mRNA_S-dermatodea_contig9091.17170.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE) HSP 1 Score: 157 bits (396), Expect = 5.080e-39 Identity = 102/266 (38.35%), Postives = 147/266 (55.26%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVA-SKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEM--LAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
S+ ++L +DLK +GFEQS +DPCV R ++ E + +HVDDIL A SK ET VA L K++ + ++++GC R+R+ T++I Q Y +++ RF +V TS IPA+ + S E + G+V P+RE VG MW + TRPDI+N V A+ P + H + +KIL Y+L TA L + + DS V++ L Y D+D A RRS SG V + W SRTQ+ A STSE+EY
Sbjct: 322 SRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLA--ETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEA-GDV------PFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHL-SLNFKR-DSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVA---QSTSEAEY 573
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE) HSP 1 Score: 156 bits (394), Expect = 2.640e-38 Identity = 99/266 (37.22%), Postives = 153/266 (57.52%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKP---LSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
S+V N+KL LK +G QS DPC++ K + + V V VDD+L+ S + + L FK+ D+ +A++ +G ISR+R+ + + +DQ Y + RFG+ N + PAA + P LSK++ P +P E K M+ +PY+EAVG+L++A+ + RPDIA AV L ++ NPG H V++IL+Y+ T+D + Y G S E+ Y DSD A D R+S +G L ++SW ++ Q A ST+E+EY
Sbjct: 993 SRVWNIKLDRSLKTIGLRQSKFDPCIYYKSSQKKM-VFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCN--PAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWK-LEYDGTKSS-EITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTAL---STTEAEY 1250
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI) HSP 1 Score: 154 bits (389), Expect = 1.180e-37 Identity = 99/260 (38.08%), Postives = 152/260 (58.46%), Query Frame = 2
Query: 308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPA-AVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
N + L FE S+AD CV R + G+ +LA+ +VDD+L SK ++ +A L + F+I + EY++G I R+R ++T+KI Q Y +A +FG+++ I A LSK+ P+ +AM ++P+REAVG+LM+A ++RPDI AV + ++ ENPG EH + V++I++Y TA GI Y G ++ ++ Y+DSD A PDTRRS SG + A+SW S+ Q I ST+E+EY
Sbjct: 872 NKRFVKFLTTFTFEVSNADRCVMRGEIDGQLVLLAI-YVDDLLCMSKSKTAVDKVMAHLMTEFEIT-IGSTEYFVGFKIKRDRSKKTIKISQCNYLLRVAEKFGMMDAKGISTPAESHMYLSKSMAPEDDDGKQAMAKIPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATY-GIVYDGQNTN-GLIVYSDSDYASDPDTRRSTSGYITVLAGGAVSWMSQRQRI---VTLSTTEAEY 1124
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A182HAB7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB7_AEDAL) HSP 1 Score: 149 bits (375), Expect = 1.700e-37 Identity = 88/250 (35.20%), Postives = 141/250 (56.40%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
S+V N +L LKA G +S+ DPC++ + + ++VDD LV + + L SRFK+K++ +A++ +G I+R+R L +DQ Y + + RF + N+ + P +K L K+ GPKTP E+ MK +P++EAVG+L++A TRPDIA AV L ++ NPG +H V++I++Y+ T D + G DS ++ Y D+D PDTR+S +G + A+SW + Q
Sbjct: 59 SRVWNTQLDEALKAFGLIRSNLDPCLYFILKEDGKMLFVTIYVDDFLVFTNDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITRDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVK-LDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIMRYLRGTLDAKLMYTRGGDS--QLTGYTDADWGGDPDTRKSTTGYVFRKMGGAVSWSVKRQ 305
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB) HSP 1 Score: 148 bits (373), Expect = 3.010e-37 Identity = 95/248 (38.31%), Postives = 141/248 (56.85%), Query Frame = 2
Query: 308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRF--GIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVE--MLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
N++L + G +S D CV+ V G + +LA+ VDD L+ +E FV L+++F+++ + A ++G I RNR+ R L I Q TI +F G N+ PA G+K LS N P+T EV+ MK++PY+EAVGAL++ +T TRPDI+ AV AK NPGV+H + V++I +Y+ T + GI +S SG E ++ + D+D A PD R S SG + + SW SR Q
Sbjct: 142 NIELNDAIVRYGLIRSDEDQCVYHLVEEG-SWILAIFFVDDGLICGTNEKTLEKFVDHLKTKFELRTL-PAGRFLGITIDRNRERRHLSISQPDAVDTILKKFKMGDCNSVSTPAEPGLK-LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREY-GILFSPNPSGKEEEIVGFTDADHAGDPDDRSSTSGCVFICHGGSFSWFSRKQ 385
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE) HSP 1 Score: 148 bits (373), Expect = 3.360e-37 Identity = 94/264 (35.61%), Postives = 142/264 (53.79%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYS-GCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
