mRNA_S-dermatodea_contig12792.1707.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12792.1707.1
Unique NamemRNA_S-dermatodea_contig12792.1707.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6H5JVG6_9PHAE (TP_methylase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVG6_9PHAE)

HSP 1 Score: 288 bits (736), Expect = 3.060e-89
Identity = 184/301 (61.13%), Postives = 205/301 (68.11%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAG----------DGDADAT--------------VSGGAKDPRGEFTVVIGPRVA-VDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL-PSATKKD 825
            GISDPGMELAAACAAEG+RV+PVPGACAAVAAVSVAGF SHEFVFFGFV GKRGSAVRRRKLAEIA+EPRTC+MYESPHRIADTL  LL  S  P    L S           R G     +REG            E   S+   +AAG RP++LARELTKLHE+IFRGTLAEAVARYG +G          DGD + +                G  + PRGEFTVV+GPR A V   EG   G ARA+ ALE RL ELTAGGMSTSSAVKMA+KDL +KKSDVYRVAL+L PS+ +KD
Sbjct:  277 GISDPGMELAAACAAEGLRVVPVPGACAAVAAVSVAGFPSHEFVFFGFVSGKRGSAVRRRKLAEIAQEPRTCIMYESPHRIADTLGALLKASCPPPSEALDS-----------RSGTDSGGSREGN-----------ETPVSSEAWLAAGCRPVVLARELTKLHEDIFRGTLAEAVARYGGSGGVPSREGERRDGDCETSDGASGMXXXXXXXXXDGVVRGPRGEFTVVLGPRAAAVGAGEG---GEARALEALEARLTELTAGGMSTSSAVKMASKDLNLKKSDVYRVALSLQPSSVEKD 552          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: D8LLL3_ECTSI (TP_methylase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL3_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.100e-86
Identity = 182/307 (59.28%), Postives = 204/307 (66.45%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSR-----------PIILARELTKLHEEIFRGTLAEAVARYG--------------------AAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL-PSATKKD 825
            GISDPGMELAAACAAEG+RV+PVPGACAAVAAVSVAGF SHEFVFFGFV GKRGSAVRRRKLAEIA+EPRTC+MYESPHRIADTL GLL  S  P      S+ V      G R G       EG            E   S+   +AAG R           P++LARELTKLHE+IFRGTLAEAVARYG                    A+G G       G  +DPRGEFTVV+GPR A  +  G++ G ARA+ ALE RL ELTAGGMSTSSAVKM +KDL +KKSDVYRVAL+L PS+ K+D
Sbjct:  270 GISDPGMELAAACAAEGLRVVPVPGACAAVAAVSVAGFPSHEFVFFGFVSGKRGSAVRRRKLAEIAQEPRTCIMYESPHRIADTLGGLLKASCPP-----PSEHV------GGRSGTDSGGPHEGN-----------ETTASSEAQLAAGRRGGAEGMRFFQWPVVLARELTKLHEDIFRGTLAEAVARYGGGDGVPAREGEGRDGVPSDGASGMGSGXXXGDGVVRDPRGEFTVVLGPRAAA-VGAGEE-GQARALEALEARLTELTAGGMSTSSAVKMVSKDLNLKKSDVYRVALSLRPSSVKED 552          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A835ZCH8_9STRA (Tetrapyrrole methylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.070e-43
Identity = 114/268 (42.54%), Postives = 145/268 (54.10%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL 804
            GISDPG+ELAAACA  GVRV+PVPGACAAVAAVSV+G +  E+VF GF+  +RG+A R R LA +A EPR  V+YE+PHR+ DTLR L   +                  AG R                                 A  +RP + ARELTK HEE++RGT+  A+  +G           +      RGEFT+V+  RV   +      GAA A  A+  RL+EL  GGM+ SSAVK+ A+DLG +KS VY +A  L
Sbjct:  126 GISDPGVELAAACADAGVRVVPVPGACAAVAAVSVSGLAPAEWVFVGFLPARRGAA-RARALAALAAEPRAAVLYEAPHRLLDTLRELADAAGXX-----------XXXXAGDRD--------------------------------AVLARPALFARELTKQHEELYRGTVGSALEHFGGXXXXXXXXXXTAARGAVRGEFTIVLAARVERAV------GAAEAQEAMAARLLELRRGGMTASSAVKLVARDLGARKSVVYALATQL 343          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6V1TAB6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TAB6_HETAK)

HSP 1 Score: 149 bits (376), Expect = 1.230e-37
Identity = 111/270 (41.11%), Postives = 141/270 (52.22%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETR-LMELTAGGMSTSSAVKMAAKDL-GMKKSDVYRVALAL 804
            GI+DPG  LA ACA  GV  IP+PG CAA AA+SVAG  + E+VFFGF+  KRG+A R  KL E+  E RT V YE+PHR+  TLR ++ +S+                                                      AAG R I+ ARELTKLHE  FRGT+ EA A + A G              PRGEFTVV+GP +  +  +G+      A AAL TR L EL A G+STS AVK   +++ G+KK++VY +AL L
Sbjct:  199 GIADPGTPLARACAEAGVPAIPIPGPCAAAAALSVAGVYASEYVFFGFLPAKRGTA-RTAKLREVLEERRTSVFYEAPHRLEHTLREMVEISA-----------------------------------------------------AAAGRREIVCARELTKLHESFFRGTVQEAWAHFSAPGTA------------PRGEFTVVLGP-LEEEAPDGE------AAAALATRRLRELMAEGVSTSRAVKAVVQEVKGLKKAEVYNLALEL 395          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A4D9CZ36_9STRA (TP_methylase domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZ36_9STRA)

HSP 1 Score: 144 bits (362), Expect = 1.290e-36
Identity = 109/275 (39.64%), Postives = 146/275 (53.09%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDP-RGEFTVVIGPRVAVDIAEGDQQGAARAV--AALETRLMELTAGGMSTSSAVKMAAKDLG----MKKSDVYRVALAL 804
            G+SDPG ELAAAC   GV ++PVPGACAAVAA+S+AGF S EF F GF+  + G  VR+ ++A+ ARE R C++YESP+RI  TL  L                                  RE                     D   G R +++ARELTKLHE+++RGTL EA+A +G  G  +   +V  GA  P RGEFT+V+GPR  V  ++ +   A RA+  A LE         GMS S A K  +K LG    + KSD+Y++A+ +
Sbjct:   90 GVSDPGSELAAACWTAGVPLVPVPGACAAVAAISIAGFPSTEFTFIGFLPSRSGK-VRQAEVAKAAREERPCILYESPNRILRTLTEL----------------------------------REA--------------------DETGGGRLVLVARELTKLHEDLYRGTLTEALAHFG--GKDEQGVSVEAGAFAPLRGEFTLVLGPRPRVARSQEEVSIAVRAMLWACLEE-------DGMSASEAAKAVSKALGKEARLAKSDMYKLAVEM 300          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: W7TJ55_9STRA (Tetrapyrrole methylase family protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ55_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.010e-36
