mRNA_S-dermatodea_contig9025.17108.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig9025.17108.1
Unique NamemRNA_S-dermatodea_contig9025.17108.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: A0A0A6YYV8_DICDH (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=A0A0A6YYV8_DICDH)

HSP 1 Score: 321 bits (822), Expect = 2.740e-101
Identity = 161/176 (91.48%), Postives = 168/176 (95.45%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKSS 528
            +++VINDSFGL EGLMTTVHAVTATQKTVDGPSKKDWRGGR AG+NIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRL + ASYDEIKAAM AASEGSMKGYLGYTEDAVVSSDFIGD RSSIFDA AGIALTD+FVKLVSWYDNEWGYSNRVLDLITHM K+S
Sbjct:  157 IAKVINDSFGLTEGLMTTVHAVTATQKTVDGPSKKDWRGGRAAGYNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLSKPASYDEIKAAMVAASEGSMKGYLGYTEDAVVSSDFIGDERSSIFDAQAGIALTDEFVKLVSWYDNEWGYSNRVLDLITHMSKAS 332
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: Q9FVP0_ASCNO (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=Q9FVP0_ASCNO)

HSP 1 Score: 311 bits (797), Expect = 1.520e-97
Identity = 156/176 (88.64%), Postives = 167/176 (94.89%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKSS 528
            +++VINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGR AGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFR+PTA+VSVVDLTCRLE+ ASY+EIKAAMKAASEG M G LGYTED+VVSSDFIGD+RSSI DA AGIAL+D FVKLVSWYDNEWGYS RVLDLITHM+KSS
Sbjct:  158 IAKVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRAAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRIPTANVSVVDLTCRLEKPASYEEIKAAMKAASEGPMHGILGYTEDSVVSSDFIGDSRSSILDANAGIALSDTFVKLVSWYDNEWGYSCRVLDLITHMDKSS 333
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: A0A662WN36_9STRA (Gp_dh_C domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WN36_9STRA)

HSP 1 Score: 297 bits (761), Expect = 3.240e-94
Identity = 149/175 (85.14%), Postives = 160/175 (91.43%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKS 525
            L++V+ND FG+KEGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIP LNGKLTGMSFRVPTADVSVVDLT RL   ASYDEIKAA+K ASE  MKG LGYTE++VVSSDF+GD+ SSIFDA AGIALTDDFVKLVSWYDNEWGYS+RVLDLI HM K+
Sbjct:   19 LAKVVNDKFGIKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGACFNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKHASENEMKGILGYTEESVVSSDFVGDSHSSIFDANAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKN 193
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase n=7 Tax=Phytophthora TaxID=4783 RepID=G3P_PHYIN)

HSP 1 Score: 298 bits (764), Expect = 1.200e-92
Identity = 151/175 (86.29%), Postives = 160/175 (91.43%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKS 525
            L++V+ND FG+KEGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIP LNGKLTGMSFRVPTADVSVVDLT RL   ASYDEIKAA+K+ASE  MKG LGYTE AVVSSDFIGD+ SSIFDA AGIALTDDFVKLVSWYDNEWGYS+RVLDLI HM K+
