mRNA_S-dermatodea_contig12785.1702.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12785.1702.1
Unique NamemRNA_S-dermatodea_contig12785.1702.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: D7FQX9_ECTSI (Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX9_ECTSI)

HSP 1 Score: 377 bits (967), Expect = 6.340e-121
Identity = 243/474 (51.27%), Postives = 290/474 (61.18%), Query Frame = 1 
Query:  247 LPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQSSKFVIPEGYWEEFKRARVTFRHHIVYDPQAEDASHGSAGWSGAASEAGTVWGLQEHDHRWSTMC-----EPSDDPHEG-KGAGASPPGHKGERHRGVHVEAARPPRFACRDDSVPRVGALALT-EPPDANRSKFVPVSAQHFHSTQVSEELETLQRRKRRLYTSGGEPPDPSPPRDWLGWQQPRQXXXXXPQRHDVIPESVRQIDVG--LPP--AREDNAD-----GQPGGAGDLWMAQANAAGEQRSSLRREETEEALTIPRETGCNAGKKD-RALTVSSRRWT--VPSHVPPAKGIELPLLRLLDGTGGGAGHSR--IDR---GRASSKPFNKRTRGTGFWDAQL 1596
            L + LR+AGV++VVAPYEADAQLAFL+R+G VDVV++EDSDCLPYGCKKV FKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYI ++VKGLGIATA+KLV+RHRSLDKII A+ SS+FVIPEGYWE++KRAR+TFRHHI+Y+P+ ED     A       + G   GL+     W         E +D  H+G K  G   P  +G  HR    ++    +   R+ +V R G LALT E P A+++KFVP SAQHF STQVS+ LETLQRRKRRLY        P+   + LG            Q+H V P +  ++  G  LP   AR DN        +P     LWM Q   A  +  S        +  +    G   G  + R LT SSRRWT  VPS  PP      PLLRLLDG G  A      +DR   G    +P  KRTRG  FWD  L
Sbjct:  133 LMKALRQAGVELVVAPYEADAQLAFLSRTGAVDVVLSEDSDCLPYGCKKVLFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYIPSSVKGLGIATAYKLVDRHRSLDKIIGAINSSRFVIPEGYWEQYKRARLTFRHHIIYNPETEDEKGHMADGKAMGWQQGPDIGLRATGEGWGQRLSVKSDETADARHDGHKNEGCMYPAAEGSAHR--KPDSRETNQDHAREANV-RQGLLALTGEVPVADQAKFVPASAQHFRSTQVSQGLETLQRRKRRLY--------PAEDPECLGLPS-------RGQQHQVQPGAADRMLHGSNLPVFGARVDNPTCKSGVDRPADNSGLWMVQPQEA--RGMSSVNPPAPVSSPVRLRAGSRLGSPEARVLTASSRRWTLPVPSTAPPVNREGFPLLRLLDGKGKVAPERSWSVDRRIGGARVGQPSPKRTRGVEFWDNLL 586
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A836CAX1_9STRA (Exonuclease 1 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX1_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.150e-49
Identity = 86/156 (55.13%), Postives = 119/156 (76.28%), Query Frame = 1 
Query:  253 QELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQSS-KFVIPEGYWEEFKRARVTFRHHIVYDPQA 717
            + L R G+K VVAPYEADAQLAF+++ G +D +ITEDSDCLP+ CK++ FK++N+G  QEI+ R+L++N   SL+ W  SMFLD+CLL GCDY+   V GLGI TAHKLV RHRS   ++ A+++S KF +P+ + + F+ AR+TFRH  VYDP++
Sbjct:  135 RSLARRGIKFVVAPYEADAQLAFMSQQGLIDAIITEDSDCLPFCCKRMLFKLENDGSAQEIRARDLSSNENPSLAGWTYSMFLDMCLLAGCDYLPR-VHGLGIGTAHKLVARHRSHKPMLAALRASRKFALPDDFEDRFEMARLTFRHQRVYDPRS 289
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: W7TNX5_9STRA (Exonuclease 1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TNX5_9STRA)

HSP 1 Score: 180 bits (457), Expect = 2.690e-48
Identity = 86/155 (55.48%), Postives = 109/155 (70.32%), Query Frame = 1 
Query:  259 LRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQS---SKFVIPEGYWEEFKRARVTFRHHIVYDPQ 714