Identity = 110/273 (40.29%), Postives = 145/273 (53.11%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDP-RGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLG----MKKSDVYRVALAL 804
            G+SDPG ELAAAC   GV ++PVPGACAAVAA+SVAGF S EF F GF+  + G  VR+ ++A+ ARE R C++YESP+RI  TL  L                                  RE                     D   G R +++ARELTKLHE+++RGTL EA+A +G  G  +   +V  GA  P RGEFT+V+GPR  V  A   ++ +    A L   L E    GMS S A K A+K LG    + KSD+Y++A+ +
Sbjct:  222 GVSDPGSELAAACWTAGVPLVPVPGACAAVAAISVAGFPSTEFTFIGFLPSRSGK-VRQAEVAKAAREERPCILYESPNRILRTLTEL----------------------------------REA--------------------DETGGGRLVLVARELTKLHEDLYRGTLTEALAHFG--GKEEQGVSVEAGAFAPLRGEFTLVLGPRPRV--ARSQEEVSIAVQAMLRACLEE---DGMSASEAAKAASKTLGKEAGLAKSDMYKLAVEM 432          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A8J5XH93_DIALT (TP_methylase domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XH93_DIALT)

HSP 1 Score: 129 bits (325), Expect = 1.650e-30
Identity = 107/269 (39.78%), Postives = 129/269 (47.96%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDI-AEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALAL 804
            GISDPG  LAAAC   GV V+P+PGACAAVAA+SVAG +  E+VFFGFV      A RRR LA +A EPR CV+YE+PHR+  TL GL                                                            AG+R ++ ARELTKLHEE+FRGTL  A+A Y             GGA   RGEFT+V+ P  A+    E D   A   +A     L E  A G   S+AV+   +  G  K +VY  ALAL
Sbjct:  160 GISDPGARLAAACVEAGVPVVPLPGACAAVAALSVAG-ALGEWVFFGFVPAT--GAERRRALARVAAEPRACVLYEAPHRLLSTLSGLAARGDXXXXXXXXXXXXXXXXXX------------------------------XXXXXXXAGARGVLCARELTKLHEELFRGTLDGALAHY-----------ADGGAGVLRGEFTLVLLPDAALAARGEADADEARDRLAG--ALLAEHAAAGARLSAAVRDVCERTGAPKREVYARALAL 382          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A0M0JQE6_9EUKA (Ribosomal RNA small subunit methyltransferase i n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JQE6_9EUKA)

HSP 1 Score: 127 bits (318), Expect = 4.770e-30
Identity = 101/277 (36.46%), Postives = 134/277 (48.38%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAA----RAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALALPSATK 819
            GISDPG+ LAA CA   + ++PVPGACAAVAA+SV+GF S EF+F GF+   R  + R+ ++AE+  E R  V+YE+PHR+ DTL                                               GDL   G         AG R +++ARE+TKLHEE  RGT+A A A Y A  + D            RGEF VVI P  A  + + + + AA    RA  A+  RL    A G + S  VK AA + G+ K+ +Y  AL    A +