Sbjct:  157 LAKVVNDKFGIKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGACFNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKN 331
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: A0A4D9DI62_9STRA (Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DI62_9STRA)

HSP 1 Score: 298 bits (764), Expect = 2.960e-92
Identity = 150/174 (86.21%), Postives = 162/174 (93.10%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEK 522
            L++VIND+FGL+EGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIP LNGKLTGM+FRVPTADVSVVDLTCRL++GASYDEIKAA+KAASEG M+G LGYTED VVS+DF GD  SSIFDA AGIALT +FVKLVSWYDNE GYSNRVLDLI H+ K
Sbjct:  186 LAKVINDTFGLEEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPALNGKLTGMAFRVPTADVSVVDLTCRLKKGASYDEIKAALKAASEGPMRGILGYTEDDVVSTDFYGDVHSSIFDAKAGIALTPNFVKLVSWYDNEAGYSNRVLDLIKHIAK 359
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: D0NSR1_PHYIT (Glyceraldehyde-3-phosphate dehydrogenase n=25 Tax=Peronosporaceae TaxID=4777 RepID=D0NSR1_PHYIT)

HSP 1 Score: 297 bits (761), Expect = 3.480e-92
Identity = 150/175 (85.71%), Postives = 160/175 (91.43%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKS 525
            L++V+ND +G+KEGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIP LNGKLTGMSFRVPTADVSVVDLT RL   ASYDEIKAA+K+ASE  MKG LGYTE AVVSSDFIGD+ SSIFDA AGIALTDDFVKLVSWYDNEWGYS+RVLDLI HM K+
Sbjct:  158 LAKVVNDKYGIKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGACFNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKSASENEMKGILGYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKN 332
[Close]
BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: A0A3F2RW64_9STRA (Glyceraldehyde-3-phosphate dehydrogenase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RW64_9STRA)

HSP 1 Score: 299 bits (766), Expect = 2.370e-91
Identity = 151/189 (79.89%), Postives = 167/189 (88.36%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKSS*KNHVAKVKCRTH 567
            L++V++D FG+KEGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIP LNGKLTGMSFRVPTADVSVVDLT RL   ASYDEIKAA+K ASE  MKG LGYTE+AVVSSDFIGD+RSSIFDA+AGIALTDDFVKLVSWYDNEWGYS+RVLDLI HM + + +  + +   + H
Sbjct:  158 LAKVVHDKFGIKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGACFNIIPSSTGAAKAVGKVIPSLNGKLTGMSFRVPTADVSVVDLTARLVNPASYDEIKAAIKDASENEMKGILGYTEEAVVSSDFIGDSRSSIFDASAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMRRRTRERDIERALQQGH 346
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: D7FZL5_ECTSI (Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZL5_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 4.020e-91
Identity = 151/176 (85.80%), Postives = 158/176 (89.77%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEKSS 528
