prot_S-dermatodea_contig89336.17025.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig89336.17025.1
Unique Name	prot_S-dermatodea_contig89336.17025.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	135

Homology

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 5.170e-88
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 0

Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            MVATLERRE +KRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFL+GVA +MGREWELS
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELS 134

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 266 bits (681), Expect = 4.190e-87
Identity = 126/135 (93.33%), Postives = 131/135 (97.04%), Query Frame = 0

Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            MVATLERRE +KRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFL+GVA +MGREWELS
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELS 134

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A895I2F7_9PHAE (PsbA (Fragment) n=1 Tax=Cystoseira humilis TaxID=74463 RepID=A0A895I2F7_9PHAE)

HSP 1 Score: 253 bits (645), Expect = 1.320e-84
Identity = 116/125 (92.80%), Postives = 121/125 (96.80%), Query Frame = 0

Query:   11 KKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            +KRDWGTF TWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA S+EEWLYNGGPYQL+VFHFL+GVA +MGREWELS
Sbjct:    2 EKRDWGTFDTWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELS 126

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 255 bits (652), Expect = 2.940e-83
Identity = 120/122 (98.36%), Postives = 120/122 (98.36%), Query Frame = 0

Query:   14 DWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            DWG FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS
Sbjct:    1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 122

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A7S4W941_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W941_9STRA)

HSP 1 Score: 251 bits (641), Expect = 3.300e-82
Identity = 120/135 (88.89%), Postives = 123/135 (91.11%), Query Frame = 0

Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            M ATLERRE     W  F  WITSTENRLYIGWFGCLMFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 MTATLERREGVSL-WERFCAWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELS 134

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A7S9KII2_9PHAE (Photosystem II protein D1 (Fragment) n=2 Tax=Dictyota TaxID=2875 RepID=A0A7S9KII2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 4.840e-82
Identity = 119/123 (96.75%), Postives = 119/123 (96.75%), Query Frame = 0

Query:   13 RDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            R  GTFATWITSTENRLYIGWFGCLM PTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS
Sbjct:    1 RGLGTFATWITSTENRLYIGWFGCLMIPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 123

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1HBB6_9PHAE (Photosystem II reaction center protein D1 (Fragment) n=1 Tax=Newhousia sp. CVie-2021a TaxID=2820730 RepID=A0A8K1HBB6_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 6.880e-82
Identity = 117/121 (96.69%), Postives = 118/121 (97.52%), Query Frame = 0

Query:   15 WGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            WGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPV GSLLYGNNIISGAVIPSSNAIGIHFYPIWE ASVEEWLYNGGPYQLIVFHFLLGVA+YMGREWELS
Sbjct:    1 WGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVXGSLLYGNNIISGAVIPSSNAIGIHFYPIWEXASVEEWLYNGGPYQLIVFHFLLGVATYMGREWELS 121

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1PKV9_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata TaxID=2856270 RepID=A0A8K1PKV9_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 2.490e-81
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query:   18 FATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELS 118

[Close]

BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: A0A8K1PKQ0_9PHAE (PsbA (Fragment) n=1 Tax=Dictyota adnata TaxID=672007 RepID=A0A8K1PKQ0_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 3.050e-81
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query:   18 FATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 FATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVLHFLLGVASYMGREWELS 118

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BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 251 bits (641), Expect = 4.770e-81
Identity = 121/135 (89.63%), Postives = 124/135 (91.85%), Query Frame = 0

Query:    1 MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS 135
            M ATLERR+S    W  F  WITSTENRLYIGWFGCLMFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAASV+EWLYNGGPYQLIV HFLLGVASYMGREWELS
Sbjct:    1 MTATLERRQSVSL-WERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELS 134

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig89336.17025.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBA_ECTSI	5.170e-88	94.81	Photosystem II protein D1 n=1129 Tax=Eukaryota Tax...	[more]
A0A1N7TJI8_9PHAE	4.190e-87	93.33	Photosystem II protein D1 n=412 Tax=Eukaryota TaxI...	[more]
A0A895I2F7_9PHAE	1.320e-84	92.80	PsbA (Fragment) n=1 Tax=Cystoseira humilis TaxID=7...	[more]
Q5SFY7_9PHAE	2.940e-83	98.36	Photosystem II protein D1 (Fragment) n=10 Tax=Phae...	[more]
A0A7S4W941_9STRA	3.300e-82	88.89	Hypothetical protein (Fragment) n=2 Tax=Ditylum br...	[more]
A0A7S9KII2_9PHAE	4.840e-82	96.75	Photosystem II protein D1 (Fragment) n=2 Tax=Dicty...	[more]
A0A8K1HBB6_9PHAE	6.880e-82	96.69	Photosystem II reaction center protein D1 (Fragmen...	[more]
A0A8K1PKV9_9PHAE	2.490e-81	98.31	PsbA (Fragment) n=1 Tax=Dictyota cf. canaliculata ...	[more]
A0A8K1PKQ0_9PHAE	3.050e-81	98.31	PsbA (Fragment) n=1 Tax=Dictyota adnata TaxID=6720...	[more]
PSBA_PHATC	4.770e-81	89.63	Photosystem II protein D1 n=590 Tax=root TaxID=1 R...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 29..135 e-value: 1.5E-27 score: 96.4
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	FAMILY NOT NAMED	coord: 1..135
None	No IPR available	PANTHER	PTHR33149:SF20		coord: 1..135
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..129
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 77..98
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 57..76
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..135
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..56
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 99..109
None	No IPR available	TMHMM	TMhelix		coord: 73..95
None	No IPR available	TMHMM	TMhelix		coord: 31..53
None	No IPR available	TMHMM	TMhelix		coord: 107..129
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 15..135

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig89336	contig	S-dermatodea_contig89336:219..623 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig89336.17025.1	mRNA_S-dermatodea_contig89336.17025.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig89336 219..623 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig89336.17025.1 ID=prot_S-dermatodea_contig89336.17025.1|Name=mRNA_S-dermatodea_contig89336.17025.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
MVATLERRESKKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYI
IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA
ASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000484	Photo_RC_L/M
IPR036854	Photo_II_D1/D2_sf