mRNA_S-dermatodea_contig89899.17070.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89899.17070.1
Unique NamemRNA_S-dermatodea_contig89899.17070.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: A0A6H5JTP7_9PHAE (GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 7.030e-23
Identity = 39/49 (79.59%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 TRFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            ++FAD+GQC +L ERE NSWW+EHTRSFAMRQID +EREMGWAFWTWKL
Sbjct:  196 SKFADFGQCDHLTEREGNSWWSEHTRSFAMRQIDRYEREMGWAFWTWKL 244
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: D8LEF5_ECTSI (Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEF5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 6.980e-22
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 TRFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            ++FAD+GQC +L ERE +SWW+EHTRSFAMRQID +EREMGWAFWTWKL
Sbjct:  376 SKFADFGQCDHLAEREGSSWWSEHTRSFAMRQIDRYEREMGWAFWTWKL 424
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: A0A836CCQ8_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCQ8_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.250e-15
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   13 DYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            DYGQC ++ ER  +SWWT H RSFA RQI +FE+EMGW+FW WKL
Sbjct:  504 DYGQCNHVAERLTDSWWTSHIRSFASRQIAVFEKEMGWSFWCWKL 548
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: A0A4D9D2R7_9STRA (Cellulase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2R7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.950e-14
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    4 RFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            +F +YGQC  +  R  + WW +H RSFA RQ+D++ERE+GW+FWT+KL
Sbjct:  439 KFQNYGQCDRIARRSTDPWWKDHIRSFAHRQMDVYERELGWSFWTYKL 486
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: A0A7S2XF99_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XF99_9EUKA)

HSP 1 Score: 65.5 bits (158), Expect = 3.580e-11
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 RFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            +F D+GQCKNLKER    W T   + FA RQ  +FE+E+GW FWTWK+
Sbjct:  485 QFTDFGQCKNLKERNTPQW-TALIKDFAARQRAVFEKELGWVFWTWKV 531
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BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Match: A0A6T6YDK2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A6T6YDK2_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-8
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 RFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL 147
            +F D+GQCK+L+ R  + W T   + F+ RQ  +FE+E+GW FW WK+
Sbjct:  557 QFKDFGQCKDLESRTTDQW-TTLVKDFSRRQRAVFEKELGWIFWAWKV 603
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89899.17070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JTP7_9PHAE7.030e-2379.59GH5 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LEF5_ECTSI6.980e-2277.55Exo-1,3-beta-glucanase, family GH5 n=1 Tax=Ectocar... [more]
A0A836CCQ8_9STRA2.250e-1566.67Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A4D9D2R7_9STRA6.950e-1454.17Cellulase domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2XF99_9EUKA3.580e-1156.25Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A6T6YDK2_9EUKA2.550e-845.83Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89899contigS-dermatodea_contig89899:144..290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue4.3e-18
Seed eggNOG ortholog2880.D8LEF5
EggNOG OGs2CIRD@1,2S847@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionExo-1,3-beta-glucanase, family GH5
Ec32 orthologEc-00_002090.1
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925377.0172627-CDS-S-dermatodea_contig89899:143..2901622925377.0172627-CDS-S-dermatodea_contig89899:143..290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89899 144..290 +
1694079891.8771455-CDS-S-dermatodea_contig89899:143..2901694079891.8771455-CDS-S-dermatodea_contig89899:143..290Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89899 144..290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89899.17070.1prot_S-dermatodea_contig89899.17070.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89899 144..290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89899.17070.1

>prot_S-dermatodea_contig89899.17070.1 ID=prot_S-dermatodea_contig89899.17070.1|Name=mRNA_S-dermatodea_contig89899.17070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
TRFADYGQCKNLKEREANSWWTEHTRSFAMRQIDMFEREMGWAFWTWKL
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mRNA from alignment at S-dermatodea_contig89899:144..290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89899.17070.1 ID=mRNA_S-dermatodea_contig89899.17070.1|Name=mRNA_S-dermatodea_contig89899.17070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at S-dermatodea_contig89899:144..290+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAAGGTTTGCCGACTATGGGCAGTGCAAGAACCTCAAGGAACGCGAGGC
TAACAGCTGGTGGACGGAGCACACACGCTCGTTCGCCATGAGGCAGATTG
ACATGTTTGAGCGCGAGATGGGATGGGCATTCTGGACGTGGAAGCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig89899:144..290+

>mRNA_S-dermatodea_contig89899.17070.1 ID=mRNA_S-dermatodea_contig89899.17070.1|Name=mRNA_S-dermatodea_contig89899.17070.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig89899:144..290+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACAAGGTTTGCCGACTATGGGCAGTGCAAGAACCTCAAGGAACGCGAGGC
TAACAGCTGGTGGACGGAGCACACACGCTCGTTCGCCATGAGGCAGATTG
ACATGTTTGAGCGCGAGATGGGATGGGCATTCTGGACGTGGAAGCTGACA
AGGTTTGCCGACTATGGGCAGTGCAAGAACCTCAAGGAACGCGAGGCTAA
CAGCTGGTGGACGGAGCACACACGCTCGTTCGCCATGAGGCAGATTGACA
TGTTTGAGCGCGAGATGGGATGGGCATTCTGGACGTGGAAGCTG
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