mRNA_S-dermatodea_contig8983.17063.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8983.17063.1
Unique NamemRNA_S-dermatodea_contig8983.17063.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8983.17063.1 vs. uniprot
Match: A0A6H5KAZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ5_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 7.770e-52
Identity = 149/360 (41.39%), Postives = 182/360 (50.56%), Query Frame = 1 
Query:  322 EADRCRASLLTGYVPPAAYTHVNVPVLMQQTSAAIVRWGDLQKTLNVASDSATANLAAQTQVRASLKRDLTNLTQLADAQTKHIQRTKMRQMQEMQQTTKAP----------AQGA--FPGGVTATPSSLAGGTTPTGSVGLTREGYGY--PSKPQPELNPPSVPVVSMRGAQMPPPSHAPNAS---------IGAVLMQHVAGGAGAGAAHGSLPAARTDNPVEEQRAEWRQSEWPSGTSSPRPPVQSTSAPPTVPPQHAMPLQHRLHDVKQQLDRTEPRNKWVVLLHAALQLPPHEGQTYEQFFRTIQGLLNTYNGAVGAEVAQALRTCLDPRVFDPMDIKRSQDRMADVYYQWARHG 1332
            +AD+  + LL+ YVPPA    VNVPVL+QQT+ AIVRW +LQK L+V SDSA+ANLAAQ  VR+SLKRDLTNL QLADAQTKH Q+ K RQMQ MQ                AQG    PGG          G     +   T E Y    P + Q                         NAS          GA+LMQ      GAG                                          APP+          +R   ++Q++DRTEP NKWVVL+ A+L+LPP +G T+E F   IQ  LN YNG VGAEVA+AL +CLDPRVFDP DIKR+Q+RMAD+  ++ +HG
Sbjct:   59 DADQRPSPLLSDYVPPAGLALVNVPVLLQQTACAIVRWEELQKNLDVRSDSASANLAAQAHVRSSLKRDLTNLIQLADAQTKHTQKMKFRQMQAMQXXXXXXXXXXXXXXXXAQGVQPLPGGRNPARGGTGAGLDSARAGVATGEAYDEFPPKRKQVXXXXXXXXXXXXXXXXXXXXXXXXNASSYAASNSGPTGAMLMQQ-----GAGXXXXXXXXXXXXXXXX------------------------XXAPPS----------NRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADICSRF-QHG 378
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BLAST of mRNA_S-dermatodea_contig8983.17063.1 vs. uniprot
Match: D8LB93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB93_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.670e-27
Identity = 57/92 (61.96%), Postives = 72/92 (78.26%), Query Frame = 1 
Query: 1033 AMPLQHRLHDVKQQLDRTEPRNKWVVLLHAALQLPPHEGQTYEQFFRTIQGLLNTYNGAVGAEVAQALRTCLDPRVFDPMDIKRSQDRMADV 1308
            A P  +R   ++Q++DRTEP NKWVVL+ A+L+LPP +G T+E F   IQ  LN YNG VGAEVA+AL +CLDPRVFDP DIKR+Q+RMAD+
Sbjct:  132 APPPSNRHEGIRQRIDRTEPANKWVVLVDASLRLPPGDGTTFEHFTCMIQNFLNNYNGDVGAEVARALGSCLDPRVFDPTDIKRAQERMADI 223
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8983.17063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAZ5_9PHAE7.770e-5241.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB93_ECTSI2.670e-2761.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8983contigS-dermatodea_contig8983:5569..8227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_004740.1
Exons2
Model size2032
Cds size1284
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8983.17063.1prot_S-dermatodea_contig8983.17063.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8983 6260..8170 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.5442035-UTR-S-dermatodea_contig8983:5568..62591622925376.5442035-UTR-S-dermatodea_contig8983:5568..6259Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 5569..6259 -