Sbjct:  115 GISDPGLALAAECARRSIPIVPVPGACAAVAAISVSGFVSTEFIFGGFL--PRSGSGRKARIAEMVGERRAVVLYEAPHRMLDTL-----------------------------------------------GDLKMAG---------AGGRGVVVAREMTKLHEEFHRGTIASAHAWYAAIAERDGKL---------RGEFAVVIAPLDAATLEQREGEAAAVAEERATEAVRARL----AAGGALSRVVKEAALEFGVPKAKLYAEALRQKEALR 320          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A6M8BFW2_9CYAN (Ribosomal RNA small subunit methyltransferase I n=3 Tax=Thermoleptolyngbya TaxID=2303528 RepID=A0A6M8BFW2_9CYAN)

HSP 1 Score: 121 bits (304), Expect = 1.570e-28
Identity = 89/269 (33.09%), Postives = 123/269 (45.72%), Query Frame = 1
Query:    1 GISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVALALP 807
            GISDPG EL AAC   G+ V+P+PGA A V A+S AG  +  FVF GF+  K     RR +LA +  E RT V YESPHR+  TL                                                        +   +   G RPI+LARELTKLHEE +RGT+ EA+A +                +DP+GE+TV++   +A  +   +        AAL+  L+ L   G+S S A +  A+   + + D+Y++AL LP
Sbjct:   85 GISDPGYELVAACVEAGIPVVPIPGASAVVTALSAAGLPTDRFVFEGFLPAK--GKERRDRLAALQSESRTLVFYESPHRLRQTL--------------------------------------------------------TDFSETFGGDRPIVLARELTKLHEEFWRGTVQEAIAHHET--------------RDPQGEYTVLLAGSIAAPVVLSE--------AALKAELVALMQQGLSRSQASRQLAQQTQLPRRDLYQLALTLP 273          
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Match: A0A845U467_9BACT (Ribosomal RNA small subunit methyltransferase I n=1 Tax=Acidipila sp. TaxID=1872113 RepID=A0A845U467_9BACT)

HSP 1 Score: 120 bits (302), Expect = 3.800e-28
Identity = 97/265 (36.60%), Postives = 125/265 (47.17%), Query Frame = 1
Query:    4 ISDPGMELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSAVRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVAVDAIAGSRGGXXXXXAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIILARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVIGPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGMKKSDVYRVAL 798
            +SDPG  L A C A G+ V+PVPG  AAVAA+  AG +S EF+F GF+  + G   RRR LA +  E RT V YE+PHR+ADTL                  A A + +                                       G RP ++ARELTKLHEE  RGTLAE  ARY                + PRGE T++IGP       E   Q AA A   L TR+ +L A G+   SA+K AA++ G+ + + Y+  L
Sbjct:   98 LSDPGHRLVAECIAHGIPVVPVPGPSAAVAALGAAGLASDEFLFLGFLPSRVGE--RRRALAGLRAETRTMVFYEAPHRLADTL------------------ADAAELL---------------------------------------GVRPAVVARELTKLHEEFARGTLAELAARYRE--------------RAPRGEITLLIGP-----CDEAVAQTAA-AETPLATRVEQLQAQGLDRKSALKQAARERGLNRREAYKQLL 283          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12792.1707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JVG6_9PHAE3.060e-8961.13TP_methylase domain-containing protein n=1 Tax=Ect... [more]
D8LLL3_ECTSI1.100e-8659.28TP_methylase domain-containing protein n=1 Tax=Ect... [more]
A0A835ZCH8_9STRA1.070e-4342.54Tetrapyrrole methylase n=1 Tax=Tribonema minus Tax... [more]