S+ + LT L +GF Q AD CVFR + G ++ VVHVDDI + + F ++L +K++ + +Y C R+ + L+I Q +A+ +A +G+ +P V +K +E +A ++P+RE VG+LMW TT TRPDIANAV A+ C +P + H + IL YV RT+ +GIT+ G +G+ M + D+D A RRS SGG V+ G ++W SRTQ+ ST+E+EY
Sbjct: 168 SRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKE-RCDKFGSELNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDEN-------EACADVPFRELVGSLMWLTTRTRPDIANAVRPVARYCASPTMVHWKAALGILGYVRRTS-WMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKC---VTLSTTEAEY 419
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM) HSP 1 Score: 149 bits (376), Expect = 4.230e-37 Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 2
Query: 308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
N KL L+ GF +S ADPCV+ + E ++ V++VDD+++ SK ++E+ L+ F IK++ + +Y +G I RNR+++T+ ++Q Y + +A +FG+ + PA K + E E + + PYRE VGALM+ T TRPDIA AV AK CE H ++IL+Y+ T D+ GI ++G G E + YAD++ A DTRRS +G AISW S+ Q A+ S++E+EY
Sbjct: 142 NSKLNKHLEDQGFRRSDADPCVYVRRSTDEYSIV-VIYVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE------EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDM-GIVFNGAIKG-EPIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVAT---SSTEAEY 390
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM) HSP 1 Score: 145 bits (366), Expect = 2.730e-36 Identity = 94/261 (36.02%), Postives = 142/261 (54.41%), Query Frame = 2
Query: 308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEV-LAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKA-MKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
N KL L+ GF +S ADPCV+ V R +++ + +V+VDD+++ S+ + L+ F IK++ + +Y +G I RNR ++T+ ++Q Y Q +A +FG+ + P N P E + + PYRE VGALM+ T TRPDIA AV AK CE H ++IL+Y+ T DL G+ ++G G E++ YAD+ A DTRRS +G AISW S+ Q A+ S++E+EY
Sbjct: 56 NSKLNKHLEGQGFHRSAADPCVY--VRRSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHT-----PADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDL-GLVFNGGTKG-ELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVAT---SSTEAEY 304
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A1Y1LYU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LYU4_PHOPY) HSP 1 Score: 147 bits (371), Expect = 2.720e-35 Identity = 93/265 (35.09%), Postives = 152/265 (57.36%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
S++ NLKL LK G QS DPC++ V R ++A+ +VDD+++ S L S FK+KD+ +A + +G I+R+R+ + + +DQ Y +++ +F + + + + PA +G K LS N P + E + M +PY+EAVG+L++A ++RPDI+ AV ++ NPG+ H ++I++Y LR + + G S +++ YADSD A D RRS +G A L+ AISW ++ Q + ST+ESEY
Sbjct: 785 SRIWNLKLDECLKRCGLTQSKTDPCIYYNVTRSMMLIVAI-YVDDMMIFSNDVTAKTRLKNQLMSEFKVKDIGEARFVLGMQITRDRKNKKIWLDQQSYVESLLKKFKMWDCNPVDTPALLGEK-LSINMCPNSEDEAEKMSRVPYQEAVGSLLFAAQVSRPDISFAVNNVSRYTRNPGLTHWTATKRIMRY-LRGTIQYKLEFDGQRSS-QVIGYADSDWANNVDDRRSITGYAFLKNGTAISWGTKRQSTVSL---STTESEY 1042
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT) HSP 1 Score: 145 bits (365), Expect = 1.780e-34 Identity = 90/251 (35.86%), Postives = 140/251 (55.78%), Query Frame = 2
Query: 296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGI--VNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYS-GCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
S+V N KL LK++GF+QS D CV+ K+ G ++ ++VDD+++ S ++ L F++KDM A++ +G I+ + + +DQ Y + I N+FG+ S P K LSK + P P E++ MK++PY+EA+G LM+ + TRPDI+ V ++ NPG EH V+ + +Y LR +TY+ G +S E++AY D+D A D R+S SG +L AISW S Q
Sbjct: 1035 SRVWNRKLDEKLKSLGFQQSTYDTCVYFKI-EGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITETKS--CITLDQQHYIEEILNKFGMSECKPSYTPMQHNQK-LSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRY-LRGTSSYNLTYNRGSNSASEVVAYCDADWASDLDDRKSTSGFVLLAQGGAISWRSNKQ 1280 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig9091.17170.1 >prot_S-dermatodea_contig9091.17170.1 ID=prot_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp MDGLIANGVWDQVERPKGKLVGLHYQEAFSPTPAAASIRMVLATATVEDWback to top mRNA from alignment at S-dermatodea_contig9091:902..2084+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig9091.17170.1 ID=mRNA_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1183bp|location=Sequence derived from alignment at S-dermatodea_contig9091:902..2084+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig9091:902..2084+ >mRNA_S-dermatodea_contig9091.17170.1 ID=mRNA_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig9091:902..2084+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |