mRNA_S-dermatodea_contig12792.1707.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE) HSP 1 Score: 288 bits (736), Expect = 3.060e-89 Identity = 184/301 (61.13%), Postives = 205/301 (68.11%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAG----------DGDADAT--------------VSGGAKDPRGEFTVVIGPRVA-VDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL-PSATKKD 825
GISDPGMELAAACAAEG+RV+PVPGACAAVAAVSVAGF SHEFVFFGFV GKRGSAVRRRKLAEIA+EPRTC+MYESPHRIADTL LL S P L S R G +REG E S+ +AAG RP++LARELTKLHE+IFRGTLAEAVARYG +G DGD + + G + PRGEFTVV+GPR A V EG G ARA+ ALE RL ELTAGGMSTSSAVKMA+KDL +KKSDVYRVAL+L PS+ +KD
Sbjct: 277 GISDPGMELAAACAAEGLRVVPVPGACAAVAAVSVAGFPSHEFVFFGFVSGKRGSAVRRRKLAEIAQEPRTCIMYESPHRIADTLGALLKASCPPPSEALDS-----------RSGTDSGGSREGN-----------ETPVSSEAWLAAGCRPVVLARELTKLHEDIFRGTLAEAVARYGGSGGVPSREGERRDGDCETSDGASGMXXXXXXXXXDGVVRGPRGEFTVVLGPRAAAVGAGEG---GEARALEALEARLTELTAGGMSTSSAVKMASKDLNLKKSDVYRVALSLQPSSVEKD 552
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI) HSP 1 Score: 281 bits (719), Expect = 1.100e-86 Identity = 182/307 (59.28%), Postives = 204/307 (66.45%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSR-----------PIILARELTKLHEEIFRGTLAEAVARYG--------------------AAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL-PSATKKD 825
GISDPGMELAAACAAEG+RV+PVPGACAAVAAVSVAGF SHEFVFFGFV GKRGSAVRRRKLAEIA+EPRTC+MYESPHRIADTL GLL S P S+ V G R G EG E S+ +AAG R P++LARELTKLHE+IFRGTLAEAVARYG A+G G G +DPRGEFTVV+GPR A + G++ G ARA+ ALE RL ELTAGGMSTSSAVKM +KDL +KKSDVYRVAL+L PS+ K+D
Sbjct: 270 GISDPGMELAAACAAEGLRVVPVPGACAAVAAVSVAGFPSHEFVFFGFVSGKRGSAVRRRKLAEIAQEPRTCIMYESPHRIADTLGGLLKASCPP-----PSEHV------GGRSGTDSGGPHEGN-----------ETTASSEAQLAAGRRGGAEGMRFFQWPVVLARELTKLHEDIFRGTLAEAVARYGGGDGVPAREGEGRDGVPSDGASGMGSGXXXGDGVVRDPRGEFTVVLGPRAAA-VGAGEE-GQARALEALEARLTELTAGGMSTSSAVKMVSKDLNLKKSDVYRVALSLRPSSVKED 552
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A835ZCH8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH8_9STRA) HSP 1 Score: 164 bits (415), Expect = 1.070e-43 Identity = 114/268 (42.54%), Postives = 145/268 (54.10%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL 804
GISDPG+ELAAACA GVRV+PVPGACAAVAAVSV+G + E+VF GF+ +RG+A R R LA +A EPR V+YE+PHR+ DTLR L + AG R A +RP + ARELTK HEE++RGT+ A+ +G + RGEFT+V+ RV + GAA A A+ RL+EL GGM+ SSAVK+ A+DLG +KS VY +A L
Sbjct: 126 GISDPGVELAAACADAGVRVVPVPGACAAVAAVSVSGLAPAEWVFVGFLPARRGAA-RARALAALAAEPRAAVLYEAPHRLLDTLRELADAAGXX-----------XXXXAGDRD--------------------------------AVLARPALFARELTKQHEELYRGTVGSALEHFGGXXXXXXXXXXTAARGAVRGEFTIVLAARVERAV------GAAEAQEAMAARLLELRRGGMTASSAVKLVARDLGARKSVVYALATQL 343
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6V1TAB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TAB6_HETAK) HSP 1 Score: 149 bits (376), Expect = 1.230e-37 Identity = 111/270 (41.11%), Postives = 141/270 (52.22%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETR-LMELTAGGMSTSSAVKMAAKDL-GMKKSDVYRVALAL 804
GI+DPG LA ACA GV IP+PG CAA AA+SVAG + E+VFFGF+ KRG+A R KL E+ E RT V YE+PHR+ TLR ++ +S+ AAG R I+ ARELTKLHE FRGT+ EA A + A G PRGEFTVV+GP + + +G+ A AAL TR L EL A G+STS AVK +++ G+KK++VY +AL L