1694079891.5690632-UTR-S-dermatodea_contig8983:5568..62591694079891.5690632-UTR-S-dermatodea_contig8983:5568..6259Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 5569..6259 -
1622925376.5775905-UTR-S-dermatodea_contig8983:8170..82271622925376.5775905-UTR-S-dermatodea_contig8983:8170..8227Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 8171..8227 -
1694079891.6007228-UTR-S-dermatodea_contig8983:8170..82271694079891.6007228-UTR-S-dermatodea_contig8983:8170..8227Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 8171..8227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.5573997-CDS-S-dermatodea_contig8983:6259..72941622925376.5573997-CDS-S-dermatodea_contig8983:6259..7294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 6260..7294 -
1694079891.5804188-CDS-S-dermatodea_contig8983:6259..72941694079891.5804188-CDS-S-dermatodea_contig8983:6259..7294Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 6260..7294 -
1622925376.5671337-CDS-S-dermatodea_contig8983:7921..81701622925376.5671337-CDS-S-dermatodea_contig8983:7921..8170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 7922..8170 -
1694079891.589215-CDS-S-dermatodea_contig8983:7921..81701694079891.589215-CDS-S-dermatodea_contig8983:7921..8170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 7922..8170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8983.17063.1

>prot_S-dermatodea_contig8983.17063.1 ID=prot_S-dermatodea_contig8983.17063.1|Name=mRNA_S-dermatodea_contig8983.17063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=428bp
MELQRHESEQDPQQQAEGALREIDLGIEQRNQPPGQQQQQQQPQPQHQHH
HLKQPWQPQGQPEVVKHRRQQQPQQSQQPQQPQAQTRAEADRCRASLLTG
YVPPAAYTHVNVPVLMQQTSAAIVRWGDLQKTLNVASDSATANLAAQTQV
RASLKRDLTNLTQLADAQTKHIQRTKMRQMQEMQQTTKAPAQGAFPGGVT
ATPSSLAGGTTPTGSVGLTREGYGYPSKPQPELNPPSVPVVSMRGAQMPP
PSHAPNASIGAVLMQHVAGGAGAGAAHGSLPAARTDNPVEEQRAEWRQSE
WPSGTSSPRPPVQSTSAPPTVPPQHAMPLQHRLHDVKQQLDRTEPRNKWV
VLLHAALQLPPHEGQTYEQFFRTIQGLLNTYNGAVGAEVAQALRTCLDPR
VFDPMDIKRSQDRMADVYYQWARHGQR*
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mRNA from alignment at S-dermatodea_contig8983:5569..8227-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8983.17063.1 ID=mRNA_S-dermatodea_contig8983.17063.1|Name=mRNA_S-dermatodea_contig8983.17063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2659bp|location=Sequence derived from alignment at S-dermatodea_contig8983:5569..8227- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGACCCTGCAACAGCTACGACAGGCGCAGGCGCAGATAGAACCTCAGCA
CCCCCAGATGGAGCTTCAGCGGCATGAATCAGAGCAAGATCCGCAGCAGC
AAGCTGAGGGAGCGTTGCGCGAGATCGACCTAGGCATCGAGCAGCGTAAT
CAACCGCCAGGGCAGCAGCAGCAACAGCAGCAGCCGCAGCCGCAGCACCA
