mRNA_S-dermatodea_contig9091.17170.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9091.17170.1
Unique NamemRNA_S-dermatodea_contig9091.17170.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 5.080e-39
Identity = 102/266 (38.35%), Postives = 147/266 (55.26%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVA-SKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEM--LAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            S+   ++L +DLK +GFEQS +DPCV R ++  E   +  +HVDDIL A SK     ET VA L      K++ + ++++GC   R+R+  T++I Q  Y +++  RF +V TS IPA+  +   S  E  +  G+V      P+RE VG  MW  + TRPDI+N V   A+    P + H +  +KIL Y+L TA L  + +   DS V++  L Y D+D A     RRS SG  V      + W SRTQ+  A    STSE+EY
Sbjct:  322 SRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDILYAGSKSLA--ETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPASPTVVNRSVMENEEA-GDV------PFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHL-SLNFKR-DSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVA---QSTSEAEY 573          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A0A9Z683_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z683_LYGHE)

HSP 1 Score: 156 bits (394), Expect = 2.640e-38
Identity = 99/266 (37.22%), Postives = 153/266 (57.52%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKP---LSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            S+V N+KL   LK +G  QS  DPC++ K  + +  V   V VDD+L+ S      +   + L   FK+ D+ +A++ +G  ISR+R+ + + +DQ  Y   +  RFG+ N +  PAA  + P   LSK++ P +P E K M+ +PY+EAVG+L++A+ + RPDIA AV L ++   NPG  H   V++IL+Y+  T+D   + Y G  S  E+  Y DSD A   D R+S +G   L    ++SW ++ Q   A    ST+E+EY
Sbjct:  993 SRVWNIKLDRSLKTIGLRQSKFDPCIYYKSSQKKM-VFVAVWVDDLLIFSDDKKLTQEVKSQLMKCFKMTDIGEAKFVLGFQISRDRERKKIWMDQRAYIDNVLIRFGMENCN--PAATPLDPNIKLSKDQQPSSPDERKKMEAIPYQEAVGSLLFASQVCRPDIAFAVSLVSRFNSNPGPAHWAAVKRILRYMKGTSDWK-LEYDGTKSS-EITGYCDSDFASDVDERKSVTGYVFLMCDGSVSWGTKKQPTTAL---STTEAEY 1250          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A0J7KA47_LASNI (Retroelement pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KA47_LASNI)

HSP 1 Score: 154 bits (389), Expect = 1.180e-37
Identity = 99/260 (38.08%), Postives = 152/260 (58.46%), Query Frame = 2
Query:  308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPA-AVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            N +    L    FE S+AD CV R  + G+  +LA+ +VDD+L  SK    ++  +A L + F+I  +   EY++G  I R+R ++T+KI Q  Y   +A +FG+++   I   A     LSK+  P+     +AM ++P+REAVG+LM+A  ++RPDI  AV + ++  ENPG EH + V++I++Y   TA   GI Y G ++   ++ Y+DSD A  PDTRRS SG   +    A+SW S+ Q I      ST+E+EY
Sbjct:  872 NKRFVKFLTTFTFEVSNADRCVMRGEIDGQLVLLAI-YVDDLLCMSKSKTAVDKVMAHLMTEFEIT-IGSTEYFVGFKIKRDRSKKTIKISQCNYLLRVAEKFGMMDAKGISTPAESHMYLSKSMAPEDDDGKQAMAKIPFREAVGSLMFAACVSRPDIMFAVSVVSRYLENPGPEHWQAVKRIIRYAKETATY-GIVYDGQNTN-GLIVYSDSDYASDPDTRRSTSGYITVLAGGAVSWMSQRQRI---VTLSTTEAEY 1124          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A182HAB7_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182HAB7_AEDAL)

HSP 1 Score: 149 bits (375), Expect = 1.700e-37
Identity = 88/250 (35.20%), Postives = 141/250 (56.40%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
            S+V N +L   LKA G  +S+ DPC++  +      +   ++VDD LV +      +     L SRFK+K++ +A++ +G  I+R+R    L +DQ  Y + +  RF + N+  +  P    +K L K+ GPKTP E+  MK +P++EAVG+L++A   TRPDIA AV L ++   NPG +H   V++I++Y+  T D   +   G DS  ++  Y D+D    PDTR+S +G    +   A+SW  + Q
Sbjct:   59 SRVWNTQLDEALKAFGLIRSNLDPCLYFILKEDGKMLFVTIYVDDFLVFTNDEELKKKLKCYLNSRFKMKNIGEAKFCLGLQITRDRTNGKLFLDQQAYIKDVLKRFNMENSKPVATPMDSNVK-LDKSRGPKTPEEMAEMKNVPFKEAVGSLLYAAQATRPDIAFAVNLVSQFSINPGRQHWEAVKRIMRYLRGTLDAKLMYTRGGDS--QLTGYTDADWGGDPDTRKSTTGYVFRKMGGAVSWSVKRQ 305          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: UPI001E1BA9BB (uncharacterized protein LOC116922675 n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA9BB)