A0A6V1TAB6_HETAK1.230e-3741.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A4D9CZ36_9STRA1.290e-3639.64TP_methylase domain-containing protein n=1 Tax=Nan... [more]
W7TJ55_9STRA5.010e-3640.29Tetrapyrrole methylase family protein n=2 Tax=Nann... [more]
A0A8J5XH93_DIALT1.650e-3039.78TP_methylase domain-containing protein n=1 Tax=Dia... [more]
A0A0M0JQE6_9EUKA4.770e-3036.46Ribosomal RNA small subunit methyltransferase i n=... [more]
A0A6M8BFW2_9CYAN1.570e-2833.09Ribosomal RNA small subunit methyltransferase I n=... [more]
A0A845U467_9BACT3.800e-2836.60Ribosomal RNA small subunit methyltransferase I n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12792contigS-dermatodea_contig12792:331..4504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.7
Seed ortholog evalue1.8e-70
Seed eggNOG ortholog2880.D8LLL3
KEGG koko:K07056
EggNOG free text desc.Tetrapyrrole (Corrin/Porphyrin) Methylases
EggNOG OGs2QQ7V@2759,COG0313@1
EC2.1.1.198
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons4
Model size1097
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12792.1707.1prot_S-dermatodea_contig12792.1707.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12792 349..4238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.753143-UTR-S-dermatodea_contig12792:330..3481622924261.753143-UTR-S-dermatodea_contig12792:330..348Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12792 331..348 +
1694079133.3017268-UTR-S-dermatodea_contig12792:330..3481694079133.3017268-UTR-S-dermatodea_contig12792:330..348Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12792 331..348 +
1622924261.807538-UTR-S-dermatodea_contig12792:4238..45041622924261.807538-UTR-S-dermatodea_contig12792:4238..4504Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12792 4239..4504 +
1694079133.3530903-UTR-S-dermatodea_contig12792:4238..45041694079133.3530903-UTR-S-dermatodea_contig12792:4238..4504Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12792 4239..4504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.7638953-CDS-S-dermatodea_contig12792:348..5311622924261.7638953-CDS-S-dermatodea_contig12792:348..531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 349..531 +
1694079133.3138375-CDS-S-dermatodea_contig12792:348..5311694079133.3138375-CDS-S-dermatodea_contig12792:348..531Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 349..531 +
1622924261.7732775-CDS-S-dermatodea_contig12792:1651..19051622924261.7732775-CDS-S-dermatodea_contig12792:1651..1905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 1652..1905 +
1694079133.323569-CDS-S-dermatodea_contig12792:1651..19051694079133.323569-CDS-S-dermatodea_contig12792:1651..1905Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 1652..1905 +
