mRNA_S-dermatodea_contig91.17177.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig91.17177.1
Unique NamemRNA_S-dermatodea_contig91.17177.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig91.17177.1 vs. uniprot
Match: A0A6H5JCM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM5_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.020e-48
Identity = 82/115 (71.30%), Postives = 100/115 (86.96%), Query Frame = 1 
Query:    1 GSPVVGGSELLSVGTFLHAAVPIMKFGRGFEVKMRALEDAVSCELPQENDLLSMVHSRLLCTSRELKALRPGENKYPYSWWTDRLKKRLADWYRRRAVLRELIYEAERSDDEESI 345
            G P +GG ELL+ G FL+ + P+MKFGRGFEVKM+ALE+A+S + P+EN+LLS+V SRLLCT RELKAL+PGE KYPYSWW +RL+K+LADWYRRRAVLRELI+EAERSDDE  +
Sbjct:  242 GWPAIGGRELLAAGMFLYVSAPMMKFGRGFEVKMQALEEALSSDRPEENELLSLVLSRLLCTGRELKALKPGELKYPYSWWAERLQKKLADWYRRRAVLRELIFEAERSDDEGDV 356
[Close]
BLAST of mRNA_S-dermatodea_contig91.17177.1 vs. uniprot
Match: D7FPM2_ECTSI (Myst-related protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPM2_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 5.170e-47
Identity = 80/110 (72.73%), Postives = 98/110 (89.09%), Query Frame = 1 
Query:    1 GSPVVGGSELLSVGTFLHAAVPIMKFGRGFEVKMRALEDAVSCELPQENDLLSMVHSRLLCTSRELKALRPGENKYPYSWWTDRLKKRLADWYRRRAVLRELIYEAERSD 330
            G P +GG ELL+ G FL+ + P+MKFGRGFEVKM+ALE+A+S + P+EN+LLS+VHSRLLCT RELKAL+PGE KYPYSWW +RL+K+L+DWYRRRAVLRELI+EAERSD
Sbjct:  243 GWPAIGGRELLAAGMFLYVSAPMMKFGRGFEVKMQALEEALSSDKPEENELLSLVHSRLLCTGRELKALKPGELKYPYSWWAERLQKKLSDWYRRRAVLRELIFEAERSD 352
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig91.17177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCM5_9PHAE1.020e-4871.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPM2_ECTSI5.170e-4772.73Myst-related protein n=1 Tax=Ectocarpus siliculosu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig91contigS-dermatodea_contig91:40631..41983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue7.6e-41
Seed eggNOG ortholog2880.D7FPM2
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size409
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig91.17177.1prot_S-dermatodea_contig91.17177.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig91 40631..41983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925386.4176724-CDS-S-dermatodea_contig91:40630..407041622925386.4176724-CDS-S-dermatodea_contig91:40630..40704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 40631..40704 +
1694079898.5872197-CDS-S-dermatodea_contig91:40630..407041694079898.5872197-CDS-S-dermatodea_contig91:40630..40704Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 40631..40704 +
1622925386.4276698-CDS-S-dermatodea_contig91:41253..414151622925386.4276698-CDS-S-dermatodea_contig91:41253..41415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 41254..41415 +
1694079898.6004806-CDS-S-dermatodea_contig91:41253..414151694079898.6004806-CDS-S-dermatodea_contig91:41253..41415Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 41254..41415 +
1622925386.438346-CDS-S-dermatodea_contig91:41811..419831622925386.438346-CDS-S-dermatodea_contig91:41811..41983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 41812..41983 +
1694079898.609238-CDS-S-dermatodea_contig91:41811..419831694079898.609238-CDS-S-dermatodea_contig91:41811..41983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig91 41812..41983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig91.17177.1

>prot_S-dermatodea_contig91.17177.1 ID=prot_S-dermatodea_contig91.17177.1|Name=mRNA_S-dermatodea_contig91.17177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
GSPVVGGSELLSVGTFLHAAVPIMKFGRGFEVKMRALEDAVSCELPQEND
LLSMVHSRLLCTSRELKALRPGENKYPYSWWTDRLKKRLADWYRRRAVLR
ELIYEAERSDDEESIAEEARALQDAAAAEAEGGAAR
back to top

