mRNA_S-dermatodea_contig90679.17150.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig90679.17150.1
Unique NamemRNA_S-dermatodea_contig90679.17150.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 1.950e-36
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 1
Query:   13 RQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
            RQAHKRSLQVARK YWFEKF+WF++SENYLV+SGR+AQQNEVVVKKYLRPGDIYVHADLHGA+SCVVRNK
Sbjct:  652 RQAHKRSLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNK 721          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A7S2T9B4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9B4_9CHLO)

HSP 1 Score: 113 bits (283), Expect = 3.570e-30
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   25 KRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNKV 225
            K   +VARK YWFEKF WFV+SENYLV+SGRDAQQNE++VK+YL   D+YVHAD+HGAASCVVRN+V
Sbjct:   37 KPGFKVARKQYWFEKFDWFVSSENYLVVSGRDAQQNELLVKRYLTTHDVYVHADIHGAASCVVRNRV 103          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 120 bits (302), Expect = 4.300e-30
Identity = 51/69 (73.91%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   16 QAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
            Q  KR L+  RK YWFEKFHWF+TSEN+LVL+GRDAQQNE +VK+YLRPGD YVHAD+HGA+SC++RNK
Sbjct:  516 QTMKRQLKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNK 584          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A8B9GSV1_ASTMX (NFACT-R_1 domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9GSV1_ASTMX)

HSP 1 Score: 111 bits (277), Expect = 6.550e-30
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
            ++Q ARK YWFEKF WF++SENYLV++GRD QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct:   47 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 109          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3Q3KZ28_9LABR (NFACT-R_1 domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3KZ28_9LABR)

HSP 1 Score: 111 bits (277), Expect = 7.350e-30
Identity = 46/63 (73.02%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
            ++Q ARK YWFEKF WF++SENYLV++GRD QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct:   59 TIQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3Q3JY82_MONAL (NFACT-R_1 domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3JY82_MONAL)

HSP 1 Score: 110 bits (274), Expect = 1.980e-29
Identity = 44/63 (69.84%), Postives = 56/63 (88.89%), Query Frame = 1
Query:   31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
            ++Q ARK YWFEKF WF++SENYL+++GRD QQNE++VK+Y R GDIYVHADLHGA SCV++N
Sbjct:   59 TIQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEIIVKRYFRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: W7TDM9_9STRA (Nuclear export mediator factor nemf n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDM9_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.370e-29
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1
Query:   10 ARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
            ++Q  KR+L V RK YWFEKFHWF+TS+N+LV+SGRDAQQNE++VK+YLR GD YVHADL GAASCVVR+K
Sbjct:   17 SKQQRKRTLSVVRKPYWFEKFHWFITSDNHLVVSGRDAQQNELLVKRYLRVGDAYVHADLPGAASCVVRHK 87          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A3B4BJB3_9GOBI (Nuclear export mediator factor n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BJB3_9GOBI)

HSP 1 Score: 109 bits (273), Expect = 3.250e-29
Identity = 44/63 (69.84%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
            ++Q ARK YWFEKF WF+++ENYLV++GRD QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct:   58 TIQKARKVYWFEKFLWFISAENYLVIAGRDQQQNEMIVKRYLRAGDVYVHADLHGATSCVIKN 120          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A8M9PZY7_DANRE (nuclear export mediator factor Nemf-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PZY7_DANRE)

HSP 1 Score: 110 bits (275), Expect = 5.490e-29
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = 1
Query:   31 SLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 219
            S+Q ARK YWFEKF WF++SENYL+++GRD QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct:   82 SIQKARKVYWFEKFLWFLSSENYLIIAGRDQQQNEMIVKRYLRAGDLYVHADLHGATSCVIKN 144          
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Match: A0A4D9CTN6_9STRA (NFACT-R_1 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTN6_9STRA)