HSP 1 Score: 148 bits (373), Expect = 3.010e-37
Identity = 95/248 (38.31%), Postives = 141/248 (56.85%), Query Frame = 2
Query:  308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRF--GIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVE--MLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
            N++L   +   G  +S  D CV+  V  G + +LA+  VDD L+       +E FV  L+++F+++ +  A  ++G  I RNR+ R L I Q     TI  +F  G  N+   PA  G+K LS N  P+T  EV+ MK++PY+EAVGAL++ +T TRPDI+ AV   AK   NPGV+H + V++I +Y+  T +  GI +S   SG E  ++ + D+D A  PD R S SG   +    + SW SR Q
Sbjct:  142 NIELNDAIVRYGLIRSDEDQCVYHLVEEG-SWILAIFFVDDGLICGTNEKTLEKFVDHLKTKFELRTL-PAGRFLGITIDRNRERRHLSISQPDAVDTILKKFKMGDCNSVSTPAEPGLK-LSLNMSPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREY-GILFSPNPSGKEEEIVGFTDADHAGDPDDRSSTSGCVFICHGGSFSWFSRKQ 385          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A6H5KGB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.360e-37
Identity = 94/264 (35.61%), Postives = 142/264 (53.79%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYS-GCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            S+  +  LT  L  +GF Q  AD CVFR +  G   ++ VVHVDDI    +     + F ++L     +K++ +  +Y  C   R+ +   L+I Q  +A+ +A  +G+     +P  V +K    +E        +A  ++P+RE VG+LMW TT TRPDIANAV   A+ C +P + H +    IL YV RT+  +GIT+  G  +G+ M  + D+D A     RRS SGG V+ G   ++W SRTQ+       ST+E+EY
Sbjct:  168 SRQWHAHLTRCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVDDIFAVGQKE-RCDKFGSELNEMVPVKNLGELRWYSACFYQRDLERGLLRISQQRFAEELAAEYGVEWGKSVPLPVSVKLTDFDEN-------EACADVPFRELVGSLMWLTTRTRPDIANAVRPVARYCASPTMVHWKAALGILGYVRRTS-WMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKC---VTLSTTEAEY 419          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: H3G9E3_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G9E3_PHYRM)

HSP 1 Score: 149 bits (376), Expect = 4.230e-37
Identity = 95/261 (36.40%), Postives = 146/261 (55.94%), Query Frame = 2
Query:  308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            N KL   L+  GF +S ADPCV+ +    E  ++ V++VDD+++ SK   ++E+    L+  F IK++ + +Y +G  I RNR+++T+ ++Q  Y + +A +FG+     +  PA    K +   E      E   + + PYRE VGALM+  T TRPDIA AV   AK CE     H    ++IL+Y+  T D+ GI ++G   G E + YAD++ A   DTRRS +G        AISW S+ Q   A+   S++E+EY
Sbjct:  142 NSKLNKHLEDQGFRRSDADPCVYVRRSTDEYSIV-VIYVDDLMLFSKTKEHIESIKVALKKEFSIKELGELKYCLGIEIDRNREDKTILMNQRAYIKRLAEKFGVDKCKAVHTPADCNSKLVKMTE------EEAFVAKYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDM-GIVFNGAIKG-EPIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVAT---SSTEAEY 390          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 145 bits (366), Expect = 2.730e-36
Identity = 94/261 (36.02%), Postives = 142/261 (54.41%), Query Frame = 2
Query:  308 NLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEV-LAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMIPAAVGIKPLSKNEGPKTPGEVKA-MKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            N KL   L+  GF +S ADPCV+  V R +++  + +V+VDD+++ S+    +      L+  F IK++ + +Y +G  I RNR ++T+ ++Q  Y Q +A +FG+     +       P   N     P E +  +   PYRE VGALM+  T TRPDIA AV   AK CE     H    ++IL+Y+  T DL G+ ++G   G E++ YAD+  A   DTRRS +G        AISW S+ Q   A+   S++E+EY
Sbjct:   56 NSKLNKHLEGQGFHRSAADPCVY--VRRSDSKFSIIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHT-----PADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDL-GLVFNGGTKG-ELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVAT---SSTEAEY 304          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: A0A1Y1LYU4_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LYU4_PHOPY)

