mRNA_S-dermatodea_contig9073.17155.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9073.17155.1
Unique NamemRNA_S-dermatodea_contig9073.17155.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9073.17155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9073contigS-dermatodea_contig9073:3802..4152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925384.6931355-UTR-S-dermatodea_contig9073:3801..38041622925384.6931355-UTR-S-dermatodea_contig9073:3801..3804Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9073 3802..3804 +
1694079897.4963396-UTR-S-dermatodea_contig9073:3801..38041694079897.4963396-UTR-S-dermatodea_contig9073:3801..3804Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9073 3802..3804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925384.7090242-CDS-S-dermatodea_contig9073:3804..41521622925384.7090242-CDS-S-dermatodea_contig9073:3804..4152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9073 3805..4152 +
1694079897.5105166-CDS-S-dermatodea_contig9073:3804..41521694079897.5105166-CDS-S-dermatodea_contig9073:3804..4152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9073 3805..4152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9073.17155.1prot_S-dermatodea_contig9073.17155.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9073 3805..4152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9073.17155.1

>prot_S-dermatodea_contig9073.17155.1 ID=prot_S-dermatodea_contig9073.17155.1|Name=mRNA_S-dermatodea_contig9073.17155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
MSPTPNWQHTQPALKRVAAIRRECTNPTFPSPCKSPATDDTKYPNRGKAD
TSRRHRPQTSETCNRKWCHPNWRQTASLHTGESSSVATAGSNALRSLPTY
APCNRKSGHTNWRQSA
back to top

mRNA from alignment at S-dermatodea_contig9073:3802..4152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9073.17155.1 ID=mRNA_S-dermatodea_contig9073.17155.1|Name=mRNA_S-dermatodea_contig9073.17155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at S-dermatodea_contig9073:3802..4152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGATGTCGCCTACCCCCAACTGGCAACACACACAGCCAGCCCTCAAACG
GGTCGCCGCCATCCGGCGGGAATGCACCAATCCAACGTTCCCGTCGCCAT
GCAAATCACCTGCCACTGATGATACCAAATACCCCAACCGGGGGAAAGCG
GACACGTCGCGGAGGCATCGCCCCCAAACCTCCGAGACATGCAACAGGAA
GTGGTGTCATCCCAACTGGCGACAAACAGCCAGCCTCCACACAGGGGAGT
CGTCTTCCGTTGCAACAGCCGGATCCAACGCTCTGCGTTCCCTGCCTACC
TACGCCCCATGCAACAGGAAGTCGGGTCATACCAACTGGCGACAATCAGC
A
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig9073:3802..4152+

>mRNA_S-dermatodea_contig9073.17155.1 ID=mRNA_S-dermatodea_contig9073.17155.1|Name=mRNA_S-dermatodea_contig9073.17155.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig9073:3802..4152+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGCCTACCCCCAACTGGCAACACACACAGCCAGCCCTCAAACGGGT
CGCCGCCATCCGGCGGGAATGCACCAATCCAACGTTCCCGTCGCCATGCA
AATCACCTGCCACTGATGATACCAAATACCCCAACCGGGGGAAAGCGGAC
ACGTCGCGGAGGCATCGCCCCCAAACCTCCGAGACATGCAACAGGAAGTG
GTGTCATCCCAACTGGCGACAAACAGCCAGCCTCCACACAGGGGAGTCGT
CTTCCGTTGCAACAGCCGGATCCAACGCTCTGCGTTCCCTGCCTACCTAC
GCCCCATGCAACAGGAAGTCGGGTCATACCAACTGGCGACAATCAGCAAT
GTCGCCTACCCCCAACTGGCAACACACACAGCCAGCCCTCAAACGGGTCG
CCGCCATCCGGCGGGAATGCACCAATCCAACGTTCCCGTCGCCATGCAAA
TCACCTGCCACTGATGATACCAAATACCCCAACCGGGGGAAAGCGGACAC
GTCGCGGAGGCATCGCCCCCAAACCTCCGAGACATGCAACAGGAAGTGGT
GTCATCCCAACTGGCGACAAACAGCCAGCCTCCACACAGGGGAGTCGTCT
TCCGTTGCAACAGCCGGATCCAACGCTCTGCGTTCCCTGCCTACCTACGC
CCCATGCAACAGGAAGTCGGGTCATACCAACTGGCGACAATCAGCA
back to top