            L+ A V+ +VAPYEADAQLA+L R G VD+VI+EDSD LPYGC +V FK+D EG  QEI+ RNLA N       W  +MFLD+CLL GCDY+   + GLGI TAHKLV +HR+  K++ A+ +    +  +P  Y E F RAR+TFRHH VYDP+
Sbjct:  137 LQEANVRYMVAPYEADAQLAYLARKGVVDLVISEDSDTLPYGCPRVLFKLDKEGRAQEIERRNLALNEDYDFEGWTENMFLDMCLLAGCDYLP-NLPGLGIKTAHKLVRQHRTYKKVLGALATPGGKEMAVPGDYMERFARARLTFRHHYVYDPE 290
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A2D4BRI3_PYTIN (Exonuclease 1 (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRI3_PYTIN)

HSP 1 Score: 177 bits (449), Expect = 2.410e-46
Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:  196 KCDHQSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDP 711
            KC  ++ D+ P + H R+ Q L+  GVK VVAPYEADAQLAFL R+G VD VITEDSDCLP+GC KV FKMD +G  QE+Q  NL  N  L    + + MFL++C+  GCDY+ A++ G G+  A+ LV++H S  KI+RA++   K  +PE Y  EF+RA++TFRH  VYDP
Sbjct:  117 KCFSRAADVSPFMAH-RVIQRLKAMGVKYVVAPYEADAQLAFLVRAGLVDGVITEDSDCLPFGCGKVLFKMDRDGVAQEVQTANLKHNKELRFHMFSDDMFLEMCIFSGCDYL-ASLPGFGLKKAYALVKQHGSYRKIVRALRLEGKVRVPETYEAEFERAKLTFRHQRVYDP 287
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A4D9D213_9STRA (Exonuclease 1 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D213_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.850e-45
Identity = 86/155 (55.48%), Postives = 109/155 (70.32%), Query Frame = 1 
Query:  259 LRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQS---SKFVIPEGYWEEFKRARVTFRHHIVYDPQ 714
            L+ A V+ +VAPYEADAQLA+L R G VD+VI+EDSD LPYGC +V FK+D EG  QEI+ RNLA N       W  +MFLD+CLL GCDY+   + GLGI TAHKLV +HR+  K++ A+ +    +  +P  Y E F RAR+TFRHH VYDP+
Sbjct:   78 LQEANVRYMVAPYEADAQLAYLARKGVVDLVISEDSDTLPYGCPRVLFKLDKEGRAQEIERRNLALNEDYDFEGWTENMFLDMCLLAGCDYLP-NLPGLGIKTAHKLVRQHRTYKKVLGALATPGGKEMAVPGDYMERFARARLTFRHHYVYDPE 231
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A1V9ZBX7_9STRA (Exonuclease 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZBX7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 4.620e-44
Identity = 85/172 (49.42%), Postives = 123/172 (71.51%), Query Frame = 1 
Query:  208 QSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDPQAE 720
            ++ D+ PL+ H R+ Q L++  VK +VAPYEADAQ+A+L R+G VD VI+EDSDCLP+GC  V FKMD  G+  EI L++LA N  LS   + + MFLD+C+L GCDY+ A++ GLG+  +H L++R+ S  K++R+++   K  I + Y E+F+RAR+TFRH  VYDP  +
Sbjct:  121 KAVDVSPLMAH-RVIQCLKKRNVKYIVAPYEADAQMAYLARNGLVDAVISEDSDCLPFGCHTVLFKMDQVGNVDEIVLKDLANNKALSFVGFSDDMFLDMCILSGCDYV-ASIPGLGVKKSHGLLQRYGSWKKVVRSLRLEGKLTIAKSYEEDFERARLTFRHQRVYDPTTQ 290
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A2D4BNR4_PYTIN (Katanin p60 ATPase-containing subunit A1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNR4_PYTIN)

HSP 1 Score: 177 bits (449), Expect = 8.900e-44
Identity = 91/173 (52.60%), Postives = 120/173 (69.36%), Query Frame = 1 
Query:  196 KCDHQSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDP 711