            +++VIND+FGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPS TGAAKAVG VIPELNGKLTGM FRVPTADVSVVDLTCRL +GASYD   AAMK           GYTEDAVVSSDFIGD+RSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHM+KSS
Sbjct:  159 MAKVINDTFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSGTGAAKAVGVVIPELNGKLTGMFFRVPTADVSVVDLTCRLTKGASYDFFLAAMKD----------GYTEDAVVSSDFIGDSRSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMDKSS 324
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: UPI001996992B (type I glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Christensenellaceae bacterium NSJ-53 TaxID=2763655 RepID=UPI001996992B)

HSP 1 Score: 293 bits (750), Expect = 1.600e-90
Identity = 146/174 (83.91%), Postives = 159/174 (91.38%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEK 522
            LS+VIND+FG+ EGLMTTVHA TATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLE+ A+Y+EIKAA+KAA+EG MKG L YTEDAVVSSDFI D  +SIFDATAGI L+  FVKLV+WYDNEWGYSN+V+DLI HM K
Sbjct:  158 LSKVINDNFGIAEGLMTTVHATTATQKTVDGPSKKDWRGGRGAAFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLEKPATYEEIKAAVKAAAEGEMKGILDYTEDAVVSSDFITDPHTSIFDATAGIMLSPTFVKLVAWYDNEWGYSNKVVDLIRHMAK 331
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BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Match: A0A7X8GAT5_9CLOT (Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Clostridiaceae bacterium TaxID=1898204 RepID=A0A7X8GAT5_9CLOT)

HSP 1 Score: 293 bits (750), Expect = 1.650e-90
Identity = 142/174 (81.61%), Postives = 161/174 (92.53%), Query Frame = 1 
Query:    1 LSQVINDSFGLKEGLMTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYLGYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRVLDLITHMEK 522
            +++V+ND FG+ EGLMTTVHAVTATQKTVDGPSKKDWRGGRGA FNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVP ADVSVVDLTCRLE+GA+Y+EI AAMK ASE  +KG LGYTEDAVVSSDFIGDAR+SIFDA AGI L ++F+K+V+WYDNEWGYSN+V+DL+TH+ K
Sbjct:  159 IAKVLNDKFGIIEGLMTTVHAVTATQKTVDGPSKKDWRGGRGASFNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPVADVSVVDLTCRLEKGATYEEICAAMKDASENELKGILGYTEDAVVSSDFIGDARTSIFDAKAGIPLNNNFIKVVAWYDNEWGYSNKVVDLVTHIAK 332
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig9025.17108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A6YYV8_DICDH2.740e-10191.48Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=D... [more]
Q9FVP0_ASCNO1.520e-9788.64Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=A... [more]
A0A662WN36_9STRA3.240e-9485.14Gp_dh_C domain-containing protein (Fragment) n=2 T... [more]
G3P_PHYIN1.200e-9286.29Glyceraldehyde-3-phosphate dehydrogenase n=7 Tax=P... [more]
A0A4D9DI62_9STRA2.960e-9286.21Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=M... [more]