mRNA from alignment at S-dermatodea_contig91:40631..41983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig91.17177.1 ID=mRNA_S-dermatodea_contig91.17177.1|Name=mRNA_S-dermatodea_contig91.17177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at S-dermatodea_contig91:40631..41983+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTTCCCCGGTGGTTGGGGGGTCCGAGCTTCTGTCTGTGGGCACGTTTCT
TCACGCGGCTGTGCCCATCATGAAGTGAGTGGCGTGATTTTTTTTAGCGG
TAGCAGTGCAGGGCGTGTCGGTTGTTTTGTGTTGGATTTATCTGTTGTTT
CTTGTTTCGTGCTCGGTGCGCGTTAACGATTATTAGGTTCGCCCACTCCA
GATTATAGACCATGTGGTGGCCACTGTTATTCAAGGCGTGTGTTGTCGAG
GGCACCTTCCCCCGCCTTTTCGACTCAAGTTCGTGCACTAAACGGGTCGA
TTGCGAGCACGCGCATCCGATCGGCGTGACGACGTACGTTTGCGGCGTGC
GTGCGGGCGGGCGCGATTTCTTGCCTTCGATCAGTGTTGGCGCACCTTCG
TGCGACTCTGGTGTGATGTATCGAAGCTATTGCCGTTGTTGCGCCTTCTA
CCGTGCCGAGATTATACACAAAATGGTCACTCGGTTGGATCGGCTGATTC
CCGTCAAGCAAGCCGCTATGGAGGAGGTACTTGTGGCGCCGGTCTGCCAC
TGATCGCCAAGGTTACCGACCCATAGAAATTTTGAGCCACCGCCTTGTCT
GTCTGCCCCGCGCTTGCCGTCAGGTTTGGACGCGGGTTTGAGGTGAAAAT
GCGGGCGCTAGAAGACGCGGTCTCTTGCGAGCTGCCACAGGAGAACGACC
TCTTGTCCATGGTGCACTCTCGCCTTCTCTGCACGTCGCGGGAGCTCAAG
GCCCTGAGACCCGGGGAAAATAAATACCCTTACAGGTCCGTACGAACGTG
TTTGCGTCGCGCAGCAAGGGAGGTTCGGGTTGATCCATTTGTGAGATGTG
CGGGGGGTTTTTGCGTGTCGAACACGCTCGCTGCTGTGGTGCAGGCATTC
GGGTCGGGAGAGGATAGAAGTGCGGAAAACAGAGGGGGCGGCAGGGGGCG
GGGGGTCCTATCTAGTGCAACCGTCAGGAGAATTTTTATTAATATTAGTG
CGTATCATGACCCTGCCACGTTTATTTCTGTACGAAGACGTCATTTTCAT
TACTCTCCCGCTCCAAGGGTACATCCCGCACGACTCCCCGACTATTTTAG
GAACCCGCACCCCAACCCCCACGCTACCCCCGGCCCCGACCCCCCATCTC
CCGCCCCACACACGGTGTGTCGCCACGACAGCTGGTGGACGGACAGGCTC
AAGAAGCGGCTGGCGGACTGGTACCGCAGACGTGCCGTTCTCCGAGAGCT
GATCTACGAGGCGGAAAGATCTGACGACGAAGAAAGCATCGCGGAGGAAG
CTCGAGCCCTGCAGGACGCGGCAGCAGCGGAGGCCGAAGGAGGAGCGGCG
CGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig91:40631..41983+

>mRNA_S-dermatodea_contig91.17177.1 ID=mRNA_S-dermatodea_contig91.17177.1|Name=mRNA_S-dermatodea_contig91.17177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig91:40631..41983+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTTCCCCGGTGGTTGGGGGGTCCGAGCTTCTGTCTGTGGGCACGTTTCT
TCACGCGGCTGTGCCCATCATGAAGGTTCCCCGGTGGTTGGGGGGTCCGA
GCTTCTGTCTGTGGGCACGTTTCTTCACGCGGCTGTGCCCATCATGAAGT
TTGGACGCGGGTTTGAGGTGAAAATGCGGGCGCTAGAAGACGCGGTCTCT
TGCGAGCTGCCACAGGAGAACGACCTCTTGTCCATGGTGCACTCTCGCCT
TCTCTGCACGTCGCGGGAGCTCAAGGCCCTGAGACCCGGGGAAAATAAAT
ACCCTTACAGGTTTGGACGCGGGTTTGAGGTGAAAATGCGGGCGCTAGAA
GACGCGGTCTCTTGCGAGCTGCCACAGGAGAACGACCTCTTGTCCATGGT
GCACTCTCGCCTTCTCTGCACGTCGCGGGAGCTCAAGGCCCTGAGACCCG
GGGAAAATAAATACCCTTACAGCTGGTGGACGGACAGGCTCAAGAAGCGG
CTGGCGGACTGGTACCGCAGACGTGCCGTTCTCCGAGAGCTGATCTACGA
GGCGGAAAGATCTGACGACGAAGAAAGCATCGCGGAGGAAGCTCGAGCCC
TGCAGGACGCGGCAGCAGCGGAGGCCGAAGGAGGAGCGGCGCGGCTGGTG
GACGGACAGGCTCAAGAAGCGGCTGGCGGACTGGTACCGCAGACGTGCCG
TTCTCCGAGAGCTGATCTACGAGGCGGAAAGATCTGACGACGAAGAAAGC
ATCGCGGAGGAAGCTCGAGCCCTGCAGGACGCGGCAGCAGCGGAGGCCGA
AGGAGGAGCGGCGCGG
back to top