            KC  ++ D+ P + H R+ Q L+  GVK VVAPYEADAQLAFL R+G VD VITEDSDCLP+GC KV FKMD +G  QE+Q  NL  N  L    + + MFL++C+  GCDY+ A++ G G+  A+ LV++H S  KI+RA++   K  +PE Y  EF+RA++TFRH  VYDP
Sbjct:  526 KCFSRAADVSPFMAH-RVIQRLKAMGVKYVVAPYEADAQLAFLVRAGLVDGVITEDSDCLPFGCGKVLFKMDRDGVAQEVQTANLKHNKELRFHMFSDDMFLEMCIFSGCDYL-ASLPGFGLKKAYALVKQHGSYRKIVRALRLEGKVRVPETYEAEFERAKLTFRHQRVYDP 696
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A1V9YDM5_9STRA (Exonuclease 1 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDM5_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.260e-43
Identity = 84/176 (47.73%), Postives = 123/176 (69.89%), Query Frame = 1 
Query:  196 KCDHQSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDPQAE 720
            +C  ++ D+ P + H R+ Q L++  V+ VVAPYEADAQ+A+L R+G VD VI+EDSDCLP+GC  V FKMDN GH  EI+L +LA N  LS   + + MFLD+C+L GCDY+ A++ GLG+  +H L++R+ +  K++RA++   K  I + Y  +  +AR+TFRH  VYDP+ +
Sbjct:  117 QCFVKAVDVSPYMAH-RVIQSLKKRKVQYVVAPYEADAQMAYLARAGLVDAVISEDSDCLPFGCPTVLFKMDNTGHVDEIRLADLAKNKALSFVGFNDDMFLDMCILSGCDYV-ASIPGLGVKKSHGLLQRYGTWQKVVRALRLEGKLAITKSYEADVTQARLTFRHQRVYDPRTK 290
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: A0A485L1J1_9STRA (Exonuclease 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1J1_9STRA)

HSP 1 Score: 170 bits (431), Expect = 1.290e-43
Identity = 87/176 (49.43%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:  208 QSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDPQAEDASH 732
            ++ D+ P + H R+ Q L++ GVK VVAPYEADAQ+AF+ R+G VD VI+EDSDCLPYGCKKV FKMD  G  + I + +LA N  LS   + + MFLD+C+L GCDY+ A++ GLGI  +H L+ R+ S  K++RA++   K  I + Y  +  +AR TFRH  VYDP  +   H
Sbjct:  121 KAVDVSPYMAH-RVIQSLKKKGVKYVVAPYEADAQMAFMVRAGLVDAVISEDSDCLPYGCKKVLFKMDQYGSVEVIDMISLAKNKTLSFVGFTDDMFLDMCILSGCDYV-ASIPGLGIKKSHGLILRYGSYQKVVRALRLEGKMAIAKSYENDVAQARWTFRHQRVYDPVTQTLVH 294
[Close]
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Match: T0S5C3_SAPDV (Exonuclease 1 n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S5C3_SAPDV)

HSP 1 Score: 168 bits (426), Expect = 1.480e-43
Identity = 84/176 (47.73%), Postives = 122/176 (69.32%), Query Frame = 1 
Query:  196 KCDHQSTDL*PLIRHSRLPQELRRAGVKVVVAPYEADAQLAFLNRSGHVDVVITEDSDCLPYGCKKVFFKMDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGLGIATAHKLVERHRSLDKIIRAVQ-SSKFVIPEGYWEEFKRARVTFRHHIVYDPQAE 720
            +C  ++ D+ P + H R+ + L++  V+ VVAPYEADAQ+A+L R+G VD VI+EDSDCLP+GC  V FKMD  GH  EIQL NLA N  LS   + + MFLD+C++ GCDY+ A++ GLG+  +H L++R+ S  K++RA++  SK  I   Y  + + AR+TFRH  V+DP+ +
Sbjct:   58 QCFVKAVDVSPFMAH-RVIECLKKRNVQYVVAPYEADAQMAYLARNGLVDAVISEDSDCLPFGCSTVLFKMDQAGHVDEIQLSNLAKNKGLSFVGFNDDMFLDMCIMSGCDYV-ASIPGLGVKKSHGLLQRYGSWRKVVRALRIESKLKISPTYEADVEEARLTFRHQRVFDPRTK 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12785.1702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX9_ECTSI6.340e-12151.27Exonuclease 1 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A836CAX1_9STRA1.150e-4955.13Exonuclease 1 (Fragment) n=1 Tax=Tribonema minus T... [more]
W7TNX5_9STRA2.690e-4855.48Exonuclease 1 n=1 Tax=Nannochloropsis gaditana Tax... [more]
A0A2D4BRI3_PYTIN2.410e-4652.60Exonuclease 1 (Fragment) n=1 Tax=Pythium insidiosu... [more]
A0A4D9D213_9STRA4.850e-4555.48Exonuclease 1 n=1 Tax=Nannochloropsis salina CCMP1... [more]
A0A1V9ZBX7_9STRA4.620e-4449.42Exonuclease 1 n=1 Tax=Thraustotheca clavata TaxID=... [more]
A0A2D4BNR4_PYTIN8.900e-4452.60Katanin p60 ATPase-containing subunit A1 n=1 Tax=P... [more]
A0A1V9YDM5_9STRA1.260e-4347.73Exonuclease 1 n=1 Tax=Achlya hypogyna TaxID=120277... [more]
A0A485L1J1_9STRA1.290e-4349.43Exonuclease 1 n=1 Tax=Aphanomyces stellatus TaxID=... [more]
T0S5C3_SAPDV1.480e-4347.73Exonuclease 1 n=1 Tax=Saprolegnia diclina (strain ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12785contigS-dermatodea_contig12785:424..5958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.1
Seed ortholog evalue1.6e-78
Seed eggNOG ortholog2880.D7FQX9
KEGG koko:K10746
KEGG Pathwayko03430,map03430
EggNOG free text desc.5'-3' exodeoxyribonuclease activity
EggNOG OGsCOG0258@1,KOG2518@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelix-hairpin-helix motif, class 2
Ec32 orthologEc-09_003340.1
Exons8
Model size1605
Cds size1200
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.3642218-CDS-S-dermatodea_contig12785:423..7101622924261.3642218-CDS-S-dermatodea_contig12785:423..710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 424..710 -
1694079133.0097146-CDS-S-dermatodea_contig12785:423..7101694079133.0097146-CDS-S-dermatodea_contig12785:423..710Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 424..710 -
1622924261.3799117-CDS-S-dermatodea_contig12785:851..11251622924261.3799117-CDS-S-dermatodea_contig12785:851..1125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 852..1125 -
1694079133.0255413-CDS-S-dermatodea_contig12785:851..11251694079133.0255413-CDS-S-dermatodea_contig12785:851..1125Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 852..1125 -
1622924261.3902364-CDS-S-dermatodea_contig12785:1470..15591622924261.3902364-CDS-S-dermatodea_contig12785:1470..1559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 1471..1559 -
1694079133.0342672-CDS-S-dermatodea_contig12785:1470..15591694079133.0342672-CDS-S-dermatodea_contig12785:1470..1559Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 1471..1559 -
1622924261.4026475-CDS-S-dermatodea_contig12785:2321..25561622924261.4026475-CDS-S-dermatodea_contig12785:2321..2556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 2322..2556 -
1694079133.0447066-CDS-S-dermatodea_contig12785:2321..25561694079133.0447066-CDS-S-dermatodea_contig12785:2321..2556Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 2322..2556 -
1622924261.4134457-CDS-S-dermatodea_contig12785:3816..39301622924261.4134457-CDS-S-dermatodea_contig12785:3816..3930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 3817..3930 -
1694079133.06328-CDS-S-dermatodea_contig12785:3816..39301694079133.06328-CDS-S-dermatodea_contig12785:3816..3930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 3817..3930 -
1622924261.4245443-CDS-S-dermatodea_contig12785:4324..44351622924261.4245443-CDS-S-dermatodea_contig12785:4324..4435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 4325..4435 -
1694079133.075935-CDS-S-dermatodea_contig12785:4324..44351694079133.075935-CDS-S-dermatodea_contig12785:4324..4435Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 4325..4435 -
1622924261.433946-CDS-S-dermatodea_contig12785:4945..50351622924261.433946-CDS-S-dermatodea_contig12785:4945..5035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 4946..5035 -
1694079133.0855603-CDS-S-dermatodea_contig12785:4945..50351694079133.0855603-CDS-S-dermatodea_contig12785:4945..5035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12785 4946..5035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.4455583-UTR-S-dermatodea_contig12785:5035..50471622924261.4455583-UTR-S-dermatodea_contig12785:5035..5047Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12785 5036..5047 -
1694079133.0954132-UTR-S-dermatodea_contig12785:5035..50471694079133.0954132-UTR-S-dermatodea_contig12785:5035..5047Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12785 5036..5047 -
1622924261.457908-UTR-S-dermatodea_contig12785:5565..59581622924261.457908-UTR-S-dermatodea_contig12785:5565..5958Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12785 5566..5958 -
1694079133.1050024-UTR-S-dermatodea_contig12785:5565..59581694079133.1050024-UTR-S-dermatodea_contig12785:5565..5958Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12785 5566..5958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12785.1702.1prot_S-dermatodea_contig12785.1702.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12785 424..5035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12785.1702.1

>prot_S-dermatodea_contig12785.1702.1 ID=prot_S-dermatodea_contig12785.1702.1|Name=mRNA_S-dermatodea_contig12785.1702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=400bp
MDNEGHGQEIQLRNLAANTPLSLSNWKNSMFLDLCLLVGCDYITATVKGL
GIATAHKLVERHRSLDKIIRAVQSSKFVIPEGYWEEFKRARVTFRHHIVY
DPQAEDASHGSAGWSGAASEAGTVWGLQEHDHRWSTMCEPSDDPHEGKGA
GASPPGHKGERHRGVHVEAARPPRFACRDDSVPRVGALALTEPPDANRSK
FVPVSAQHFHSTQVSEELETLQRRKRRLYTSGGEPPDPSPPRDWLGWQQP
RQQQQQQPQRHDVIPESVRQIDVGLPPAREDNADGQPGGAGDLWMAQANA
AGEQRSSLRREETEEALTIPRETGCNAGKKDRALTVSSRRWTVPSHVPPA
KGIELPLLRLLDGTGGGAGHSRIDRGRASSKPFNKRTRGTGFWDAQLLR*
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mRNA from alignment at S-dermatodea_contig12785:424..5958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12785.1702.1 ID=mRNA_S-dermatodea_contig12785.1702.1|Name=mRNA_S-dermatodea_contig12785.1702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5535bp|location=Sequence derived from alignment at S-dermatodea_contig12785:424..5958- (Saccorhiza dermatodea SderLu1190fm monoicous)
CATGAGGGTGAATTCCGAACACTTCAATAGAAAAGCCCAGACATGTGAGA
ACGTCGTGGTCATAATCACATACTATATACGTCATTCCGTAGTGTTCGTT
CGATTTCTCCATTTCTCATCCGCCCACGAGCAGGATCGGCAATTATTGGG
AATTATTGGGAATTATTGGCAATTATTGGCAGACCGGTCGGTTGCAAGTG
TGATCATCAATCAACCGACCTTTAGCCGTTAATTCGTCACTCTCGACTGC
CGCAGGAGCTACGCCGCGCGGGGGTGAAGGTCGTCGTGGCGCCGTATGAA
GCAGACGCGCAGTTGGCGTTCCTCAACCGATCCGGACATGTCGACGTGGT
GATCACGGAGGATTCGGACTGCCTTCCTTATGGTTGCAAGAAGGTGTACC
ATAGTGTGTAGTGGCGTTTCTTTCTTTCTGTATGGTATCAGCGTTGTTTC
CGGCCGCATCGAGGGGCTTGCTGGTGTTTTTTGTTTTCGCCGTCCACCAT
AGTCGTGGCCGTGGGTTACCGGAATCAATCGCGAATATTTTCCCTTGGTT
TTTGTGGCCGTTTGCTCCGTTCTGTTTTCCTTGATTGGTTGGTCTTGTGC
CAACGGCTAGATTTTGAGGTGAGTCAATTTGAGTCCACCACCATGATCAT
CAACATCGGCAGTTTTTGGATCGCGGTCCGACCAATGCCAGAGGGAGCAA
TGCGTCTCGTGAAAGAACGTGCACAACTTCATTCACAGTTGTGACAACCA
ACAAGCTTCGGATATGAGCGCCCGTAACAGCCTGAATCGTGGAAGGCGTA
CGCGGTAGGTGTGAGTTCGGCGTCGATCCCCCCTCGCGTTTTCTTCAGGA
TGCATGACACTGTTTCCGTCGCGATCGCTGCCCGCATCAACCATGTGCCT
TCCTGCTCCAGGTGTTTTTCAAGATGGACAACGAGGGCCATGGGCAGGAG
ATCCAGCTGAGAAACTTGGCTGCTAACACGCCGCTGTCGCTCTCCAACTG
GAAGAACAGCATGGTGAGACAGCGCCTAGCGCTTCCCGCTGCCGGAAAAT
TGTCCAGCGCTCGCTGCCACACTACGTGTATCATCGCCGGCAAGCTATTT
ATAGCCGCATTTTTCCGGTAAGAAGGGTGCGAAAATCACAGCCGCGCCGC
ACCGAAAGGATGATACATTATATCAGTATGACGTCATAAGCTATGGAGTA
TGTACAGTAGTAGCACGACTAAATGGTCCTCAAACGTCGCAGCAGCGCGT
CGCATAGCGCAGTCTCGGTCGCCGGGCCGTGTCCGACTCGGGCGTCATGC
TTTCGCCCTTGGTCGAGGTTTGCTGCCCGGTATTTACGTCGTGCTCGTTC
GTGCACCTGGTTCTACAACCTTCCATGCTGTTTAGATGTCGTTGATGCTA
GTATCTCACCCGTTTGCGTTCGATGTGTGTGAGGAAGCTTTACGGCGATG
GAGTACATGCAGAACCTACGAGGAACCGCCGCGTTGCGAGGCTGACGTCC
TCCCCCTTGCCCCTTCATGGCAGTTTTTGGACCTGTGCCTGCTGGTGGGG
TGCGATTACATCACTGCCACCGTCAAGGGGCTGGGTATCGCAACGGCACA
CAAGCTGGTTGAACGACATCGGAGCCTCGACAAGGTGACTTTCCGTGGAG
ACTGGTGTCGTTCTGTGCGATGCGACTACCGCTGCTTCTGTCCGATACTG
ATTCTTAAGCGCGCGGTCGGAGAAGGGTAGATTAGCCTCGCGTGAAATCC
CACGTGCTTCGAAGGTTACCAAATCGCTGGCGAGGACACCGGATACCGAA
ATCTCGCTGGAACGGGAAAAACTGTTCGCTAAAAATACACGGTGTGGTCG
TCCACACGTCAATCGCTGTTTTGGACGGGTGCGGACGATTCGTGTCAAAA
CGCCAAGGTATGGTTGTTACTCTCAACGGCGATAAAATCTCAATAGCAAC
TCCCTCGCACCACGGTGCAAGGAAAATTATTGATGAACTACGTATTTCGG
CCGCCGCCTCGACCGTGCCTCGGGGCAGATCATTCGCGCGGTACAATCGT
CCAAGTTCGTGATCCCAGAAGGATACTGGGAGGAGTTCAAGAGGGCCCGC
GTGACGTTTCGACATCACATCGTCTACGACCCACAGGCGGAGGTAGGACG
CAGTACCGTTCAAAGTCGAGGTGGGGGATTATAGAGGCACGCCACTCACA
TATTACATGTCTGTTAAGTCATCGAAACATACGCCATAAGGCCGTCTCTA
TGTCTAGCGTCAGAGGCTAACCCTATTACTGGACGCTAGGTTGCTCACTG
CAAACAAGACGCCCAAGAAGTTGCGCTTCGCTTCGATGCAAAATGTCTGC
CGTTACGCCACAATAATACCGCGTCGGCGATTCAAGCGCGATTCCCACGT
CCCATGAAGCTTACACGATCGTGCACCATGCCATGCGTGCACAAACAAGC
CGTCCGTTTCTTCGCGCGTGCAATCTGTCGTGGAGAGTTGACTTGATGTG
CACAACTTCCTCCCCTCCGCGCCCTGCAACAGCGCACAACGCACCTCATG
CCGCTCGGAGACACCGCCAAAGAGATGGGCCATCTAGACTTCCTAGGTTC
TCATCTACCACCCCAGGTCGCGCAAGGTACTGGATACGGCGTATAGCCCA
GTGATGTCTTGATATTTTCGCGCCCTACACGTGTCTTGTGACGGTAGTGA