HSP 1 Score: 147 bits (371), Expect = 2.720e-35
Identity = 93/265 (35.09%), Postives = 152/265 (57.36%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGIVNTSMI--PAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYSGCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQEIAASAVNSTSESEY 1084
            S++ NLKL   LK  G  QS  DPC++  V R    ++A+ +VDD+++ S            L S FK+KD+ +A + +G  I+R+R+ + + +DQ  Y +++  +F + + + +  PA +G K LS N  P +  E + M  +PY+EAVG+L++A  ++RPDI+ AV   ++   NPG+ H    ++I++Y LR      + + G  S  +++ YADSD A   D RRS +G A L+   AISW ++ Q   +    ST+ESEY
Sbjct:  785 SRIWNLKLDECLKRCGLTQSKTDPCIYYNVTRSMMLIVAI-YVDDMMIFSNDVTAKTRLKNQLMSEFKVKDIGEARFVLGMQITRDRKNKKIWLDQQSYVESLLKKFKMWDCNPVDTPALLGEK-LSINMCPNSEDEAEKMSRVPYQEAVGSLLFAAQVSRPDISFAVNNVSRYTRNPGLTHWTATKRIMRY-LRGTIQYKLEFDGQRSS-QVIGYADSDWANNVDDRRSITGYAFLKNGTAISWGTKRQSTVSL---STTESEY 1042          
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Match: W4VRQ4_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt n=1 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRQ4_9DIPT)

HSP 1 Score: 145 bits (365), Expect = 1.780e-34
Identity = 90/251 (35.86%), Postives = 140/251 (55.78%), Query Frame = 2
Query:  296 SKVENLKLTTDLKAVGFEQSHADPCVFRKVVRGEAEVLAVVHVDDILVASKGAGNMETFVADLRSRFKIKDMRDAEYYMGCHISRNRQERTLKIDQHLYAQTIANRFGI--VNTSMIPAAVGIKPLSKNEGPKTPGEVKAMKELPYREAVGALMWATTMTRPDIANAV*LAAKMCENPGVEHKRTVEKILQYVLRTADLLGITYS-GCDSGVEMLAYADSDRAM*PDTRRSASGGAVLQGLDAISWHSRTQ 1039
            S+V N KL   LK++GF+QS  D CV+ K+  G   ++  ++VDD+++ S     ++     L   F++KDM  A++ +G  I+  +    + +DQ  Y + I N+FG+     S  P     K LSK + P  P E++ MK++PY+EA+G LM+ +  TRPDI+  V   ++   NPG EH   V+ + +Y LR      +TY+ G +S  E++AY D+D A   D R+S SG  +L    AISW S  Q
Sbjct: 1035 SRVWNRKLDEKLKSLGFQQSTYDTCVYFKI-EGNRILIIAIYVDDMMLFSNCLNWLKEIKEKLGREFRMKDMGKAKFCLGIKITETKS--CITLDQQHYIEEILNKFGMSECKPSYTPMQHNQK-LSKADSPNLPAEIEDMKQVPYQEAIGCLMYLSNCTRPDISFVVNKLSRFNNNPGTEHWAAVKHLFRY-LRGTSSYNLTYNRGSNSASEVVAYCDADWASDLDDRKSTSGFVLLAQGGAISWRSNKQ 1280          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9091.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPV1_9PHAE5.080e-3938.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9Z683_LYGHE2.640e-3837.22Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7KA47_LASNI1.180e-3738.08Retroelement pol polyprotein n=1 Tax=Lasius niger ... [more]
A0A182HAB7_AEDAL1.700e-3735.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001E1BA9BB3.010e-3738.31uncharacterized protein LOC116922675 n=1 Tax=Daphn... [more]
A0A6H5KGB0_9PHAE3.360e-3735.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G9E3_PHYRM4.230e-3736.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB17_PHYRM2.730e-3636.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1LYU4_PHOPY2.720e-3535.09Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
W4VRQ4_9DIPT1.780e-3435.86Putative retrovirus-related pol polyprotein from t... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9091contigS-dermatodea_contig9091:902..2084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1084
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9091.17170.1prot_S-dermatodea_contig9091.17170.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9091 911..1201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.6554422-UTR-S-dermatodea_contig9091:901..9101622925385.6554422-UTR-S-dermatodea_contig9091:901..910Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9091 902..910 +
1694079898.1038516-UTR-S-dermatodea_contig9091:901..9101694079898.1038516-UTR-S-dermatodea_contig9091:901..910Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9091 902..910 +
1622925385.6916173-UTR-S-dermatodea_contig9091:1201..20841622925385.6916173-UTR-S-dermatodea_contig9091:1201..2084Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9091 1202..2084 +
1694079898.1399708-UTR-S-dermatodea_contig9091:1201..20841694079898.1399708-UTR-S-dermatodea_contig9091:1201..2084Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9091 1202..2084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925385.671841-CDS-S-dermatodea_contig9091:910..9731622925385.671841-CDS-S-dermatodea_contig9091:910..973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9091 911..973 +
1694079898.1141534-CDS-S-dermatodea_contig9091:910..9731694079898.1141534-CDS-S-dermatodea_contig9091:910..973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9091 911..973 +
1622925385.6814897-CDS-S-dermatodea_contig9091:1072..12011622925385.6814897-CDS-S-dermatodea_contig9091:1072..1201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9091 1073..1201 +
1694079898.1304145-CDS-S-dermatodea_contig9091:1072..12011694079898.1304145-CDS-S-dermatodea_contig9091:1072..1201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9091 1073..1201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9091.17170.1