Sbjct: 199 GIADPGTPLARACAEAGVPAIPIPGPCAAAAALSVAGVYASEYVFFGFLPAKRGTA-RTAKLREVLEERRTSVFYEAPHRLEHTLREMVEISA-----------------------------------------------------AAAGRREIVCARELTKLHESFFRGTVQEAWAHFSAPGTA------------PRGEFTVVLGP-LEEEAPDGE------AAAALATRRLRELMAEGVSTSRAVKAVVQEVKGLKKAEVYNLALEL 395
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A4D9CZ36_9STRA (TP_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ36_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.290e-36 Identity = 109/275 (39.64%), Postives = 146/275 (53.09%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDP-RGEFTVVIGPRVAVDIAEGDQQGAARAV--AALETRLMELTAGGMSTSSAVKMAAKDLG----MKKSDVYRVALAL 804
G+SDPG ELAAAC GV ++PVPGACAAVAA+S+AGF S EF F GF+ + G VR+ ++A+ ARE R C++YESP+RI TL L RE D G R +++ARELTKLHE+++RGTL EA+A +G G + +V GA P RGEFT+V+GPR V ++ + A RA+ A LE GMS S A K +K LG + KSD+Y++A+ +
Sbjct: 90 GVSDPGSELAAACWTAGVPLVPVPGACAAVAAISIAGFPSTEFTFIGFLPSRSGK-VRQAEVAKAAREERPCILYESPNRILRTLTEL----------------------------------REA--------------------DETGGGRLVLVARELTKLHEDLYRGTLTEALAHFG--GKDEQGVSVEAGAFAPLRGEFTLVLGPRPRVARSQEEVSIAVRAMLWACLEE-------DGMSASEAAKAVSKALGKEARLAKSDMYKLAVEM 300
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: W7TJ55_9STRA (Tetrapyrrole methylase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ55_9STRA) HSP 1 Score: 145 bits (366), Expect = 5.010e-36 Identity = 110/273 (40.29%), Postives = 145/273 (53.11%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDP-RGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLG----MKKSDVYRVALAL 804
G+SDPG ELAAAC GV ++PVPGACAAVAA+SVAGF S EF F GF+ + G VR+ ++A+ ARE R C++YESP+RI TL L RE D G R +++ARELTKLHE+++RGTL EA+A +G G + +V GA P RGEFT+V+GPR V A ++ + A L L E GMS S A K A+K LG + KSD+Y++A+ +
Sbjct: 222 GVSDPGSELAAACWTAGVPLVPVPGACAAVAAISVAGFPSTEFTFIGFLPSRSGK-VRQAEVAKAAREERPCILYESPNRILRTLTEL----------------------------------REA--------------------DETGGGRLVLVARELTKLHEDLYRGTLTEALAHFG--GKEEQGVSVEAGAFAPLRGEFTLVLGPRPRV--ARSQEEVSIAVQAMLRACLEE---DGMSASEAAKAASKTLGKEAGLAKSDMYKLAVEM 432
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A8J5XH93_DIALT (TP_methylase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH93_DIALT) HSP 1 Score: 129 bits (325), Expect = 1.650e-30 Identity = 107/269 (39.78%), Postives = 129/269 (47.96%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDI-AEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL 804
GISDPG LAAAC GV V+P+PGACAAVAA+SVAG + E+VFFGFV A RRR LA +A EPR CV+YE+PHR+ TL GL AG+R ++ ARELTKLHEE+FRGTL A+A Y GGA RGEFT+V+ P A+ E D A +A L E A G S+AV+ + G K +VY ALAL
Sbjct: 160 GISDPGARLAAACVEAGVPVVPLPGACAAVAALSVAG-ALGEWVFFGFVPAT--GAERRRALARVAAEPRACVLYEAPHRLLSTLSGLAARGDXXXXXXXXXXXXXXXXXX------------------------------XXXXXXXAGARGVLCARELTKLHEELFRGTLDGALAHY-----------ADGGAGVLRGEFTLVLLPDAALAARGEADADEARDRLAG--ALLAEHAAAGARLSAAVRDVCERTGAPKREVYARALAL 382
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A0M0JQE6_9EUKA (Ribosomal RNA small subunit methyltransferase i n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQE6_9EUKA) HSP 1 Score: 127 bits (318), Expect = 4.770e-30 Identity = 101/277 (36.46%), Postives = 134/277 (48.38%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAA----RAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALALPSATK 819
