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Homology
BLAST of mRNA_S-dermatodea_contig8954.17038.1 vs. uniprot
Match: D8LTN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN9_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 4.280e-12 Identity = 80/110 (72.73%), Postives = 95/110 (86.36%), Query Frame = 1
Query: 1 AGEVARSTGKAGVAIVDKSKELNERYGVSEKVKDAAHNTYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTRAGEAFEGAMDEVAKAASTKDES-DSTGSTRK 327
AG+VARSTG+AG+A+V+K KE+N +YGV++KVK AAH+T+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +RAGEAF GAMD V A S KD+ D G+T+K
Sbjct: 58 AGDVARSTGQAGLAVVEKGKEINTQYGVADKVKGAAHSTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRAGEAFGGAMDSVTNAVSKKDDGQDGWGATKK 167
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.5 |
| Seed ortholog evalue | 1.8e-11 |
| Seed eggNOG ortholog | 2880.D8LTN9 |
| EggNOG OGs | 2E68G@1,2SCZE@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-28_003380.1 |
| Exons | 4 |
| Model size | 1099 |
| Cds size | 330 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8954.17038.1 >prot_S-dermatodea_contig8954.17038.1 ID=prot_S-dermatodea_contig8954.17038.1|Name=mRNA_S-dermatodea_contig8954.17038.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
AGEVARSTGKAGVAIVDKSKELNERYGVSEKVKDAAHNTYEKAKAVNEEH
GVVDKAKAGASRTWQRIREADREHNLTTRAGEAFEGAMDEVAKAASTKDE
SDSTGSTRK* back to topmRNA from alignment at S-dermatodea_contig8954:5435..8326- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8954.17038.1 ID=mRNA_S-dermatodea_contig8954.17038.1|Name=mRNA_S-dermatodea_contig8954.17038.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2892bp|location=Sequence derived from alignment at S-dermatodea_contig8954:5435..8326- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGGAGAAGTCGCCCGATCTACGGGCAAGGCTGGGGTGGCAATCGTGGA
CAAAAGCAAGGAACTCAACGAGCGATATGGTGTTTCCGAAAAGGTCCGCA
TATGCCTCCTATCTATCTACTTGTATATGTCATAGCTTCCTTGAGAAACG
AACGCGTCGTTCTGTGAACGGTGAACGGGATTTAGAACCCCCTTGTCATG
TGAGTTACGCTCTCCTGGACCATTACCTTCTCCCGACGCCAGTCGACCGT
AGTAGTCCCGCTTCCCTTGGATCTCCGTCTATTGTAGCATCTAGCCATCG
GGTCGTCCCCCGGGGTTCGGCTCCATGCTCGCCTTATTTCGACGCTATTT
AGCCGGCGCCTCTACTGGCAATCTGTCACGAGTTCTGCGGAAAATGCACA
CTGTTGACAAGTACTGTCCACAAACGAGTTTCGAGAGAAGCAAACGCGGA
ATGCTGACCAAGGAGGTGAAACGTGGGTCCACGTAGGCAGCGTTTCTTGG
TTCTGGGGTTTTATGGGGCAGAGTCGATCCACGCTGAGTCATGTTTGCGA
GCCCGTGGCGGTCCAAGTCAAGCCATAACCTTAAGCGGCGGCGAACCGCC
GGCTAGTGCCTTGTTCCCTCTGATTTCAGAGTTATTGTTGGTGTTACTTG
TTTATTTTGCACTGTATGGGTAATTCCATAAGTTTTCCGATTATCGATTT
TTCATGTGACCACGAGCGAGCGAGATAGGCAACCTTTGGCGGGCCGGCCG
GTTGTAAGCATTTTCGAGCAATGCCACCGCTGCATAATAGCATATGGAGA
TAGTGCGTGTCTCGACAGGGGATCACGCTGGTCTTGGTGTCTGCAGGCCG
TCCCAACGTCCATCGGCGGCGCGTTCGATCGATTTTGGTTCGCATAGAGG
CGACGTGATTGGCTTGATACCATCCGGTGTTTAGGAGTAAAGTTGTTGAT
ATTGGGCAGCCGACCCCGCCGCTTGTCTAGATAAGGAGGCGGTGCGTTGG
ACCCGTGTAGGGACTCCTCGTTCGTATTTTGTCCGCTACCTGGATTGCGC
CTTGGTGACCCTGTTGAACAGGAGGCAAGAGTCCGTCGCTTCTCTCGGTA