>prot_S-dermatodea_contig9091.17170.1 ID=prot_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=64bp
MDGLIANGVWDQVERPKGKLVGLHYQEAFSPTPAAASIRMVLATATVEDW
EPRHVDVEQAVFQ*
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mRNA from alignment at S-dermatodea_contig9091:902..2084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9091.17170.1 ID=mRNA_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1183bp|location=Sequence derived from alignment at S-dermatodea_contig9091:902..2084+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAAACGAAAATGGACGGCCTGATTGCCAACGGAGTGTGGGACCAAGTGGA ACGTCCCAAAGGCAAATTGGTGGTGGGAACGCGAATGCTATACAAACGGA GGATAGGCAAGAACGGCGACGTGAAAAAGTACAAGTATCGTCTTGTCGCT CAGGGGATTCGTCAGATCAAGGGTCTGCATTACCAAGAGGCGTTCTCTCC CACGCCCGCGGCGGCTAGCATTCGGATGGTGCTTGCTACCGCAACGGTGG AGGATTGGGAGCCCCGACACGTGGACGTCGAACAAGCGGTTTTTCAGTAG GGCATCGTTGAAGAGATCTATATAGAGCTGCCAGAAGACTGCCAGGCATT CCCGGGAGCAGCGGGGAAGTTGAATAAGTCCATCTATGGCCTGGTCCAAG GTGGAAAATTTAAAGCTTACGACTGATTTGAAAGCGGTTGGGTTCGAACA GTCACACGCGGACCCTTGTGTGTTCCGCAAAGTCGTTCGTGGAGAAGCGG AGGTATTAGCTGTGGTCCATGTGGACGACATACTGGTGGCAAGCAAGGGA GCAGGGAACATGGAAACGTTTGTGGCAGACCTACGCTCGAGGTTCAAGAT AAAGGATATGAGAGATGCAGAATACTACATGGGCTGCCATATCTCACGAA ACCGGCAAGAGAGAACACTGAAGATCGACCAACACCTCTACGCGCAGACG ATAGCGAACCGCTTCGGGATAGTAAATACAAGCATGATCCCGGCAGCAGT GGGCATCAAGCCTCTATCAAAGAACGAAGGGCCTAAGACCCCAGGGGAGG TGAAGGCGATGAAGGAATTGCCCTACAGGGAGGCAGTGGGGGCACTCATG TGGGCGACGACTATGACCAGACCTGATATTGCTAATGCCGTCTGACTTGC AGCAAAGATGTGCGAAAACCCCGGCGTGGAACACAAGAGAACTGTGGAGA AGATTTTGCAATATGTGCTTAGGACCGCGGACCTGCTGGGTATCACCTAC TCAGGGTGTGATAGTGGGGTAGAGATGCTAGCGTACGCCGATTCAGATCG TGCGATGTGACCAGACACCCGGCGCTCAGCGTCAGGAGGAGCGGTGCTGC AAGGGTTGGACGCGATTAGCTGGCATTCGAGGACCCAGGAAATTGCAGCT TCAGCAGTAAATAGTACTTCGGAATCGGAATAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig9091:902..2084+

>mRNA_S-dermatodea_contig9091.17170.1 ID=mRNA_S-dermatodea_contig9091.17170.1|Name=mRNA_S-dermatodea_contig9091.17170.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at S-dermatodea_contig9091:902..2084+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGGCCTGATTGCCAACGGAGTGTGGGACCAAGTGGAACGTCCCAA
AGGCAAATTGGTGATGGACGGCCTGATTGCCAACGGAGTGTGGGACCAAG
TGGAACGTCCCAAAGGCAAATTGGTGGGTCTGCATTACCAAGAGGCGTTC
TCTCCCACGCCCGCGGCGGCTAGCATTCGGATGGTGCTTGCTACCGCAAC
GGTGGAGGATTGGGAGCCCCGACACGTGGACGTCGAACAAGCGGTTTTTC
AGTAGGGTCTGCATTACCAAGAGGCGTTCTCTCCCACGCCCGCGGCGGCT
AGCATTCGGATGGTGCTTGCTACCGCAACGGTGGAGGATTGGGAGCCCCG
ACACGTGGACGTCGAACAAGCGGTTTTTCAGTAG
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