GISDPG+ LAA CA + ++PVPGACAAVAA+SV+GF S EF+F GF+ R + R+ ++AE+ E R V+YE+PHR+ DTL GDL G AG R +++ARE+TKLHEE RGT+A A A Y A + D RGEF VVI P A + + + + AA RA A+ RL A G + S VK AA + G+ K+ +Y AL A +
Sbjct: 115 GISDPGLALAAECARRSIPIVPVPGACAAVAAISVSGFVSTEFIFGGFL--PRSGSGRKARIAEMVGERRAVVLYEAPHRMLDTL-----------------------------------------------GDLKMAG---------AGGRGVVVAREMTKLHEEFHRGTIASAHAWYAAIAERDGKL---------RGEFAVVIAPLDAATLEQREGEAAAVAEERATEAVRARL----AAGGALSRVVKEAALEFGVPKAKLYAEALRQKEALR 320
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6M8BFW2_9CYAN (Ribosomal RNA small subunit methyltransferase I n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8BFW2_9CYAN) HSP 1 Score: 121 bits (304), Expect = 1.570e-28 Identity = 89/269 (33.09%), Postives = 123/269 (45.72%), Query Frame = 1
Query: 1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALALP 807
GISDPG EL AAC G+ V+P+PGA A V A+S AG + FVF GF+ K RR +LA + E RT V YESPHR+ TL + + G RPI+LARELTKLHEE +RGT+ EA+A + +DP+GE+TV++ +A + + AAL+ L+ L G+S S A + A+ + + D+Y++AL LP
Sbjct: 85 GISDPGYELVAACVEAGIPVVPIPGASAVVTALSAAGLPTDRFVFEGFLPAK--GKERRDRLAALQSESRTLVFYESPHRLRQTL--------------------------------------------------------TDFSETFGGDRPIVLARELTKLHEEFWRGTVQEAIAHHET--------------RDPQGEYTVLLAGSIAAPVVLSE--------AALKAELVALMQQGLSRSQASRQLAQQTQLPRRDLYQLALTLP 273
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A845U467_9BACT (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidipila sp. TaxID=1872113 RepID=A0A845U467_9BACT) HSP 1 Score: 120 bits (302), Expect = 3.800e-28 Identity = 97/265 (36.60%), Postives = 125/265 (47.17%), Query Frame = 1
Query: 4 ISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVAL 798
+SDPG L A C A G+ V+PVPG AAVAA+ AG +S EF+F GF+ + G RRR LA + E RT V YE+PHR+ADTL A A + + G RP ++ARELTKLHEE RGTLAE ARY + PRGE T++IGP E Q AA A L TR+ +L A G+ SA+K AA++ G+ + + Y+ L
Sbjct: 98 LSDPGHRLVAECIAHGIPVVPVPGPSAAVAALGAAGLASDEFLFLGFLPSRVGE--RRRALAGLRAETRTMVFYEAPHRLADTL------------------ADAAELL---------------------------------------GVRPAVVARELTKLHEEFARGTLAELAARYRE--------------RAPRGEITLLIGP-----CDEAVAQTAA-AETPLATRVEQLQAQGLDRKSALKQAARERGLNRREAYKQLL 283 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12792.1707.1 >prot_S-dermatodea_contig12792.1707.1 ID=prot_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp MELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAback to top mRNA from alignment at S-dermatodea_contig12792:331..4504+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12792.1707.1 ID=mRNA_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4174bp|location=Sequence derived from alignment at S-dermatodea_contig12792:331..4504+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12792:331..4504+ >mRNA_S-dermatodea_contig12792.1707.1 ID=mRNA_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig12792:331..4504+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |