prot_S-dermatodea_contig9091.17170.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig9091.17170.1
Unique Nameprot_S-dermatodea_contig9091.17170.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length64
Homology
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BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A4Q2D5Y9_9AGAR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D5Y9_9AGAR)

HSP 1 Score: 50.8 bits (120), Expect = 9.860e-6
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 0 
Query:    4 LIANGVWDQVERP------KGKLV--------GLHYQEAFSPTPAAASIRMVLATATVEDWEPRHVDVEQA 60
            LIANG W+ VE P      KG++V        G+ Y + +SPT  AA++R  LA A +ED E R VD+  A
Sbjct:   94 LIANGTWELVELPPGEKGYKGRVVAKGCSQRPGIGYDDTYSPTFRAATLRTTLAAAGIEDMELRSVDISAA 164
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A4Q2D5Y9_9AGAR9.860e-642.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9091contigS-dermatodea_contig9091:911..1201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9091.17170.1mRNA_S-dermatodea_contig9091.17170.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig9091 902..2084 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig9091.17170.1 ID=prot_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MDGLIANGVWDQVERPKGKLVGLHYQEAFSPTPAAASIRMVLATATVEDW
EPRHVDVEQAVFQ*
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