mRNA_S-dermatodea_contig12787.1703.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12787.1703.1
Unique NamemRNA_S-dermatodea_contig12787.1703.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12787.1703.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12787contigS-dermatodea_contig12787:5824..6162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.4883533-CDS-S-dermatodea_contig12787:5823..61621622924261.4883533-CDS-S-dermatodea_contig12787:5823..6162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12787 5824..6162 +
1694079133.1179187-CDS-S-dermatodea_contig12787:5823..61621694079133.1179187-CDS-S-dermatodea_contig12787:5823..6162Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12787 5824..6162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12787.1703.1prot_S-dermatodea_contig12787.1703.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12787 5824..6162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12787.1703.1

>prot_S-dermatodea_contig12787.1703.1 ID=prot_S-dermatodea_contig12787.1703.1|Name=mRNA_S-dermatodea_contig12787.1703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
QEGGGQETPPPGFQRRRHRRRRQPRGSDHDQSHHASPNNSSSCSNSQSGG
FFLGGGRSSRDDDGDPDTDVGDDNVGGRVSGGDSTSLAVDARQGDDDDGG
GGDDGGGSGGGAR
back to top

mRNA from alignment at S-dermatodea_contig12787:5824..6162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12787.1703.1 ID=mRNA_S-dermatodea_contig12787.1703.1|Name=mRNA_S-dermatodea_contig12787.1703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=339bp|location=Sequence derived from alignment at S-dermatodea_contig12787:5824..6162+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAGAAGGAGGAGGACAAGAAACGCCGCCACCGGGTTTCCAGCGAAGGAG
GCATCGGCGGCGGCGGCAGCCGCGGGGTAGCGACCACGATCAATCCCACC
ACGCATCACCGAACAACAGCAGCAGTTGCAGCAACAGCCAGAGCGGAGGT
TTTTTCCTGGGCGGGGGAAGGTCTAGCAGAGACGATGACGGCGACCCAGA
TACCGACGTTGGCGACGATAACGTAGGCGGTAGAGTTAGCGGTGGAGATA
GTACAAGCCTGGCGGTCGACGCGCGACAGGGTGATGATGATGATGGTGGT
GGTGGTGATGATGGCGGCGGCAGCGGCGGCGGTGCAAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12787:5824..6162+

>mRNA_S-dermatodea_contig12787.1703.1 ID=mRNA_S-dermatodea_contig12787.1703.1|Name=mRNA_S-dermatodea_contig12787.1703.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig12787:5824..6162+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAGAAGGAGGAGGACAAGAAACGCCGCCACCGGGTTTCCAGCGAAGGAG
GCATCGGCGGCGGCGGCAGCCGCGGGGTAGCGACCACGATCAATCCCACC
ACGCATCACCGAACAACAGCAGCAGTTGCAGCAACAGCCAGAGCGGAGGT
TTTTTCCTGGGCGGGGGAAGGTCTAGCAGAGACGATGACGGCGACCCAGA
TACCGACGTTGGCGACGATAACGTAGGCGGTAGAGTTAGCGGTGGAGATA
GTACAAGCCTGGCGGTCGACGCGCGACAGGGTGATGATGATGATGGTGGT
GGTGGTGATGATGGCGGCGGCAGCGGCGGCGGTGCAAGGCAAGAAGGAGG
AGGACAAGAAACGCCGCCACCGGGTTTCCAGCGAAGGAGGCATCGGCGGC
GGCGGCAGCCGCGGGGTAGCGACCACGATCAATCCCACCACGCATCACCG
AACAACAGCAGCAGTTGCAGCAACAGCCAGAGCGGAGGTTTTTTCCTGGG
CGGGGGAAGGTCTAGCAGAGACGATGACGGCGACCCAGATACCGACGTTG
GCGACGATAACGTAGGCGGTAGAGTTAGCGGTGGAGATAGTACAAGCCTG
GCGGTCGACGCGCGACAGGGTGATGATGATGATGGTGGTGGTGGTGATGA
TGGCGGCGGCAGCGGCGGCGGTGCAAGG
back to top