CTTCCTTGTGCTGTAGACGCCCACGGCCTTTCCCCGTGTTACAAAACCTT
CGGGGTTGTGAAGCACAGTTTTCATGCCTTGTGCACGGGTTTGGACCTGC
CAGCATGTTTTGCTCGTTTGCTTGTTACCTGCGATTAAGTTTCGACAGCC
GCACGCACTCCTCCAGGCAGGCATGCCACGCGCGTTGTTGCTGTCATGTA
AACCTGTCATGCTCTCATAGCCGCATCCTCCTCGTTTGCTCGTGCTGCGC
CATCCACGCAATGCCCAGGCGTAGCCTCTGGGGATTTGCTCCCTACGAAC
CACCAGCCTTACGAGAGAGTGGCCCCTACGGCTACGGAGACCACCGCATC
CCGCCCGCAAGCGACTTTGCCCGGAGCAAGGAGCCCACAGGATGTGCCCG
TTTCTATCGGCGCGGTCGCGGCCACCGGTAGCCCTGGCATTACCGGCGAA
CTCGGCAGCATTGGTGAGCCGATCGCTGACCTACCGGCCCCGGCAGTTTC
ATCTCGTCCGCCGGGGATGGCGGAGACGATGTTTGCAGAGACGATGTGCG
CCGAAACAAGAGGGGAGGGCTACACTGGAGCCCGTGGATCCGGCGAGGTA
AGTACGTTGTCAAGCCAGCCTGCGTTCACCGGAGCTTTCATCGATAGGCC
CTTCGGCAGTGTGAGGCGCGCCCTGGCAGAACTCCCACCCGCGGCACGCG
AGGATGCCTCTCATGGGTCGGCTGGGTGGAGTGGAGCGGCAAGCGAGGCG
GGTACCGTGTGGGGACTTCAGGAGCACGACCACCGGTGGTCGACCATGTG
CGAGCCGTCAGATGATCCGCACGAGGGGAAAGGTGCCGGTGCGTCGCCGC
CTGGCCACAAAGGCGAGAGGCATCGCGGCGTCCACGTTGAGGCAGCGCGG
CCTCCGAGGTTTGCCTGTCGCGACGATTCAGTGCCTCGTTCTGCCGCGGG
GACACGTCCAGCCCTTGGGCTCGATTTGGCACAAGTAAAAGCGGCAGAGC
GTGATGCACCGCCCGCTATCCTGCCTGTCCCCCGCGAGTCTTCATCAGCG
ACGAACCTTGAAGTTCCTGCTACATCCTTGGGTAGAGGAGGAACGAGGCC
GGTCTCCCTCCTCCCTGTGGGAGAGGCAAAAAGGAGCGGCGAAGGACCCG
GCGACTGGGCGCCTCAGGGCTGGCGAGAAGAATTTCCAGCGGGTGCGGCA
GGTTCTCAGCCTTGGGGCGCCACGGATTCGTCAACGCGGGACGTAGGGTG
GGGGAACGCAGTCGCGGGTGCCGAGCAACCCGTTTGGGGTGAGGATTGCG
GCGAGGGGGGAGTGACTGAGGTGCGGTATTCCGGGGGCCTTTGCCGAAGT
GGAGAGAACGCCGACAATGGGTTTCCACCTGAGATCCGGTTCGGTTGGTC
GCGGTGTGCGCGTCCCTTGGAGCGGACCGAGAGAGAGCACGCATCCACGC
CGGAAGGCGTGGAGGTCGGGGGACAGGATGAGTACGAGACGAATGCTGGC
AGCTCTGGCGAGGTGCGTCCTAGGCTACATGATTTGGCGTCCCGGTTTTG
CTGTGCCTCACTGCAATAAATTGGACATCAGAGCAAGAATAATTGTAGAT
ACTATCACCGACCACGTGCCCATAAGCGTTGGAAAATCAAAGCCTACCCT
CGTCACGCCGTGCAACGGTTTTTACGTGCCCAGGTCGACACGCGACGAGG
GGTGGGTGCTTTGGCTCTCACGGAACCTCCAGATGCAAATCGCTCTAAAT
TCGTTCCCGTCTCAGCGCAGCACTTCCACAGCACGCAGGTGACGATCGAA
TCAGCAAACGAACAAGGTTTCGTACCCACGGGGGGGTGTATCCATATTTT
TTTGCTGCGCGTCACTAAAGTTATGAGGGTGGGATTATGCTGGTTTTTTT
TCAGTCCCACACCTTCGACGACCGACCTTATGTCTTCAAAGCCCGTTTCT
CCCCGGCATAGCAGTATGATAGTATTTGCCTTCGATTTTTGTACATTTTA
TCGTGCATTGCATTATTGGGCGCAGCAATCCCGCAGGTCGCAGTCAGACG
GCACCAAACTCAGCTTAATGGCGCCCACGCGTTCGTGCGGTTGACGGTAC
CACCGCGCATTCCGTGCTTTTGACACACGCCAGGTCAGCGAAGAGCTCGA
AACACTGCAACGGAGAAAACGCCGCCTGTACACGTCGGGGGGGGAGCCCC
CCGACCCCTCGCCGCCTCGAGATTGGCTTGGATGGCAACAGCCTAGGCAG
CAGCAGCAGCAGCAACCGCAACGGCACGACGTCATCCCTGAGAGCGTACG
CCAAATAGACGTTGGCCTGCCGCCGGCACGAGAGGATAACGCGGATGGCC
AACCAGGTGGCGCTGGAGACCTGTGGATGGCCCAAGCCAATGCAGCGGGA
GAACAGAGTTGCGAGTCGGGCGCGCCGTATCAGGGGGGGGGCGGCGATGG
CGCCGGCCAGGAGTCGAAAGGGATCTCGTTCTTTAGAAAGGGCTCGCGGC
GACGAGGTCAAAAAGGTTTGACCTCGCCGCTGTCTCCTGTCGCCGTAGGG
TCGTCTCTGCGTCGGGAGGAGACTGAAGAAGCTTTGACAATTCCACGCGA
AACAGGGTGTAATGCTGGGAAGAAGGATCGAGCGTTGACAGTTTCCTCAC
GGCGGTGGACTGTCCCTTCGCATGTCCCGCCTGCAAAGGGGATAGAACTC
CCGCTTTTGCGGCTTTTGGATGGGACGGGGGGGGGCGCTGGGCACAGCCG
AATAGACCGCGGGAGGGCGTCTTCGAAGCCGTTCAACAAACGTACCCGTG
