mRNA_S-dermatodea_contig8983.17062.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8983.17062.1
Unique NamemRNA_S-dermatodea_contig8983.17062.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8983.17062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8983contigS-dermatodea_contig8983:2079..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size301
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8983.17062.1prot_S-dermatodea_contig8983.17062.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8983 2145..2973 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.4677243-UTR-S-dermatodea_contig8983:2078..21441622925376.4677243-UTR-S-dermatodea_contig8983:2078..2144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 2079..2144 +
1694079891.526725-UTR-S-dermatodea_contig8983:2078..21441694079891.526725-UTR-S-dermatodea_contig8983:2078..2144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 2079..2144 +
1622925376.5052152-UTR-S-dermatodea_contig8983:2973..30311622925376.5052152-UTR-S-dermatodea_contig8983:2973..3031Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 2974..3031 +
1694079891.5584753-UTR-S-dermatodea_contig8983:2973..30311694079891.5584753-UTR-S-dermatodea_contig8983:2973..3031Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8983 2974..3031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925376.477516-CDS-S-dermatodea_contig8983:2144..21511622925376.477516-CDS-S-dermatodea_contig8983:2144..2151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 2145..2151 +
1694079891.53648-CDS-S-dermatodea_contig8983:2144..21511694079891.53648-CDS-S-dermatodea_contig8983:2144..2151Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 2145..2151 +
1622925376.4903934-CDS-S-dermatodea_contig8983:2803..29731622925376.4903934-CDS-S-dermatodea_contig8983:2803..2973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 2804..2973 +
1694079891.5475612-CDS-S-dermatodea_contig8983:2803..29731694079891.5475612-CDS-S-dermatodea_contig8983:2803..2973Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8983 2804..2973 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8983.17062.1

>prot_S-dermatodea_contig8983.17062.1 ID=prot_S-dermatodea_contig8983.17062.1|Name=mRNA_S-dermatodea_contig8983.17062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=59bp
MTGILARATHTQPPREHHASARRKMVAEGEREGAREKDEGSRHLWMGHPH
KIWTPALQ*
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mRNA from alignment at S-dermatodea_contig8983:2079..3031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8983.17062.1 ID=mRNA_S-dermatodea_contig8983.17062.1|Name=mRNA_S-dermatodea_contig8983.17062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=953bp|location=Sequence derived from alignment at S-dermatodea_contig8983:2079..3031+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGTGCGGCGGTGCGCGGCTGTTGAGGCTTTTTCGGAGATTGGCTTCATC
GTCAACGCCACCGGTTATGACAGGTGACTCAAAGAGGAGCCCCATGAAAT
ATATATAGCATCACCGGGTCCATGGAACAATTGGATTTTGAGAAGACACG
GCTCTTTGCCCTGTCCTGCACATCCCTGGCAACAACCTGCCTCTCATCAA
CCCATCAGCGCAGAGAGGACCAGAGAAAACACACGGGTGGGGGGCGCGAG
CAACATCCTTAGCCAGTTCTGCGCGCGCGCGCACCGATATAACCGGCCTG
AGACCTCACGGGTAGGTTTATCGGTCTTGAACTTATAATGGTCTCTCTCT
CGCTGCTCGACCCCTCCGTCGCAGATCAAAATATAATTGGTGTTTCTTCT
TCCTTCATCATTGTTTTTGTTTGAACCAGTGTGCTTGAGAGTTAGGGATG
TACATGGGAACTAGATTTTGTTTTTTATAAATCATACCAGTATTATTAAG
GGAGACAAGATGCACATTTTTTTATATGTTTTTTTTTTTTTCGTTGCATG
ATGTGATTGATTGATGGATGAAGCCAAAGCCAAAACAAAGCAAGAGAAAG
AAGGAAGAGAATACTGATCTTACATCGCAACACAACATTGATTGACAGAG
CAGTACAACACAACACAAACGCCAAAAATGGAAGCAGCTGCTCTCTTCAC
GCTGGTGCCTCGACACACGCCGCAGGGATCTTGGCACGCGCGACCCACAC
TCAACCTCCCCGAGAGCACCACGCGTCGGCGAGACGCAAAATGGTTGCCG
AGGGGGAGAGGGAGGGAGCGAGGGAGAAGGATGAAGGCAGCAGACACTTA
TGGATGGGTCACCCACACAAGATCTGGACACCTGCTCTACAATAACAACA
CAACCGAGTGCTTTCGCTTACCTCCGGGCAGAGAGACCGCAGAGCTCGCG
TCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8983:2079..3031+

>mRNA_S-dermatodea_contig8983.17062.1 ID=mRNA_S-dermatodea_contig8983.17062.1|Name=mRNA_S-dermatodea_contig8983.17062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at S-dermatodea_contig8983:2079..3031+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACAGATGACAGGGATCTTGGCACGCGCGACCCACACTCAACCTCCCC
GAGAGCACCACGCGTCGGCGAGACGCAAAATGGTTGCCGAGGGGGAGAGG
GAGGGAGCGAGGGAGAAGGATGAAGGCAGCAGACACTTATGGATGGGTCA
CCCACACAAGATCTGGACACCTGCTCTACAATAAGGATCTTGGCACGCGC
GACCCACACTCAACCTCCCCGAGAGCACCACGCGTCGGCGAGACGCAAAA
TGGTTGCCGAGGGGGAGAGGGAGGGAGCGAGGGAGAAGGATGAAGGCAGC
AGACACTTATGGATGGGTCACCCACACAAGATCTGGACACCTGCTCTACA
ATAA
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