1622924261.7831016-CDS-S-dermatodea_contig12792:2242..24821622924261.7831016-CDS-S-dermatodea_contig12792:2242..2482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 2243..2482 +
1694079133.3315468-CDS-S-dermatodea_contig12792:2242..24821694079133.3315468-CDS-S-dermatodea_contig12792:2242..2482Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 2243..2482 +
1622924261.7936435-CDS-S-dermatodea_contig12792:4102..42381622924261.7936435-CDS-S-dermatodea_contig12792:4102..4238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 4103..4238 +
1694079133.342072-CDS-S-dermatodea_contig12792:4102..42381694079133.342072-CDS-S-dermatodea_contig12792:4102..4238Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12792 4103..4238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12792.1707.1

>prot_S-dermatodea_contig12792.1707.1 ID=prot_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=271bp
MELAAACAAEGVRVIPVPGACAAVAAVSVAGFSSHEFVFFGFVGGKRGSA
VRRRKLAEIAREPRTCVMYESPHRIADTLRGLLTVSSMPAEGGLTSQAVA
VDAIAGSRGGGGGGDAREGRGGREEEGDLTKEGGGSAVEDVAAGSRPIIL
ARELTKLHEEIFRGTLAEAVARYGAAGDGDADATVSGGAKDPRGEFTVVI
GPRVAVDIAEGDQQGAARAVAALETRLMELTAGGMSTSSAVKMAAKDLGM
KKSDVYRVALALPSATKKDR*
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mRNA from alignment at S-dermatodea_contig12792:331..4504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12792.1707.1 ID=mRNA_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4174bp|location=Sequence derived from alignment at S-dermatodea_contig12792:331..4504+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGATATCTGACCCCGGGATGGAGCTCGCAGCGGCGTGTGCGGCAGAGGG GGTTCGCGTCATTCCTGTCCCAGGGGCGTGCGCCGCCGTGGCGGCTGTGA GCGTGGCGGGCTTCTCGTCCCACGAGTTCGTGTTTTTCGGTTTCGTGGGC GGGAAGAGAGGATCGGCGGTTCGGCGACGGAAGCTGGCGGAGATCGCGCG GGTGCGAAATGTGACTGGTCTATGTCTGTTTGAATACGACATGCGTTCGA CATACGCCCCCCCTCCCCCCCCCCCCCGCCCTCTGCTCTCCGTCCTGTCA AGGGCGCGTGGTGAATGGTCTAACAGCTGAGGCATTCAAAACATGAGTAC GCCGTGTGTGTATCATACAACATGCGTTAGACATAACCCGAGACACAGAG AGAGCGTTGGGATCCTACCTTTTCAAAAGGAGATATATGTTATGAATATA TGTTATTCTTATCCCCTGAGCTAAGTTAGCGCTGACCCTGGTGTGGCAAT CAGGCGGGGTTAAGATTTTGCTTCGCACGTCTGAATGTATGTACCGTCGT AGTCAAATCCTTTGGAGTGTTGGCAGTGGGCACATCCGAAAAAAATCCGT CGCTGAAAAAACCGACGCGGAAGGCGGACGTCGAGCCCCCGGATTGTACT TTTGTACATGACCCGCCACTTGCATTTTATTTGTGTTGCTTGGGGGATGC TTCGCATTGATCGTTGAAGTTTGGAGTTAAAAGGTTTGGTTGATTGATTG ATTCGTTGATTTCCACGCGTACACATAGCCGATCGGCATATTCCGACCCG ATTTTTTGTCAGATGGGCCAATAGTGGAGGAGAAAACAATGCTACAATAC TAATTTTAAATCTTGCTGCGTATACGGCTGTACTTGGTGTTCCACATTTA AGTGGGCCTACTTGTGTGTCGAGGTTGCGAGGCTGTTCGGAGCGGATGCA CTGGTGCGGAAAGTCGATAGCTCTCCTCTGTTGCTGCCGCCCTTTCGCGA