mRNA_S-dermatodea_contig89336.17025.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig89336.17025.1
Unique NamemRNA_S-dermatodea_contig89336.17025.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 5.170e-88
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 1 
Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            MVATLERRE +KRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFL+GVA +MGREWELS
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELS 134
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 4.190e-87
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 1 
Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            MVATLERRE +KRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFL+GVA +MGREWELS
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELS 134
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A895I2F7_9PHAE (PsbA (Fragment) n=1 Tax=Cystoseira humilis TaxID=74463 RepID=A0A895I2F7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.320e-84
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:   31 KKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            +KRDWGTF TWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFL+GVA +MGREWELS
Sbjct:    2 EKRDWGTFDTWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELS 126
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.940e-83
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 1 
Query:   40 DWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            DWG FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS
Sbjct:    1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 122
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A7S4W941_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W941_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.300e-82
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 1 
Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            M ATLERRE     W  F  WITSTENRLYIGWFGCLMFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 MTATLERREGVSL-WERFCAWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELS 134
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A7S9KII2_9PHAE (Photosystem II protein D1 (Fragment) n=2 Tax=Dictyota TaxID=2875 RepID=A0A7S9KII2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 4.840e-82
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 1 
Query:   37 RDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            R  GTFATWITSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS
Sbjct:    1 RGLGTFATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 123
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1HBB6_9PHAE (Photosystem II reaction center protein D1 (Fragment) n=1 Tax=Newhousia sp. CVie-2021a TaxID=2820730 RepID=A0A8K1HBB6_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 6.880e-82
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 1 
Query:   43 WGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            WGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPV GSLLYGNNIISGAVIPSSNAIGIHFYPIWE ASVEEWLYNGGPYQLIVFHFLLGVA+YMGREWELS
Sbjct:    1 WGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVXGSLLYGNNIISGAVIPSSNAIGIHFYPIWEXASVEEWLYNGGPYQLIVFHFLLGVATYMGREWELS 121
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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1PKV9_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata TaxID=2856270 RepID=A0A8K1PKV9_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.490e-81
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1 
Query:   52 FATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELS 118
[Close]
BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1PKQ0_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota adnata TaxID=672007 RepID=A0A8K1PKQ0_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 3.050e-81
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 1 
Query:   52 FATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELS 118
[Close]
BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 251 bits (641), Expect = 4.770e-81
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 1 
Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 405