TTTCCGCAAGGAGCAGCCCGCTGGAATGATTCCGGGACCATCTCGCCTTA
TTGCATGTGCAGCAAGCATCGCTGGGAGGTGATCTTGAACCCCCAGAGTA
AGCGCACTTGCATATATGTCGACCGACCACAATCAGTGTAGCTGCACAGC
TATTAATAGCAAGTTTAACGAACCCTAGCTGCCTGTGTCGCCCATCGCAT
TGCGTGTGGTTGTGTCGTATCCTCAGGTAAAGGACGCCGCACACAACACG
TACGAAAAGGCCAAGGCCGTGAACGAAGAGCATGGCGTGGTTGACAAGGC
CAAGGCTGGAGCGTCGCGGACGTGGCAGCGCATCAGGGAGGTGAGGACCG
CTCCTTGCAGCCATCGACCTCGAGGGCGCGTATTTTCAGAAAATGCATGG
TACCTGGCAGCATGGTATGTGTCATTTCGATGCCGATTATGGCAACGAAG
ATCCAGGCCCCCACGAAACGCTACCGCGCGGGGCGCAAACCATCAAACTG
GGCAGGGTCGCAACGCCGCACAGGCCATTGGCCACCTACTCACAAGCCAT
TTTCCCCGGGCATCGCGGTCAGGCGTAAGCAGCATTTTGGCGAGAAGGCA
GCCTCGTAACCAATTCTCCACATCCTGCCGCCGCCCATTTTTGTATGCGT
ACGATTTCGGTGCGCAGGCGGACAGAGAGCACAACTTGACCACGCGGGCC
GGCGAGGCTTTCGAAGGCGCAATGGACGAAGTAGCGAAGGCCGCTTCGAC
GAAGGATGAGTCGGACAGCACTGGGTCCACGAGGAAGTAGAATTTCCGGC
GCGGCCGGGGAGCGTTCGTTCGTGCATTGCGTGTTAATCTTAATGTGTTT
GGTCAGAAACGGTCGGGTTGCTTGAATACGCCCGGGTGAAGGAGACAGTT
TCGAAGTTGCGTGGGGTTTGCCGGTAGCGGCTAGTTGTTTGTGTGTGAGT
AATTCGCGTGTCTCGCATTGGCGTTGTATACATACTACTTGTAGTATATA
TGTATGTATATGTATGCCTGTAGGGAGTGTTGAGACCCACGCAGGCGACG
GGTCGATTCGTTGGAGCTGGGTGGAGCCTGATTTGTCGGGGCCTAATCGG
GTTGCTTGAATACGCCCGGGTGAAGGAGACAGTTTCGAAGTTGCGTGGGG
TTTGCCGGTAGCGGCTAGTTGTTTGTGTGTGAGTAATTCGCGTGTCTCGC
ATTGACGTTGTATACATACTACTTATAGTATATATGTATGTATATGTATG
CCTGTAGGGCGTGTTGAGACTCACGCAGGCGACGGGTCGATTCGTTGGAG
CTGGGTGGAGCCTGATTTGTCGGGGCCTGTTTGTGCTGCCGAGAGCAGAG
AGCAATGGACTGTGAGACAAAAGAGAGGTGCGCCGTGCAAAAAAAGCAGG
TGATGGAATTGCAGGTGGCGAAATGCCCGTGTAAGGCCTTCCCTTGTCGT
TGGGCGACTGATTTTTTTTGTTTATTGGGGAGCCGCTCAGGCTTGCACCG
TCCCTTGGGTCATCTCTTGAATAGTTTGCTGTCGCGTGCATAAATGGTGT
GGGTGCGTGTCGCCTGCGTCCGTGGAAAATGCTTCCACCGTTTCTTCCCG
CAGGAGGAGTTAGTTGCCTCCGGTACGCGAATTCGTTGGCAGCATTGCGC
CCCCAACCGTGCGCTACTTGTATGCACACTTGAATGTTTTTGGATGTATT
TGACGTGTCCTACTGCCCCCCCCCCCCCACCTCCCCCTGTAGTCGGGACG
ATTTATCACCACTGCGCGAAGGGGTTAAGGCATCACTTTCTT back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8954:5435..8326- >mRNA_S-dermatodea_contig8954.17038.1 ID=mRNA_S-dermatodea_contig8954.17038.1|Name=mRNA_S-dermatodea_contig8954.17038.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig8954:5435..8326- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTGGAGAAGTCGCCCGATCTACGGGCAAGGCTGGGGTGGCAATCGTGGA
CAAAAGCAAGGAACTCAACGAGCGATATGGTGTTTCCGAAAAGGCTGGAG
AAGTCGCCCGATCTACGGGCAAGGCTGGGGTGGCAATCGTGGACAAAAGC
AAGGAACTCAACGAGCGATATGGTGTTTCCGAAAAGGTAAAGGACGCCGC
ACACAACACGTACGAAAAGGCCAAGGCCGTGAACGAAGAGCATGGCGTGG
TTGACAAGGCCAAGGCTGGAGCGTCGCGGACGTGGCAGCGCATCAGGGAG
GTAAAGGACGCCGCACACAACACGTACGAAAAGGCCAAGGCCGTGAACGA
AGAGCATGGCGTGGTTGACAAGGCCAAGGCTGGAGCGTCGCGGACGTGGC
AGCGCATCAGGGAGGCGGACAGAGAGCACAACTTGACCACGCGGGCCGGC
GAGGCTTTCGAAGGCGCAATGGACGAAGTAGCGAAGGCCGCTTCGACGAA
GGATGAGTCGGACAGCACTGGGTCCACGAGGAAGTAGGCGGACAGAGAGC
ACAACTTGACCACGCGGGCCGGCGAGGCTTTCGAAGGCGCAATGGACGAA
GTAGCGAAGGCCGCTTCGACGAAGGATGAGTCGGACAGCACTGGGTCCAC
GAGGAAGTAG back to top
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