D0NSR1_PHYIT3.480e-9285.71Glyceraldehyde-3-phosphate dehydrogenase n=25 Tax=... [more]
A0A3F2RW64_9STRA2.370e-9179.89Glyceraldehyde-3-phosphate dehydrogenase n=3 Tax=P... [more]
D7FZL5_ECTSI4.020e-9185.80Glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=E... [more]
UPI001996992B1.600e-9083.91type I glyceraldehyde-3-phosphate dehydrogenase n=... [more]
A0A7X8GAT5_9CLOT1.650e-9081.61Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig9025contigS-dermatodea_contig9025:3381..8546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score283.1
Seed ortholog evalue8.1e-74
Seed eggNOG ortholog42099.EPrPV00000020893
KEGG rclassRC00149,RC00423
KEGG koko:K00134,ko:K01803
KEGG ReactionR01015,R01061
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.Triosephosphate isomerase glyceraldehyde-3-phosphate dehydrogenase. Source PGD
EggNOG OGs1MDJJ@121069,COG0057@1,COG0149@1,KOG0657@2759,KOG1643@2759
EC1.2.1.12,5.3.1.1
COG Functional cat.G
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons4
Model size1929
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig9025.17108.1prot_S-dermatodea_contig9025.17108.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig9025 4779..8501 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.742658-UTR-S-dermatodea_contig9025:3380..47781622925380.742658-UTR-S-dermatodea_contig9025:3380..4778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9025 3381..4778 -
1694079894.6815112-UTR-S-dermatodea_contig9025:3380..47781694079894.6815112-UTR-S-dermatodea_contig9025:3380..4778Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9025 3381..4778 -
1622925380.8198478-UTR-S-dermatodea_contig9025:8501..85461622925380.8198478-UTR-S-dermatodea_contig9025:8501..8546Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9025 8502..8546 -
1694079894.7539425-UTR-S-dermatodea_contig9025:8501..85461694079894.7539425-UTR-S-dermatodea_contig9025:8501..8546Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig9025 8502..8546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925380.7568853-CDS-S-dermatodea_contig9025:4778..48331622925380.7568853-CDS-S-dermatodea_contig9025:4778..4833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 4779..4833 -
1694079894.700107-CDS-S-dermatodea_contig9025:4778..48331694079894.700107-CDS-S-dermatodea_contig9025:4778..4833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 4779..4833 -
1622925380.7676187-CDS-S-dermatodea_contig9025:6853..69841622925380.7676187-CDS-S-dermatodea_contig9025:6853..6984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 6854..6984 -
1694079894.7170153-CDS-S-dermatodea_contig9025:6853..69841694079894.7170153-CDS-S-dermatodea_contig9025:6853..6984Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 6854..6984 -