            M ATLERR+S    W  F  WITSTENRLYIGWFGCLMFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAASV+EWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 MTATLERRQSVSL-WERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELS 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBA_ECTSI5.170e-8894.81Photosystem II protein D1 n=1129 Tax=Eukaryota Tax... [more]
A0A1N7TJI8_9PHAE4.190e-8793.33Photosystem II protein D1 n=412 Tax=Eukaryota TaxI... [more]
A0A895I2F7_9PHAE1.320e-8492.80PsbA (Fragment) n=1 Tax=Cystoseira humilis TaxID=7... [more]
Q5SFY7_9PHAE2.940e-8398.36Photosystem II protein D1 (Fragment) n=10 Tax=Phae... [more]
A0A7S4W941_9STRA3.300e-8288.89Hypothetical protein (Fragment) n=2 Tax=Ditylum br... [more]
A0A7S9KII2_9PHAE4.840e-8296.75Photosystem II protein D1 (Fragment) n=2 Tax=Dicty... [more]
A0A8K1HBB6_9PHAE6.880e-8296.69Photosystem II reaction center protein D1 (Fragmen... [more]
A0A8K1PKV9_9PHAE2.490e-8198.31PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata ... [more]
A0A8K1PKQ0_9PHAE3.050e-8198.31PsbA (Fragment) n=1 Tax=Dictyota adnata TaxID=6720... [more]
PSBA_PHATC4.770e-8189.63Photosystem II protein D1 n=590 Tax=root TaxID=1 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig89336contigS-dermatodea_contig89336:219..623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score267.7
Seed ortholog evalue2.9e-69
Seed eggNOG ortholog2880.D1J6Z2
Preferred namepsbA
KEGG koko:K02703
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs28IP8@1,2QR09@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Hectar predicted targeting categorysignal anchor
Exons1
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925373.7703424-CDS-S-dermatodea_contig89336:218..6231622925373.7703424-CDS-S-dermatodea_contig89336:218..623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89336 219..623 +
1694079889.7044082-CDS-S-dermatodea_contig89336:218..6231694079889.7044082-CDS-S-dermatodea_contig89336:218..623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig89336 219..623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig89336.17025.1prot_S-dermatodea_contig89336.17025.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig89336 219..623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig89336.17025.1

>prot_S-dermatodea_contig89336.17025.1 ID=prot_S-dermatodea_contig89336.17025.1|Name=mRNA_S-dermatodea_contig89336.17025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYI
IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA
ASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS
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mRNA from alignment at S-dermatodea_contig89336:219..623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig89336.17025.1 ID=mRNA_S-dermatodea_contig89336.17025.1|Name=mRNA_S-dermatodea_contig89336.17025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at S-dermatodea_contig89336:219..623+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGCAACTTTAGAAAGACGCGAAAGTAAAAAAAGAGATTGGGGAAC
ATTTGCTACGTGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGT
TTGGTTGTTTAATGTTTCCTACATTATTAACTGCAGCTTCTTGTTATATT
ATCGCTTTCATAGCAGCACCTCCAGTAGATATTGATGGTATTCGTGAACC
TGTTGCTGGATCATTATTATATGGAAACAACATCATCAGTGGTGCTGTAA
TCCCTAGTTCAAATGCAATTGGTATACATTTTTACCCAATTTGGGAAGCA
GCTTCAGTTGAAGAATGGTTATACAATGGTGGTCCTTACCAATTAATCGT
ATTCCATTTTTTACTTGGTGTTGCTAGTTATATGGGTCGTGAATGGGAAC
TTAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig89336:219..623+

>mRNA_S-dermatodea_contig89336.17025.1 ID=mRNA_S-dermatodea_contig89336.17025.1|Name=mRNA_S-dermatodea_contig89336.17025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig89336:219..623+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTTGCAACTTTAGAAAGACGCGAAAGTAAAAAAAGAGATTGGGGAAC
ATTTGCTACGTGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGT
TTGGTTGTTTAATGTTTCCTACATTATTAACTGCAGCTTCTTGTTATATT
ATCGCTTTCATAGCAGCACCTCCAGTAGATATTGATGGTATTCGTGAACC
TGTTGCTGGATCATTATTATATGGAAACAACATCATCAGTGGTGCTGTAA
TCCCTAGTTCAAATGCAATTGGTATACATTTTTACCCAATTTGGGAAGCA
GCTTCAGTTGAAGAATGGTTATACAATGGTGGTCCTTACCAATTAATCGT
ATTCCATTTTTTACTTGGTGTTGCTAGTTATATGGGTCGTGAATGGGAAC
TTAGCATGGTTGCAACTTTAGAAAGACGCGAAAGTAAAAAAAGAGATTGG
GGAACATTTGCTACGTGGATTACTAGTACTGAAAATCGTTTATACATTGG
TTGGTTTGGTTGTTTAATGTTTCCTACATTATTAACTGCAGCTTCTTGTT
ATATTATCGCTTTCATAGCAGCACCTCCAGTAGATATTGATGGTATTCGT
GAACCTGTTGCTGGATCATTATTATATGGAAACAACATCATCAGTGGTGC
TGTAATCCCTAGTTCAAATGCAATTGGTATACATTTTTACCCAATTTGGG
AAGCAGCTTCAGTTGAAGAATGGTTATACAATGGTGGTCCTTACCAATTA
ATCGTATTCCATTTTTTACTTGGTGTTGCTAGTTATATGGGTCGTGAATG
GGAACTTAGC
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