mRNA_S-dermatodea_contig12798.1708.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12798.1708.1
Unique NamemRNA_S-dermatodea_contig12798.1708.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12798.1708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12798contigS-dermatodea_contig12798:1958..2443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12798.1708.1prot_S-dermatodea_contig12798.1708.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12798 1973..2314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.837549-UTR-S-dermatodea_contig12798:1957..19721622924261.837549-UTR-S-dermatodea_contig12798:1957..1972Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12798 1958..1972 +
1694079133.3617666-UTR-S-dermatodea_contig12798:1957..19721694079133.3617666-UTR-S-dermatodea_contig12798:1957..1972Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12798 1958..1972 +
1622924261.8594234-UTR-S-dermatodea_contig12798:2314..24431622924261.8594234-UTR-S-dermatodea_contig12798:2314..2443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12798 2315..2443 +
1694079133.3911543-UTR-S-dermatodea_contig12798:2314..24431694079133.3911543-UTR-S-dermatodea_contig12798:2314..2443Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12798 2315..2443 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.8475456-CDS-S-dermatodea_contig12798:1972..23141622924261.8475456-CDS-S-dermatodea_contig12798:1972..2314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12798 1973..2314 +
1694079133.3709297-CDS-S-dermatodea_contig12798:1972..23141694079133.3709297-CDS-S-dermatodea_contig12798:1972..2314Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12798 1973..2314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12798.1708.1

>prot_S-dermatodea_contig12798.1708.1 ID=prot_S-dermatodea_contig12798.1708.1|Name=mRNA_S-dermatodea_contig12798.1708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MEHSPPGNKYPVPMERDHPRSRTQVVTHGEFSHTPHANPAFAKPAPRSPP
TSLVHRTPEPLGNSFRKDTHGSTRRAAERTRDFRDKDNKKSLLMCGVGVG
TTPAKTKNMMTHS*
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mRNA from alignment at S-dermatodea_contig12798:1958..2443+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12798.1708.1 ID=mRNA_S-dermatodea_contig12798.1708.1|Name=mRNA_S-dermatodea_contig12798.1708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at S-dermatodea_contig12798:1958..2443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCGCGCAATCCTGGATGGAGCACAGCCCACCGGGCAATAAATACCCTGT
GCCCATGGAACGAGACCACCCACGGTCACGGACACAAGTTGTCACACATG
GCGAATTTTCACATACGCCGCATGCAAACCCCGCGTTCGCGAAGCCTGCA
CCTCGAAGCCCGCCGACCAGCCTTGTTCACCGGACGCCGGAACCACTGGG
CAACTCCTTTCGTAAGGACACTCATGGAAGCACACGCAGGGCAGCAGAGC
GTACCCGTGATTTTCGAGACAAAGATAACAAGAAGTCGTTGCTGATGTGC
GGGGTGGGAGTGGGAACGACGCCAGCAAAAACAAAAAACATGATGACGCA
TTCTTAAAACGCAACGGCGGGCGGGCGGGCGGAAGGAGGCGAACGGCAAT
AAAAAAAATCACAATCCCACGCGTTCCTCGCACGCCGAAACAACCCGCAT
CTCCCCACCTTCCCCCGCCCCTCCCCCCATCCGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12798:1958..2443+

>mRNA_S-dermatodea_contig12798.1708.1 ID=mRNA_S-dermatodea_contig12798.1708.1|Name=mRNA_S-dermatodea_contig12798.1708.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig12798:1958..2443+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCACAGCCCACCGGGCAATAAATACCCTGTGCCCATGGAACGAGA
CCACCCACGGTCACGGACACAAGTTGTCACACATGGCGAATTTTCACATA
CGCCGCATGCAAACCCCGCGTTCGCGAAGCCTGCACCTCGAAGCCCGCCG
ACCAGCCTTGTTCACCGGACGCCGGAACCACTGGGCAACTCCTTTCGTAA
GGACACTCATGGAAGCACACGCAGGGCAGCAGAGCGTACCCGTGATTTTC
GAGACAAAGATAACAAGAAGTCGTTGCTGATGTGCGGGGTGGGAGTGGGA
ACGACGCCAGCAAAAACAAAAAACATGATGACGCATTCTTAAATGGAGCA
CAGCCCACCGGGCAATAAATACCCTGTGCCCATGGAACGAGACCACCCAC
GGTCACGGACACAAGTTGTCACACATGGCGAATTTTCACATACGCCGCAT
GCAAACCCCGCGTTCGCGAAGCCTGCACCTCGAAGCCCGCCGACCAGCCT
TGTTCACCGGACGCCGGAACCACTGGGCAACTCCTTTCGTAAGGACACTC
ATGGAAGCACACGCAGGGCAGCAGAGCGTACCCGTGATTTTCGAGACAAA
GATAACAAGAAGTCGTTGCTGATGTGCGGGGTGGGAGTGGGAACGACGCC
AGCAAAAACAAAAAACATGATGACGCATTCTTAA
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