1622925380.7858326-CDS-S-dermatodea_contig9025:7622..78491622925380.7858326-CDS-S-dermatodea_contig9025:7622..7849Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 7623..7849 -
1694079894.7316718-CDS-S-dermatodea_contig9025:7622..78491694079894.7316718-CDS-S-dermatodea_contig9025:7622..7849Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 7623..7849 -
1622925380.7991867-CDS-S-dermatodea_contig9025:8428..85011622925380.7991867-CDS-S-dermatodea_contig9025:8428..8501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 8429..8501 -
1694079894.7411034-CDS-S-dermatodea_contig9025:8428..85011694079894.7411034-CDS-S-dermatodea_contig9025:8428..8501Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig9025 8429..8501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig9025.17108.1

>prot_S-dermatodea_contig9025.17108.1 ID=prot_S-dermatodea_contig9025.17108.1|Name=mRNA_S-dermatodea_contig9025.17108.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
MTTVHAVTATQKTVDGPSKKDWRGGRGAGFNIIPSSTGAAKAVGKVIPEL
NGKLTGMSFRVPTADVSVVDLTCRLERGASYDEIKAAMKAASEGSMKGYL
GYTEDAVVSSDFIGDARSSIFDATAGIALTDDFVKLVSWYDNEWGYSNRV
LDLITHMEKSS*
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mRNA from alignment at S-dermatodea_contig9025:3381..8546-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig9025.17108.1 ID=mRNA_S-dermatodea_contig9025.17108.1|Name=mRNA_S-dermatodea_contig9025.17108.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5166bp|location=Sequence derived from alignment at S-dermatodea_contig9025:3381..8546- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGTCACAGGTGATCAACGACTCTTTCGGACTCAAGGAGGGCCTGATGAC
GACGGTGCACGCCGTGACGGCCACCCAGAAGACCGTTGACGGACCCTCCA
AGAAGGACTGGAGGGGCGGTAAGCATTATTGGCGTTAGGATAGAAATTTG
TAAAATCTTAGGATCACTTTTTATTTATTTTGTTGGCACACGTATGATAG
ACTTTCTTTTCCGAGGTCCATCTGTGGTTATCACAAGGGATCATCCCATC
TCTCCCCGGTTCTCACCTTTGATTTTTATGGCGCAATGGGGTTGGCACTC
CCGCAGCTCGCCGTTTTATCGGATTTTGCTTCCTCACGCTCTCGCGCTTT
CCGCGGCGGAGGTAAACAAAATAAAAAATATCGACTCTGCCGGGATTCGA
ACCCCGGTCCTCCGCTTGCTGGGCTGTTGGTCACCAGTTCAACCACGGGG
CGCGTATTAGTTGTGCAATAATCTATAATGGTGGTGTGAAATCATCGTTC
TGTAGCAGTGCTATTGTCTTAAATAGTGTGCTTTGTGAGGCAAAAAGAAA
ACATTTTTCCAAAAGAGACAGAAGCACAGCAGAAAGTATACTCGTACATA
CAATCCATAGCTCATCGGCACATCGTGCCTCCATACAAATGATCTTCCCC
CCCCCCCCTCCCCGCTAACCGCGAACTGTCATGTCATGTCATGTCAGGGA
GAGGAGCGGGGTTCAACATCATCCCTTCCTCCACCGGAGCCGCCAAGGCC
GTCGGCAAGGTCATCCCCGAGCTTAACGGCAAGCTCACCGGGATGTCTTT
CCGAGTTCCCACCGCGGACGTGTCTGTCGTGGACCTCACGTGTCGGTTGG
AGAGGGGCGCGAGCTACGACGAGATTAAGGCGGCGATGAAGGCCGCCTCG
GAGGGGTCGATGAAGGGGTACTTGGTGAGTCGAGATGCTTTGCCGTGGCC
CGCCTACGGAAAAAGCTGGTCGGTGCGAGTAGCCTGACGAACGCCTTCCA
GGAACAAAAAAAAAAGAATTCCACTTTCGCAAAAATTAATATACCCGATT
GTGTCTATTACTCAGCAGGGTATACCCGATTTTGTTTTTCCATGTGATTA