ACACCACCATTTGAAGCAGCCTTGGCAGCCGCAAGGCCAGCCCGAAGTCG
TGAAACATCGGCGGCAGCAGCAGCCGCAGCAGTCACAGCAGCCGCAGCAG
CCGCAGGCGAGGCAGACCGCTTCTGAATTGCGTATAGTCTTAATTCAGGC
GCGGCGAATCGCACGTGCGCCCGATCCGATAAGATAACGCATTTATTTGA
CGCTTCTAATTCCGCGAAAATAACAGCGATGTGCTGGTCAAGCCGTGTTA
TGTGTTGTGCGTACCGCGAAACTGATGTACATGGTATGGACATTGAGGAT
TGGTGCTTCGTTTTTCTCGTATTATCGTTTATCCGAACTGGCGTTATGGA
ATGGTTTCCCAGTTTTTGGCTTCGATCTTACTATATTAGAGAAACGATAT
ATTCCAACTTTGCCACCTTTGCCGTAAATAGCTATTAATAATAGCCGAAG
ATCACGTGACAGCAGTAGGAGTACTGTAGTGAAAATATGCGGGAATCTAC
AGTACGAGTGGGCGGAGCTTTCGCCAAACATCTTTACAAGGGTACTTTTC
TGTTTTTCTGTAGTTGGGCGATTGATGTTTCTTTTAGACATGGGGAAACC
CGTTGGAAGATGGCAGTCATGTACGGCATTGGTCTTTTTCCCAGCGCTCT
CGCTATTACCTAGGTCTGCAACGTTCAAGTTGCTACCGCGCACCTCTTCC
CGCCACGCTCTCTGCTTTATCTTGCATGATCAGGCACAGACACGGGCGGA
GGCAGATCGTTGCAGAGCCTCTTTGCTGACTGGATACGTGCCGCCCGCAG
CGTATACGCACGTTAACGTGCCTGTCCTGATGCAACAGACTTCCGCCGCG
ATAGTCCGGTGGGGAGACCTCCAGAAAACCCTTAACGTGGCATCAGACTC
GGCGACGGCGAATCTCGCGGCGCAGACGCAAGTCAGGGCGTCCCTGAAGC
GGGACTTGACGAACCTGACTCAGCTTGCGGACGCCCAAACGAAACACATC
CAGAGGACCAAGATGCGACAGATGCAGGAAATGCAGCAGACTACGAAAGC
TCCCGCACAGGGAGCGTTTCCTGGCGGGGTGACGGCAACACCATCGTCCT
TGGCGGGCGGGACGACCCCGACGGGTTCCGTAGGTTTGACGCGGGAAGGT
TACGGCTATCCGTCGAAGCCGCAGCCGGAGCTTAACCCGCCAAGCGTCCC
CGTCGTATCGATGCGTGGCGCTCAGATGCCCCCTCCCTCTCACGCCCCCA
ATGCTTCGATCGGTGCGGTGCTGATGCAACATGTCGCCGGAGGGGCAGGG
GCGGGGGCGGCGCACGGTTCGTTACCCGCGGCTAGGACGGATAACCCGGT
AGAAGAGCAACGCGCGGAATGGCGCCAGTCCGAATGGCCATCGGGTACTT
CGTCCCCGCGGCCTCCCGTTCAGTCGACGTCGGCGCCTCCGACAGTACCT
CCGCAGCACGCCATGCCTCTGCAGCACCGCCTGCACGACGTGAAGCAGCA
GCTGGATCGCACCGAGCCACGGAACAAGTGGGTCGTTTTGCTCCACGCCG
CTCTCCAACTTCCCCCCCACGAAGGCCAGACGTACGAGCAGTTCTTCAGG
ACGATTCAAGGTCTACTCAACACGTACAATGGAGCTGTCGGCGCCGAGGT
CGCTCAGGCCCTGCGGACTTGCCTGGATCCGCGTGTGTTCGATCCCATGG
ACATCAAGCGCTCGCAGGACCGGATGGCGGACGTTTACTATCAGTGGGCT
AGACACGGTCAACGATGAGCTTGCCTAGCTCGTCTCGTTTGTGATATTTT
TGCCGATTTAAGGCAACGCCGAGGCTGGGCGTGTCCAGCAAACCAAAATA
GGCCGGAACAACTGGGTACTCACGGTCGGTTATTGTCGGGTAGTCTAGTC
CACGGCTTGCATGCTTTATAGAAGATTTTCAAGTTGTATGGTGCTGTGCT
TAGGGCAGTTTGGAGGAGGTCGCTTGCCGATATGCTTGTATCTGTGCTGC
CGGGCGCTGCGTAACTTCGGCGTTGGTAGCTGCAGAGCCTAGCAGCGAAG
TAATGATTGCTGTGAGACGTCAGTAGATAGGGAAGCGCGTTATGTGTTAC
ACACAAGGCCCCAATATATATGATATAGTACTTAGTTCGTTGATGTGATA
CTACGGGGCGTTTTTGTCTTACTCTAGGTAGGCCTGTGAACCCACGCCTG
AGGTTCTACAACATGAAAAGGACCAAAGTGTCAGTGAAGTAATTGCCCAA
CCAGATTAAATTTATTCCTGTTTGGAGAAATAAATGAGGGTGCAATTCTT
TGAAAGAGGGGTTGGAAGGCTTCGCCTCTTCTTGCTTGCAGTCACGTCTA
GTGTACAAAGTAAGAACCCGAATGGTTGTACACTCGTTGAAGCAACGCGG
CTGGGAAATGAGCTGGCGCCCTGTACAAGAGAATGTAATGTACAAGTAAA
TCAAACATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8983:5569..8227-

>mRNA_S-dermatodea_contig8983.17063.1 ID=mRNA_S-dermatodea_contig8983.17063.1|Name=mRNA_S-dermatodea_contig8983.17063.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2568bp|location=Sequence derived from alignment at S-dermatodea_contig8983:5569..8227- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCTTCAGCGGCATGAATCAGAGCAAGATCCGCAGCAGCAAGCTGA