AGCGCAGGCGCGCTCTCACTCCATGTGAACGTGCTCCATTTGAACGTGCT CGAAATCGCGCGTACCGCTCCTGTAGTGTAGTGCCGTTACGAACTGCTTT TGCTTGCAATTTCTCCTCTCTTTTCAGGCACGCTCCAAAATAACCCTTTT TGTTTTCGCCCACGCACTGGCGGTATGCTGACCGGACATGACATGTAGCA CTGCGCTCCTCTGAAACCGTAATCCCCCCTACCCCACCTCTCTCCGGTAG GCACCCGTCGCTTGCTCCGCGCGCCGCTATGATAACGTGACACCCCGCTG CTGCCCCCCTGGTCTTAACAGGAGCCCCGCACTTGTGTGATGTACGAGTC TCCACACCGCATCGCTGACACTCTCCGAGGGCTCTTGACCGTTTCGTCGA TGCCAGCAGAGGGTGGGCTAACATCGCAAGCGGTCGCCGTCGATGCTATT GCGGGAAGCCGCGGCGGGGGGGGTGGGGGGGATGCACGGGAAGGGAGGGG GGGGCGGGAAGAGGAGGGGGATTTGACGAAGGAAGGGGGCGGAAGTGCGG TAGAAGACGTGGCTGCGGGTAGCAGGTGCGCCGTGTGCTCTCGAGTGTCA TATTGGGACAGGCTGGAACTGTGATGCTGTAGTCGCGTCATTTGTATATA CCGTGTTCTGCTCAAATAATGTAGTGCGGGCACAGGTTGCGTTTTTGGGC ATCTGTCCACGATCGTTGCAGCTCCGCGGTTTCATTTCGGCGGCAACACT GCCCGTGACGAACGCCCCACAGCATGCTTTATTGGTATATACATACTTAA TACACACATTATGGCAAGGGGGACTGCACCCAACACGTGCAGGCAGTGCC CGAATCTCGCCGGCGTCATAAACACAACCAACCCCGACAAACAAACACAC GCACACCAACAGGCCAATCATCCTCGCTCGCGAGCTCACTAAGCTCCACG AAGAGATATTCCGCGGCACGCTCGCCGAGGCGGTAGCGCGATACGGAGCT GCGGGGGATGGAGACGCAGACGCAACGGTATCTGGTGGCGCCAAAGACCC GAGGGGGGAGTTTACCGTGGTCATCGGCCCTCGCGTTGCGGTGGACATCG CGGAAGGTGACCAGCAAGGGGCGGCGAGGGCAGTGGCGGCACTGGAAACA AGGTGAGAGAGGAAGGATTTTGGAGGCAACTTTTGTCGCCGAGGGCGTGG GGGTGGGTCTGGGGAATACATACTGTAGCTTGGAAAATACGCTCGACGAC GTTGTGGTTGCAGATGGATCGAAGGGACACGTTAGCGGGCGGGGCCGAGC GCGAAGTGCTCTTACTCCTCATGTTATGTTGCGTGGTGGTGGGATGAAAT GGTGGGTGTTCAGGCGCGCTGGGAGATGACAAATATTATCGCGCGGGTTC GATCTTGGCTTCGACGAAAACGACGCGCCCGACGCGCTTTTCTACCCTCT GCGGGCCCGTGCTGTGCGGTCTTCCGTTGGCCGCGGGCTCTGCAAATAAC CGAGGCAGGGCGGGGGGGGGTTCTAATGTTTTTTTAAATCATTGTGTATT TTTTAGGGGGGGCGTCGTTGTAGTTTCTTACTATTCCACAATGCGTGTAC CTTACTGACAAGGACGAGCTCACTATTAATAACAAGGACGAGCAGGAGGG TTCAATCAGTAAAAATCAATGCGACAAAAAGTACGTAGTCGAGACAAAGC TTAAGCTTCTTGGCTCACCAAGCACATCAGAGTGTTCACTACCTGTGTAT TGCTCAGGACAAAGACACTTGTACAATACCATGATCCTATAGCACAATAC ATGACATGAAACCATGGCATCGTACGTAAACAAACGTAAGCTTCTGTAGG TGTATCATAGGTTGGACCCTCTTTCCTTCTTGAAAAGGTGGAACCCGCCA ACGCTCGCTCTATGTTTTTGAAATCACTTTTGTCATTATTTGGGGGGGAC AACGAAGGGTAAACGAGGCATGGGTACAAATCGTTGGCACCGCGCTATTT TTTTTCAAGTCGCCTGGAATGTCTAGATCGTTGCATATCGTGGTAAAGGT CACACGGCGAGGTCGCTCTTCGTGGGCATACGGTCCAGGCCAGAAGTTGG CAAATACTTGGACGGATAGACCTGTCCGCTATGGTCCAGGGACGCGTGAA CGATCACCGGTCTGTTTGAATTTGGGCGAACCTCGGTAACTCGTCGTCGA AGTGCACAGGAAAATGATGAGCAAGGTGGTCCTGGCTATAGCCTTGTCTT GGGTATGGCGCAAATAGTCCCACGTAACCTTCTGGAGTGTGATTTCCGTA CGAGGCAAAGACCCCACGGAGCTTTCCAAGCGACGGCTCGACGTCCTGAA AACAAAATGGGTTTCAAAGCAGCGTTGGGGTCCACGGTAAAACCCTATGG AATTTTTAAGTTATTATGTGTAATGTTAATGCTGTCATTTTGTGGGCTTC TTCTCTCTATCTGGGTGACGTCGTGACTGAAATAATCCCCCCATCACGAT CTGCGCCCCCCCACACACACACATAAGAAATGGCCTGAGAAGGCGAGAAG TGATGTAGACAAAATAGGAAAACACGTTCACGCCGCGTTTAGCAGAGTAG