GCGTCAGCAAATTTTGGCATCAAGGCCCTACTCGATAGACTCTAAATAAA
AAAGCGTGCAAAAATGCGTTATTAATTAACAAAGACGCTGCAAGTACCTG
ATGTTATTGTGGGCACGGCTACGTCCTGTGAGGTGTGCGTTAGCACAAAT
TACTACAATACTCTAAAAACAAAATCCTGGTAATATATACTTGATGTACC
CTTGTAAAGGAGACTGGTTCGGTCTACTCGATTATCTCATATTCTTAGAT
CACTCACTTGAGTCATCAGTCCTAGACGAGGTGGACCAAGTAACGGAGTC
TACGTGGGGGGGACTAGGTCGTCTACTCAGGTCCTTTACAACCTGATGTA
ATAACCCTATCCGCCCATAACGCCTCTTTACAACAATCCCCATAACACTC
CCCCCCCCGCCCCCCCCTCCGATACTCGATAATATCAATCGCTGCACTTG
TATGTTGTGTAGGGCTACACCGAGGACGCGGTGGTATCGTCCGACTTCAT
CGGCGACGCTCGATCTTCTATCTTCGACGCCACCGCGGGCATCGCCCTCA
CGGACGACTTCGTGAAGCTTGTGTCGTGGTACGACAACGAGTGGTGAGTC
AATTTAATTAGACATGCCCTACGGCACTCGTTTTTTTTACCTCCTTCGTG
ATATTTATATGATTTTACTGATTAATGCTGCTGTATGTCGAGACCAGGTC
TCCTGTATATACTTGCAGTAGGTAGCGACGGCTATGCATGCGCCCGCCCG
TGAGGTGTGCGTGGTCGCTGAACTCTAAAGTCAAGTTGTTTGGCGCTCAA
CACAAAAATCAAGTTGTTTGGCATGACTCAAAATCGCATACAAGTTTGTT
GGACAAAAATGGTAAAGGAAAACACGTTGAAAGCAGTATAATAAATAAAA
ATAAAAATTACGCAGCAGTGGTAGGAGAAGGGAGGGCGACGTGGGGGCTA
AGGATAGAACTATTAGGACCAAGAAAGAATATGCGCGAAAGCAAACAAGT
AAGTGTACCCAACTTGCAAGACCAGGCAGGCATACAATGCAGTAAGGTTG
ATGTAGTATATTACTATAGTTATAGAGGTGAATCAGGAATCGTATGATTA
CATGTGCCAGATTGTGTCGCGAGGTTAGTTAAGCAAAATTTGTGTAGGTT
TCCCAAAAAATCTCTACCAAGGCACGCAAAAACATTTCAGAAAAAAACGT
GGTTGATTTTTTGTCTTGCATTTGGTATTTGGGAACGGCTTTGAGAACGG
CAGCTTACGCTGCAAATATCTGTATAATACAGCTGTAGTATACATAATTT
ATACGTGTGTGACTACATCACATTTCCTTGGAGATTTCACGTACACACAC
GCCTCCTTGCGCACATGCAAATCTCCGCGCAAAATATTATGCCGGGTTTT
CGCCGGCCAGGCTGCGTTTCACAAGGATAACACCATCTGCAATTATAGTC
CCCATCCTTGCGTTTGTTTCGCGAGGGGGTGGCAAACTCGACAAACACTG
TTGACCCATTATGCCGTATCGCGACGTGATGAGGAGGGCCTCTGAATACC
ACGCGACCCCCCCCCGAGAAAACAAAAGGTTGATAATTGTAAAACGCAGA
GCGAGCGTTGGGGTACTTTTTTTTTGTGGATTGGAAATATGGCCCAAGCC
TATCACAGCTCAATGGAGGTCTACGTTATGCGTCATGCTGTGCGGTCATT
GTAAAAATGTAATGTGTCTGGGTGGAGGTGTGGCCCTACAACATACAAGT
AAAATGTGATACGACCCCCTAAAATATACCTGGTACTGATTTCGAAAACA
TGAAAGCGAGCGTTTGGCTCCCACCTTTTTAAGAAGGAAATAAAGACGGA
CAAAGCTGTTAAACACACGTATGGAGGCTTGTGTTACGTATGACGTCATG
GGTAATATGTCGTGTATGATGTTATCATATACACGGTATTAATTTTACCT
CAAACCATTTGCAGACTCGGAAATTGGATTGTCTTCGGTAAACAAACTCC
AGGATAGTATGCTTGGTCTACCTATAAACACCTAATTTCCTATGTTTTTT
TTATTATCCTTTCATTCCATGCCTTTCACATACTCTGAGCTGCTTACGGT
ACACAAGCGTCTTTTGTCATGAGCGATATCGTCGCAAGGTATCTTCGATG
TGCTTTTCCGAGCCAAGAATATGTATTTTTCTACCACATACCATAATAAT
ACTTTTGTCGTACAAGTATCGATTTTTCTCCCATGTACCGTCGTGTATAT
ATATTGTGTGCGTGCGGTGCTTTTGCGTTCGAATGGTGACCAAAGTCCCT
TTGCGGTACTTGAAGTATAGTCACGCCTACTGAATGTTAAAATATTTGGT
TACCCGGTATGTCCAATCAACCCATGGCATGCCGTTTGGCGTCGCAAACG
CAAGGGTGATGACCAGCAGCTGGTATAGTATCATCCTGGTGAAACGCAGC
CTGGCCGGCGAACCGAAAGCCCGGCATATCGCTCCGTCGCGGCATTGTTG
GGACGCGTGGTCTATGTCCGTGCGGATACCACAAGCGTTTAACATAAGCC
CCCCCCCCCCCACCCTGTGCTTGTCTTGCCGCACCGTCCTTACATCGCTT
CTCGCTTCTTCAGGGGCTACTCCAACCGAGTGCTGGACCTCATCACTCAC
ATGGAGAAGTCGTCTTAAAAAAACCACGTGGCCAAAGTTAAATGCCGTAC