HSP 1 Score: 117 bits (293), Expect = 7.020e-29
Identity = 52/71 (73.24%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   10 ARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 222
            ++Q  KR+L V RK YWFEKFHWF+TS+N+LV+SGRDAQQNE++VK+YLR GD YVHADL GAASCVVR K
Sbjct:  657 SKQQRKRTLSVVRKPYWFEKFHWFITSDNHLVVSGRDAQQNELLVKRYLRAGDAYVHADLTGAASCVVRRK 727          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig90679.17150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI1.950e-3690.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2T9B4_9CHLO3.570e-3074.63Hypothetical protein (Fragment) n=2 Tax=Chloropico... [more]
A0A6U1AHC6_9STRA4.300e-3073.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8B9GSV1_ASTMX6.550e-3073.02NFACT-R_1 domain-containing protein n=1 Tax=Astyan... [more]
A0A3Q3KZ28_9LABR7.350e-3073.02NFACT-R_1 domain-containing protein n=4 Tax=Percom... [more]
A0A3Q3JY82_MONAL1.980e-2969.84NFACT-R_1 domain-containing protein n=2 Tax=Percom... [more]
W7TDM9_9STRA2.370e-2973.24Nuclear export mediator factor nemf n=3 Tax=Nannoc... [more]
A0A3B4BJB3_9GOBI3.250e-2969.84Nuclear export mediator factor n=1 Tax=Periophthal... [more]
A0A8M9PZY7_DANRE5.490e-2971.43nuclear export mediator factor Nemf-like n=1 Tax=D... [more]
A0A4D9CTN6_9STRA7.020e-2973.24NFACT-R_1 domain-containing protein n=2 Tax=Monodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig90679contigS-dermatodea_contig90679:224..460 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue5.4e-31
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925383.9798014-CDS-S-dermatodea_contig90679:223..4601622925383.9798014-CDS-S-dermatodea_contig90679:223..460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90679 224..460 +
1694079896.8706698-CDS-S-dermatodea_contig90679:223..4601694079896.8706698-CDS-S-dermatodea_contig90679:223..460Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig90679 224..460 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig90679.17150.1prot_S-dermatodea_contig90679.17150.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig90679 224..460 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig90679.17150.1

>prot_S-dermatodea_contig90679.17150.1 ID=prot_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
QNAARQAHKRSLQVARKTYWFEKFHWFVTSENYLVLSGRDAQQNEVVVKK
YLRPGDIYVHADLHGAASCVVRNKVIFC*
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mRNA from alignment at S-dermatodea_contig90679:224..460+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig90679.17150.1 ID=mRNA_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at S-dermatodea_contig90679:224..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAATGCCGCGCGACAGGCCCACAAGCGCAGCCTCCAGGTGGCGCGTAA GACGTACTGGTTCGAGAAGTTCCACTGGTTCGTCACCTCCGAGAACTACC TCGTTCTCAGCGGGCGGGACGCGCAGCAGAACGAGGTCGTCGTGAAGAAG TATCTCAGGCCCGGCGACATCTACGTTCACGCGGATCTGCACGGCGCGGC CTCCTGCGTCGTCAGGAACAAGGTGATTTTTTGTTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig90679:224..460+

>mRNA_S-dermatodea_contig90679.17150.1 ID=mRNA_S-dermatodea_contig90679.17150.1|Name=mRNA_S-dermatodea_contig90679.17150.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig90679:224..460+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAAATGCCGCGCGACAGGCCCACAAGCGCAGCCTCCAGGTGGCGCGTAA
GACGTACTGGTTCGAGAAGTTCCACTGGTTCGTCACCTCCGAGAACTACC
TCGTTCTCAGCGGGCGGGACGCGCAGCAGAACGAGGTCGTCGTGAAGAAG
TATCTCAGGCCCGGCGACATCTACGTTCACGCGGATCTGCACGGCGCGGC
CTCCTGCGTCGTCAGGAACAAGGTGATTTTTTGTTAACAAAATGCCGCGC
GACAGGCCCACAAGCGCAGCCTCCAGGTGGCGCGTAAGACGTACTGGTTC
GAGAAGTTCCACTGGTTCGTCACCTCCGAGAACTACCTCGTTCTCAGCGG
GCGGGACGCGCAGCAGAACGAGGTCGTCGTGAAGAAGTATCTCAGGCCCG
GCGACATCTACGTTCACGCGGATCTGCACGGCGCGGCCTCCTGCGTCGTC
AGGAACAAGGTGATTTTTTGTTAA
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