Close]
BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Match: M4BCU6_HYAAE (Importin N-terminal domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BCU6_HYAAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.840e-13
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:    1 ISFCPPLLLCLQERLGSTDVWQR-ESAMLSLGAASEGCLDGLGPHLPALFSFLMQQQAAETPQLRSIACWVLGRF 222
            I   P LL  LQERL     W   ES +L+LGA ++GC +G+ PHLP L+ FL+Q+     P +RSI CW L R+
Sbjct:  408 IDILPTLLPLLQERLAQEQPWPLVESGILALGAIADGCYNGITPHLPRLYPFLLQKLEDPAPLIRSITCWTLSRY 482
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12807.1718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L470_9PHAE8.930e-3486.30Importin N-terminal domain-containing protein n=2 ... [more]
A0A485KZ57_9STRA7.830e-1750.00Aste57867_13736 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CKB5_SAPPC1.070e-1651.28Importin N-terminal domain-containing protein n=3 ... [more]
A0A1V9Z3M0_9STRA1.460e-1650.00Transportin n=1 Tax=Thraustotheca clavata TaxID=74... [more]
A0A3R6YH87_9STRA6.940e-1648.72Importin N-terminal domain-containing protein n=13... [more]
A0A6G0WW44_9STRA6.150e-1547.44Importin N-terminal domain-containing protein n=1 ... [more]
A0A7S0YTI6_9CHLO1.010e-1347.95Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
I4YBW8_WALMC1.020e-1354.41ARM repeat-containing protein n=1 Tax=Wallemia mel... [more]
A0A4V4MFX2_9BASI1.020e-1354.41ARM repeat-containing protein n=5 Tax=Wallemia mel... [more]
M4BCU6_HYAAE4.840e-1346.67Importin N-terminal domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12807contigS-dermatodea_contig12807:6571..6810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8.8e-29
Seed eggNOG ortholog2880.D8LLU7
Preferred nameTNPO1
KEGG koko:K10265,ko:K18727,ko:K18752
KEGG TC1.I.1
GOsGO:0000060,GO:0000166,GO:0000278,GO:0000280,GO:0001882,GO:0001883,GO:0002164,GO:0002376,GO:0002520,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005929,GO:0005933,GO:0005934,GO:0005935,GO:0006606,GO:0006607,GO:0006610,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007275,GO:0008104,GO:0008139,GO:0008150,GO:0008565,GO:0009791,GO:0009892,GO:0009894,GO:0009987,GO:0010458,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016441,GO:0016458,GO:0017038,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030031,GO:0030097,GO:0030427,GO:0030705,GO:0031047,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034622,GO:0035166,GO:0035167,GO:0035194,GO:0035195,GO:0035280,GO:0035639,GO:0035735,GO:0036094,GO:0040029,GO:0042073,GO:0042277,GO:0042306,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0045184,GO:0045595,GO:0045596,GO:0046822,GO:0046907,GO:0048285,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051049,GO:0051093,GO:0051147,GO:0051148,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051223,GO:0051233,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0060271,GO:0060341,GO:0061013,GO:0061608,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070727,GO:0070922,GO:0070925,GO:0071702,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072686,GO:0080090,GO:0090087,GO:0097159,GO:0097367,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0140014,GO:0140104,GO:0140142,GO:1900180,GO:1901265,GO:1901363,GO:1903047,GO:1903311,GO:1903827,GO:1904589,GO:1990023
EggNOG free text desc.ribosomal protein import into nucleus
EggNOG OGsKOG2023@1,KOG2023@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924263.1612399-CDS-S-dermatodea_contig12807:6570..68101622924263.1612399-CDS-S-dermatodea_contig12807:6570..6810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12807 6571..6810 +
1694079134.4694998-CDS-S-dermatodea_contig12807:6570..68101694079134.4694998-CDS-S-dermatodea_contig12807:6570..6810Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12807 6571..6810 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12807.1718.1prot_S-dermatodea_contig12807.1718.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12807 6571..6810 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12807.1718.1

>prot_S-dermatodea_contig12807.1718.1 ID=prot_S-dermatodea_contig12807.1718.1|Name=mRNA_S-dermatodea_contig12807.1718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=80bp
ISFCPPLLLCLQERLGSTDVWQRESAMLSLGAASEGCLDGLGPHLPALFS
FLMQQQAAETPQLRSIACWVLGRFMRYRLH
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mRNA from alignment at S-dermatodea_contig12807:6571..6810+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12807.1718.1 ID=mRNA_S-dermatodea_contig12807.1718.1|Name=mRNA_S-dermatodea_contig12807.1718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at S-dermatodea_contig12807:6571..6810+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATCTTTCTGCCCCCCCCTGCTTCTCTGCCTGCAGGAGCGACTCGGGAG
CACAGACGTGTGGCAGCGCGAAAGCGCCATGCTTTCTCTTGGCGCGGCGT
CAGAAGGTTGCCTGGACGGCTTGGGCCCGCATCTGCCGGCTCTCTTCAGC
TTCCTGATGCAGCAGCAGGCCGCAGAGACGCCGCAGCTGAGGAGCATCGC
TTGCTGGGTGCTGGGACGATTCATGAGGTACAGGCTGCAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12807:6571..6810+

>mRNA_S-dermatodea_contig12807.1718.1 ID=mRNA_S-dermatodea_contig12807.1718.1|Name=mRNA_S-dermatodea_contig12807.1718.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at S-dermatodea_contig12807:6571..6810+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATATCTTTCTGCCCCCCCCTGCTTCTCTGCCTGCAGGAGCGACTCGGGAG
CACAGACGTGTGGCAGCGCGAAAGCGCCATGCTTTCTCTTGGCGCGGCGT
CAGAAGGTTGCCTGGACGGCTTGGGCCCGCATCTGCCGGCTCTCTTCAGC
TTCCTGATGCAGCAGCAGGCCGCAGAGACGCCGCAGCTGAGGAGCATCGC
TTGCTGGGTGCTGGGACGATTCATGAGGTACAGGCTGCACATATCTTTCT
GCCCCCCCCTGCTTCTCTGCCTGCAGGAGCGACTCGGGAGCACAGACGTG
TGGCAGCGCGAAAGCGCCATGCTTTCTCTTGGCGCGGCGTCAGAAGGTTG
CCTGGACGGCTTGGGCCCGCATCTGCCGGCTCTCTTCAGCTTCCTGATGC
AGCAGCAGGCCGCAGAGACGCCGCAGCTGAGGAGCATCGCTTGCTGGGTG
CTGGGACGATTCATGAGGTACAGGCTGCAC
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