GGGAGCGTTGCGCGAGATCGACCTAGGCATCGAGCAGCGTAATCAACCGC
CAGGGCAGCAGCAGCAACAGCAGCAGCCGCAGCCGCAGCACCAACACCAC
CATTTGAAGCAGCCTTGGCAGCCGCAAGGCCAGCCCGAAGTCGTGAAACA
TCGGCGGCAGCAGCAGCCGCAGCAGTCACAGCAGCCGCAGCAGCCGCAGA
TGGAGCTTCAGCGGCATGAATCAGAGCAAGATCCGCAGCAGCAAGCTGAG
GGAGCGTTGCGCGAGATCGACCTAGGCATCGAGCAGCGTAATCAACCGCC
AGGGCAGCAGCAGCAACAGCAGCAGCCGCAGCCGCAGCACCAACACCACC
ATTTGAAGCAGCCTTGGCAGCCGCAAGGCCAGCCCGAAGTCGTGAAACAT
CGGCGGCAGCAGCAGCCGCAGCAGTCACAGCAGCCGCAGCAGCCGCAGGC
ACAGACACGGGCGGAGGCAGATCGTTGCAGAGCCTCTTTGCTGACTGGAT
ACGTGCCGCCCGCAGCGTATACGCACGTTAACGTGCCTGTCCTGATGCAA
CAGACTTCCGCCGCGATAGTCCGGTGGGGAGACCTCCAGAAAACCCTTAA
CGTGGCATCAGACTCGGCGACGGCGAATCTCGCGGCGCAGACGCAAGTCA
GGGCGTCCCTGAAGCGGGACTTGACGAACCTGACTCAGCTTGCGGACGCC
CAAACGAAACACATCCAGAGGACCAAGATGCGACAGATGCAGGAAATGCA
GCAGACTACGAAAGCTCCCGCACAGGGAGCGTTTCCTGGCGGGGTGACGG
CAACACCATCGTCCTTGGCGGGCGGGACGACCCCGACGGGTTCCGTAGGT
TTGACGCGGGAAGGTTACGGCTATCCGTCGAAGCCGCAGCCGGAGCTTAA
CCCGCCAAGCGTCCCCGTCGTATCGATGCGTGGCGCTCAGATGCCCCCTC
CCTCTCACGCCCCCAATGCTTCGATCGGTGCGGTGCTGATGCAACATGTC
GCCGGAGGGGCAGGGGCGGGGGCGGCGCACGGTTCGTTACCCGCGGCTAG
GACGGATAACCCGGTAGAAGAGCAACGCGCGGAATGGCGCCAGTCCGAAT
GGCCATCGGGTACTTCGTCCCCGCGGCCTCCCGTTCAGTCGACGTCGGCG
CCTCCGACAGTACCTCCGCAGCACGCCATGCCTCTGCAGCACCGCCTGCA
CGACGTGAAGCAGCAGCTGGATCGCACCGAGCCACGGAACAAGTGGGTCG
TTTTGCTCCACGCCGCTCTCCAACTTCCCCCCCACGAAGGCCAGACGTAC
GAGCAGTTCTTCAGGACGATTCAAGGTCTACTCAACACGTACAATGGAGC
TGTCGGCGCCGAGGTCGCTCAGGCCCTGCGGACTTGCCTGGATCCGCGTG
TGTTCGATCCCATGGACATCAAGCGCTCGCAGGACCGGATGGCGGACGTT
TACTATCAGTGGGCTAGACACGGTCAACGATGAGCACAGACACGGGCGGA
GGCAGATCGTTGCAGAGCCTCTTTGCTGACTGGATACGTGCCGCCCGCAG
CGTATACGCACGTTAACGTGCCTGTCCTGATGCAACAGACTTCCGCCGCG
ATAGTCCGGTGGGGAGACCTCCAGAAAACCCTTAACGTGGCATCAGACTC
GGCGACGGCGAATCTCGCGGCGCAGACGCAAGTCAGGGCGTCCCTGAAGC
GGGACTTGACGAACCTGACTCAGCTTGCGGACGCCCAAACGAAACACATC
CAGAGGACCAAGATGCGACAGATGCAGGAAATGCAGCAGACTACGAAAGC
TCCCGCACAGGGAGCGTTTCCTGGCGGGGTGACGGCAACACCATCGTCCT
TGGCGGGCGGGACGACCCCGACGGGTTCCGTAGGTTTGACGCGGGAAGGT
TACGGCTATCCGTCGAAGCCGCAGCCGGAGCTTAACCCGCCAAGCGTCCC
CGTCGTATCGATGCGTGGCGCTCAGATGCCCCCTCCCTCTCACGCCCCCA
ATGCTTCGATCGGTGCGGTGCTGATGCAACATGTCGCCGGAGGGGCAGGG
GCGGGGGCGGCGCACGGTTCGTTACCCGCGGCTAGGACGGATAACCCGGT
AGAAGAGCAACGCGCGGAATGGCGCCAGTCCGAATGGCCATCGGGTACTT
CGTCCCCGCGGCCTCCCGTTCAGTCGACGTCGGCGCCTCCGACAGTACCT
CCGCAGCACGCCATGCCTCTGCAGCACCGCCTGCACGACGTGAAGCAGCA
GCTGGATCGCACCGAGCCACGGAACAAGTGGGTCGTTTTGCTCCACGCCG
CTCTCCAACTTCCCCCCCACGAAGGCCAGACGTACGAGCAGTTCTTCAGG
ACGATTCAAGGTCTACTCAACACGTACAATGGAGCTGTCGGCGCCGAGGT
CGCTCAGGCCCTGCGGACTTGCCTGGATCCGCGTGTGTTCGATCCCATGG
ACATCAAGCGCTCGCAGGACCGGATGGCGGACGTTTACTATCAGTGGGCT
AGACACGGTCAACGATGA
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