GAAGCAGCGGCTGGCCATCGGCGATATATCGATCCTGTGGGAACCAAACT CCGACCTCTCGAGGGCGCGTGGTCAATGGCCTAACAGCTAGGCATTCAAA ACATGAGTACCCCCCCCCCCACCCCCCCACACACACACGTTCAACCCGTG CGCTCTCGGTCGCCGTAACCAGGCTAATGGAGCTAACGGCCGGGGGCATG TCTACCTCATCCGCGGTGAAGATGGCCGCCAAGGACCTCGGCATGAAAAA GTCCGACGTCTACCGGGTAGCCTTGGCTCTTCCCTCGGCAACGAAGAAGG ACCGCTAAAATTGGCATTAATTGTACCCAAACTTTACAGAGCTGCCGCCC GAAACCCACCCACGGGGGATTGGGCTAAAATGTGGTCTCGAGTTCGTTGT GTTGGTGGGGCTGTTAAGAGGATAGAGCTATGGATGGTTTGCGTTGGATC GAGCATTGAATATAGATATATAATGGGTTCCGTTGAATCCAGCATCGCAA CTGCGTTCGCCTTCGATTGGCGGGCCACCGCTGACGAGAATTTGCAAGCT CGGCGGGCTATGGGGGGAGGCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12792:331..4504+

>mRNA_S-dermatodea_contig12792.1707.1 ID=mRNA_S-dermatodea_contig12792.1707.1|Name=mRNA_S-dermatodea_contig12792.1707.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at S-dermatodea_contig12792:331..4504+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCTCGCAGCGGCGTGTGCGGCAGAGGGGGTTCGCGTCATTCCTGT
CCCAGGGGCGTGCGCCGCCGTGGCGGCTGTGAGCGTGGCGGGCTTCTCGT
CCCACGAGTTCGTGTTTTTCGGTTTCGTGGGCGGGAAGAGAGGATCGGCG
GTTCGGCGACGGAAGCTGGCGGAGATCGCGCGGATGGAGCTCGCAGCGGC
GTGTGCGGCAGAGGGGGTTCGCGTCATTCCTGTCCCAGGGGCGTGCGCCG
CCGTGGCGGCTGTGAGCGTGGCGGGCTTCTCGTCCCACGAGTTCGTGTTT
TTCGGTTTCGTGGGCGGGAAGAGAGGATCGGCGGTTCGGCGACGGAAGCT
GGCGGAGATCGCGCGGGAGCCCCGCACTTGTGTGATGTACGAGTCTCCAC
ACCGCATCGCTGACACTCTCCGAGGGCTCTTGACCGTTTCGTCGATGCCA
GCAGAGGGTGGGCTAACATCGCAAGCGGTCGCCGTCGATGCTATTGCGGG
AAGCCGCGGCGGGGGGGGTGGGGGGGATGCACGGGAAGGGAGGGGGGGGC
GGGAAGAGGAGGGGGATTTGACGAAGGAAGGGGGCGGAAGTGCGGTAGAA
GACGTGGCTGCGGGTAGCAGGAGCCCCGCACTTGTGTGATGTACGAGTCT
CCACACCGCATCGCTGACACTCTCCGAGGGCTCTTGACCGTTTCGTCGAT
GCCAGCAGAGGGTGGGCTAACATCGCAAGCGGTCGCCGTCGATGCTATTG
CGGGAAGCCGCGGCGGGGGGGGTGGGGGGGATGCACGGGAAGGGAGGGGG
GGGCGGGAAGAGGAGGGGGATTTGACGAAGGAAGGGGGCGGAAGTGCGGT
AGAAGACGTGGCTGCGGGTAGCAGGCCAATCATCCTCGCTCGCGAGCTCA
CTAAGCTCCACGAAGAGATATTCCGCGGCACGCTCGCCGAGGCGGTAGCG
CGATACGGAGCTGCGGGGGATGGAGACGCAGACGCAACGGTATCTGGTGG
CGCCAAAGACCCGAGGGGGGAGTTTACCGTGGTCATCGGCCCTCGCGTTG
CGGTGGACATCGCGGAAGGTGACCAGCAAGGGGCGGCGAGGGCAGTGGCG
GCACTGGAAACAAGGCCAATCATCCTCGCTCGCGAGCTCACTAAGCTCCA
CGAAGAGATATTCCGCGGCACGCTCGCCGAGGCGGTAGCGCGATACGGAG
CTGCGGGGGATGGAGACGCAGACGCAACGGTATCTGGTGGCGCCAAAGAC
CCGAGGGGGGAGTTTACCGTGGTCATCGGCCCTCGCGTTGCGGTGGACAT
CGCGGAAGGTGACCAGCAAGGGGCGGCGAGGGCAGTGGCGGCACTGGAAA
CAAGGCTAATGGAGCTAACGGCCGGGGGCATGTCTACCTCATCCGCGGTG
AAGATGGCCGCCAAGGACCTCGGCATGAAAAAGTCCGACGTCTACCGGGT
AGCCTTGGCTCTTCCCTCGGCAACGAAGAAGGACCGCTAAGCTAATGGAG
CTAACGGCCGGGGGCATGTCTACCTCATCCGCGGTGAAGATGGCCGCCAA
GGACCTCGGCATGAAAAAGTCCGACGTCTACCGGGTAGCCTTGGCTCTTC
CCTCGGCAACGAAGAAGGACCGCTAA
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