mRNA_S-dermatodea_contig8957.17042.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8957.17042.1
Unique NamemRNA_S-dermatodea_contig8957.17042.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8957.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8957contigS-dermatodea_contig8957:7880..8553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size676
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.8454547-UTR-S-dermatodea_contig8957:7879..80311622925374.8454547-UTR-S-dermatodea_contig8957:7879..8031Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8957 7880..8031 +
1694079890.386608-UTR-S-dermatodea_contig8957:7879..80311694079890.386608-UTR-S-dermatodea_contig8957:7879..8031Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8957 7880..8031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925374.8622158-CDS-S-dermatodea_contig8957:8031..85531622925374.8622158-CDS-S-dermatodea_contig8957:8031..8553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8957 8032..8553 +
1694079890.3946548-CDS-S-dermatodea_contig8957:8031..85531694079890.3946548-CDS-S-dermatodea_contig8957:8031..8553Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8957 8032..8553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8957.17042.1prot_S-dermatodea_contig8957.17042.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8957 8032..8553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8957.17042.1

>prot_S-dermatodea_contig8957.17042.1 ID=prot_S-dermatodea_contig8957.17042.1|Name=mRNA_S-dermatodea_contig8957.17042.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=174bp
MHALPPARAIKHMNLSIETQTLITVRHALRQPSHCNAHVTCLIWPAPTWP
PVTSTATHNNVVVVVVVVVVVGTHIIDLLFRGRSVVTRDHSISPSLSPLI
FIAHWVRYSHRSLISRIFLLAHALALSTAEVEKINKYRLCRDLKPGPPPT
GLLVNQFNHGARGHTKIYSWYILR
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mRNA from alignment at S-dermatodea_contig8957:7880..8553+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8957.17042.1 ID=mRNA_S-dermatodea_contig8957.17042.1|Name=mRNA_S-dermatodea_contig8957.17042.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=674bp|location=Sequence derived from alignment at S-dermatodea_contig8957:7880..8553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGCCCACGTCTCGACGGACACGACCTCGGCGCAAGCCCCACACCGCA
CGAACACTGTGCGAGCCGCCGCAGTTGCTGACAGGGTGATAGAAACCTCG
ACTTCTTGACATGATATGAATAGTACGAAACCTTAACCTTCATACGAGTG
CCATGCATGCTCTCCCTCCAGCACGTGCTATCAAGCATATGAACCTTTCC
ATCGAAACCCAAACACTAATAACAGTACGCCATGCGCTTAGGCAGCCATC
GCATTGCAACGCACACGTTACGTGTTTGATATGGCCAGCCCCTACATGGC
CCCCTGTCACCTCCACCGCAACACACAACAACGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGGCACACATATTATAGACTTGCTTTTCCGAGGTCG
GTCTGTGGTCACAAGGGATCATTCCATCTCTCCCTCCCTCTCACCTTTGA
TTTTTATCGCGCATTGGGTTCGGTACTCCCACAGGTCGCTGATTTCTCGG
ATTTTTTTGCTTGCTCACGCTCTCGCGCTATCCACGGCGGAGGTAGAGAA
AATAAATAAATATCGACTCTGCCGGGATTTGAAACCGGGTCCTCCGCCTA
CTGGGCTGTTGGTCAACCAGTTCAACCACGGGGCGCGCGGTCACACAAAA
ATATATTCCTGGTATATACTTCGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8957:7880..8553+

>mRNA_S-dermatodea_contig8957.17042.1 ID=mRNA_S-dermatodea_contig8957.17042.1|Name=mRNA_S-dermatodea_contig8957.17042.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at S-dermatodea_contig8957:7880..8553+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCATGCTCTCCCTCCAGCACGTGCTATCAAGCATATGAACCTTTCCAT
CGAAACCCAAACACTAATAACAGTACGCCATGCGCTTAGGCAGCCATCGC
ATTGCAACGCACACGTTACGTGTTTGATATGGCCAGCCCCTACATGGCCC
CCTGTCACCTCCACCGCAACACACAACAACGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGGCACACATATTATAGACTTGCTTTTCCGAGGTCGGT
CTGTGGTCACAAGGGATCATTCCATCTCTCCCTCCCTCTCACCTTTGATT
TTTATCGCGCATTGGGTTCGGTACTCCCACAGGTCGCTGATTTCTCGGAT
TTTTTTGCTTGCTCACGCTCTCGCGCTATCCACGGCGGAGGTAGAGAAAA
TAAATAAATATCGACTCTGCCGGGATTTGAAACCGGGTCCTCCGCCTACT
GGGCTGTTGGTCAACCAGTTCAACCACGGGGCGCGCGGTCACACAAAAAT
ATATTCCTGGTATATACTTCGAATGCATGCTCTCCCTCCAGCACGTGCTA
TCAAGCATATGAACCTTTCCATCGAAACCCAAACACTAATAACAGTACGC
CATGCGCTTAGGCAGCCATCGCATTGCAACGCACACGTTACGTGTTTGAT
ATGGCCAGCCCCTACATGGCCCCCTGTCACCTCCACCGCAACACACAACA
ACGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGCACACATATTATA
GACTTGCTTTTCCGAGGTCGGTCTGTGGTCACAAGGGATCATTCCATCTC
TCCCTCCCTCTCACCTTTGATTTTTATCGCGCATTGGGTTCGGTACTCCC
ACAGGTCGCTGATTTCTCGGATTTTTTTGCTTGCTCACGCTCTCGCGCTA
TCCACGGCGGAGGTAGAGAAAATAAATAAATATCGACTCTGCCGGGATTT
GAAACCGGGTCCTCCGCCTACTGGGCTGTTGGTCAACCAGTTCAACCACG
GGGCGCGCGGTCACACAAAAATATATTCCTGGTATATACTTCGA
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