CCACAATACCGTATTTCGCCTGTGACTTTGTGTCCCACTGACTAAAACAA
GTGCAAAAAGACGCGTCATTTCTCACAAGAAAGCCAACCTCCTGGGGTTA
AGTTTTTTCCCTAGGCTAACTGACGGACGGGCGGACGGACGCCGCCGTTG
TTGAACAAGTACTCGAGGGATTAGTTAGCGGCCTAGAGACAGCTCAAGGC
CATCATCCCACGAGCAACGTTTCACTAATTGGGGAAGGGCTTCGAGATGG
CGTGTCTGCAGAGAGGCGGCACAGACAAGGTTTTGCCGATGGAAGTATAG
TTCTATAGGCGGAGGATGCCTGTTGACGTTCCACGCTGTACCGACCTTGT
GGGGGAAGGACACCGCTGTTGGATCAACGGTCTAGAGACAGCTCAAGGCA
ATCCCACGAGCAATCTGTTATTCTTCGGGGACGGGCCTCGATATGGCGTG
TCGGCAGGAGAGAGGCGGTACAGGTTTTTCATTTTGCCAATCGAAGTGTA
GTTCTGTAGGCGGATGATGCCTGCTGTGCCCTTTTCACGATGTTCCGGGA
CAAAGCTCTCACATAGAGGTGCAGTTTTTGGTAACAGTTTTGTAGGGTGC
GTGTTAGCGTTTTACGGTGTAATCCTCGTCATCGTTTCGCACGGCTGTGG
TTGTGGTGGTGGGCAGGATTTTTTCAATTTTGGAGGGAGTCGAAATAATT
TGTTCTTTCTTTCTTTCTTTTTTTGGGAACACGCGTGCTGTGCTCGAAGG
AAGTACTATAGTATATTACATGCATGCATGCAAAAGGCACACGAATATAG
TCTTGAGATCTACTCGCCCCTAAAAAATGTTGATTTCAAAAACATAGAGC
GAGCGTTGGGGTCCCACCTTTTACGAACGGGAACATCGTCCAAGCTTTAT
CTTACACCTACGGAGACATCTCTTGACCGTGGCTTAATTTCTTGAAATTA
GTTATAGTGTGATTAGCCCAATGAAGTTGAGCTTGTAGGAATCACAGGCG
GGCCCGGTGTACGGAGGTCGTGTGCAATGAACGCGCTGTGGACTGCTGGT
GGGATGCACCAAGGACGCGTGCGTGTACGACCGAGCTTTCGTCTTATTCA
TGTGTACATGGGGCAATGGCAGTTGTCCTGACTTGACGCATTATTTTGTT
ATTTCTCGTCGGAGTCACCAGCGGTTCGGTTCTCAAGCGTGGTCGACTGA
TCACGCGATGAAGTGTGTCCATGTGCCTTGTGTTCAGCGACAACAAGGAA
ACACCGCAATACGTTTTCATCGCGTTGCCGGTACACACTGATCCGACTCG
CGCTCCGACAATCGTGTACACAGCTTTAATTAATAAGTCGAGTCTGGCAA
CCGTTACGCCAAAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig9025:3381..8546-

>mRNA_S-dermatodea_contig9025.17108.1 ID=mRNA_S-dermatodea_contig9025.17108.1|Name=mRNA_S-dermatodea_contig9025.17108.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig9025:3381..8546- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGACGGTGCACGCCGTGACGGCCACCCAGAAGACCGTTGACGGACC
CTCCAAGAAGGACTGGAGGGGCGATGACGACGGTGCACGCCGTGACGGCC
ACCCAGAAGACCGTTGACGGACCCTCCAAGAAGGACTGGAGGGGCGGGAG
AGGAGCGGGGTTCAACATCATCCCTTCCTCCACCGGAGCCGCCAAGGCCG
TCGGCAAGGTCATCCCCGAGCTTAACGGCAAGCTCACCGGGATGTCTTTC
CGAGTTCCCACCGCGGACGTGTCTGTCGTGGACCTCACGTGTCGGTTGGA
GAGGGGCGCGAGCTACGACGAGATTAAGGCGGCGATGAAGGCCGCCTCGG
AGGGGTCGATGAAGGGGTACTTGGGAGAGGAGCGGGGTTCAACATCATCC
CTTCCTCCACCGGAGCCGCCAAGGCCGTCGGCAAGGTCATCCCCGAGCTT
AACGGCAAGCTCACCGGGATGTCTTTCCGAGTTCCCACCGCGGACGTGTC
TGTCGTGGACCTCACGTGTCGGTTGGAGAGGGGCGCGAGCTACGACGAGA
TTAAGGCGGCGATGAAGGCCGCCTCGGAGGGGTCGATGAAGGGGTACTTG
GGCTACACCGAGGACGCGGTGGTATCGTCCGACTTCATCGGCGACGCTCG
ATCTTCTATCTTCGACGCCACCGCGGGCATCGCCCTCACGGACGACTTCG
TGAAGCTTGTGTCGTGGTACGACAACGAGTGGGCTACACCGAGGACGCGG
TGGTATCGTCCGACTTCATCGGCGACGCTCGATCTTCTATCTTCGACGCC
ACCGCGGGCATCGCCCTCACGGACGACTTCGTGAAGCTTGTGTCGTGGTA
CGACAACGAGTGGGGCTACTCCAACCGAGTGCTGGACCTCATCACTCACA
TGGAGAAGTCGTCTTAAGGGCTACTCCAACCGAGTGCTGGACCTCATCAC
TCACATGGAGAAGTCGTCTTAA
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