GGACGGGGTTTTGGGATGCGCAGCTCCTACGATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12785:424..5958-

>mRNA_S-dermatodea_contig12785.1702.1 ID=mRNA_S-dermatodea_contig12785.1702.1|Name=mRNA_S-dermatodea_contig12785.1702.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2400bp|location=Sequence derived from alignment at S-dermatodea_contig12785:424..5958- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACAACGAGGGCCATGGGCAGGAGATCCAGCTGAGAAACTTGGCTGC
TAACACGCCGCTGTCGCTCTCCAACTGGAAGAACAGCATGATGGACAACG
AGGGCCATGGGCAGGAGATCCAGCTGAGAAACTTGGCTGCTAACACGCCG
CTGTCGCTCTCCAACTGGAAGAACAGCATGTTTTTGGACCTGTGCCTGCT
GGTGGGGTGCGATTACATCACTGCCACCGTCAAGGGGCTGGGTATCGCAA
CGGCACACAAGCTGGTTGAACGACATCGGAGCCTCGACAAGTTTTTGGAC
CTGTGCCTGCTGGTGGGGTGCGATTACATCACTGCCACCGTCAAGGGGCT
GGGTATCGCAACGGCACACAAGCTGGTTGAACGACATCGGAGCCTCGACA
AGATCATTCGCGCGGTACAATCGTCCAAGTTCGTGATCCCAGAAGGATAC
TGGGAGGAGTTCAAGAGGGCCCGCGTGACGTTTCGACATCACATCGTCTA
CGACCCACAGGCGGAGATCATTCGCGCGGTACAATCGTCCAAGTTCGTGA
TCCCAGAAGGATACTGGGAGGAGTTCAAGAGGGCCCGCGTGACGTTTCGA
CATCACATCGTCTACGACCCACAGGCGGAGGATGCCTCTCATGGGTCGGC
TGGGTGGAGTGGAGCGGCAAGCGAGGCGGGTACCGTGTGGGGACTTCAGG
AGCACGACCACCGGTGGTCGACCATGTGCGAGCCGTCAGATGATCCGCAC
GAGGGGAAAGGTGCCGGTGCGTCGCCGCCTGGCCACAAAGGCGAGAGGCA
TCGCGGCGTCCACGTTGAGGCAGCGCGGCCTCCGAGGTTTGCCTGTCGCG
ACGATTCAGTGCCTCGATGCCTCTCATGGGTCGGCTGGGTGGAGTGGAGC
GGCAAGCGAGGCGGGTACCGTGTGGGGACTTCAGGAGCACGACCACCGGT
GGTCGACCATGTGCGAGCCGTCAGATGATCCGCACGAGGGGAAAGGTGCC
GGTGCGTCGCCGCCTGGCCACAAAGGCGAGAGGCATCGCGGCGTCCACGT
TGAGGCAGCGCGGCCTCCGAGGTTTGCCTGTCGCGACGATTCAGTGCCTC
GGGTGGGTGCTTTGGCTCTCACGGAACCTCCAGATGCAAATCGCTCTAAA
TTCGTTCCCGTCTCAGCGCAGCACTTCCACAGCACGCAGGGGTGGGTGCT
TTGGCTCTCACGGAACCTCCAGATGCAAATCGCTCTAAATTCGTTCCCGT
CTCAGCGCAGCACTTCCACAGCACGCAGGTCAGCGAAGAGCTCGAAACAC
TGCAACGGAGAAAACGCCGCCTGTACACGTCGGGGGGGGAGCCCCCCGAC
CCCTCGCCGCCTCGAGATTGGCTTGGATGGCAACAGCCTAGGCAGCAGCA
GCAGCAGCAACCGCAACGGCACGACGTCATCCCTGAGAGCGTACGCCAAA
TAGACGTTGGCCTGCCGCCGGCACGAGAGGATAACGCGGATGGCCAACCA
GGTGGCGCTGGAGACCTGTGGATGGCCCAAGCCAATGCAGCGGGAGAACA
GAGTCAGCGAAGAGCTCGAAACACTGCAACGGAGAAAACGCCGCCTGTAC
ACGTCGGGGGGGGAGCCCCCCGACCCCTCGCCGCCTCGAGATTGGCTTGG
ATGGCAACAGCCTAGGCAGCAGCAGCAGCAGCAACCGCAACGGCACGACG
TCATCCCTGAGAGCGTACGCCAAATAGACGTTGGCCTGCCGCCGGCACGA
GAGGATAACGCGGATGGCCAACCAGGTGGCGCTGGAGACCTGTGGATGGC
CCAAGCCAATGCAGCGGGAGAACAGAGGTCGTCTCTGCGTCGGGAGGAGA
CTGAAGAAGCTTTGACAATTCCACGCGAAACAGGGTGTAATGCTGGGAAG
AAGGATCGAGCGTTGACAGTTTCCTCACGGCGGTGGACTGTCCCTTCGCA
TGTCCCGCCTGCAAAGGGGATAGAACTCCCGCTTTTGCGGCTTTTGGATG
GGACGGGGGGGGGCGCTGGGCACAGCCGAATAGACCGCGGGAGGGCGTCT
TCGAAGCCGTTCAACAAACGTACCCGTGGGACGGGGTTTTGGGATGCGCA
GCTCCTACGATAGGGTCGTCTCTGCGTCGGGAGGAGACTGAAGAAGCTTT
GACAATTCCACGCGAAACAGGGTGTAATGCTGGGAAGAAGGATCGAGCGT
TGACAGTTTCCTCACGGCGGTGGACTGTCCCTTCGCATGTCCCGCCTGCA
AAGGGGATAGAACTCCCGCTTTTGCGGCTTTTGGATGGGACGGGGGGGGG
CGCTGGGCACAGCCGAATAGACCGCGGGAGGGCGTCTTCGAAGCCGTTCA
ACAAACGTACCCGTGGGACGGGGTTTTGGGATGCGCAGCTCCTACGATAG
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