mRNA_S-dermatodea_contig1278.1700.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1278.1700.1
Unique NamemRNA_S-dermatodea_contig1278.1700.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: D7FUP7_ECTSI (DNA topoisomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUP7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.760e-47
Identity = 79/88 (89.77%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:    1 VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            V ANCGGE+FTATGLMVTERNWL +YEP+ERWTGR IPEFFQGQEFVPSVLVM+EG+TQAP LLSESDLIGLMDQKGIGTDATIAEHI
Sbjct:  240 VLANCGGEDFTATGLMVTERNWLDVYEPFERWTGRNIPEFFQGQEFVPSVLVMDEGRTQAPPLLSESDLIGLMDQKGIGTDATIAEHI 327
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A835YM61_9STRA (DNA topoisomerase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM61_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.140e-29
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = 1 
Query:   19 GEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            GEEF+A+GLM+TERNWL IY P+ERW+ + IP F  GQEFVP+ L++ EG+T+ P LLSESDLI LMD   IGTDATIAEHI
Sbjct:  262 GEEFSASGLMITERNWLEIYHPWERWSDKAIPTFTVGQEFVPTSLMLTEGRTEPPPLLSESDLIQLMDANRIGTDATIAEHI 343
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A067Q4C2_9AGAM (DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 33604 TaxID=933084 RepID=A0A067Q4C2_9AGAM)

HSP 1 Score: 119 bits (299), Expect = 1.580e-29
Identity = 53/88 (60.23%), Postives = 75/88 (85.23%), Query Frame = 1 
Query:    1 VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            V A CGGEEF+ATGL+V ERN+L++Y PY++W+ + +PEF +GQEF+P+V  ++EG+T +P LL+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  427 VDAECGGEEFSATGLVVLERNYLLVY-PYDKWSDKELPEFTEGQEFMPTVCELKEGQTTSPTLLTEADLVTLMDKNGIGTDATIAQHI 513
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: UPI000444A043 (prokaryotic type I DNA topoisomerase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A043)

HSP 1 Score: 116 bits (290), Expect = 2.280e-28
Identity = 52/84 (61.90%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   13 CGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            CGGEEF ATGL++ ERN+L +Y PYE+W+G+ +P+F +G EF+PSV  + EG T  P LL+E+DL+GLMD+ GIGTDATIA+HI
Sbjct:  432 CGGEEFYATGLIILERNFLNVY-PYEKWSGKELPDFEEGDEFMPSVCELREGVTSPPNLLTEADLVGLMDKNGIGTDATIAQHI 514
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A165QLH3_9AGAM (DNA topoisomerase n=1 Tax=Neolentinus lepideus HHB14362 ss-1 TaxID=1314782 RepID=A0A165QLH3_9AGAM)

HSP 1 Score: 116 bits (290), Expect = 2.590e-28
Identity = 53/88 (60.23%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            V   CGGEEF+ATGL+V ERN+L +Y PY++W+   IP+F +GQE +PSV  M EG+T +P LL+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  428 VEVTCGGEEFSATGLIVLERNYLEVY-PYDKWSSMEIPDFTEGQEIMPSVCEMREGQTTSPSLLTEADLVSLMDKNGIGTDATIAQHI 514
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A2A9NYR8_9AGAR (DNA topoisomerase n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NYR8_9AGAR)

HSP 1 Score: 115 bits (289), Expect = 3.520e-28
Identity = 50/84 (59.52%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   13 CGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            CGGEEF ATGL+V E+N+L++Y PY++W+G  +PEF +G+EF+PSV  + +G+T +P LL+E DL+ LMD+ GIGTDATIA+HI
Sbjct:  427 CGGEEFHATGLVVLEKNYLLVY-PYDKWSGHELPEFEEGEEFMPSVCELRDGQTSSPSLLTEGDLVSLMDKNGIGTDATIAQHI 509
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A5C3NBC1_9AGAM (DNA topoisomerase n=1 Tax=Heliocybe sulcata TaxID=5364 RepID=A0A5C3NBC1_9AGAM)

HSP 1 Score: 115 bits (289), Expect = 3.540e-28
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            V   CGGEEF+ATGL+V ERN+L +Y PY++W  + IP+F +GQ+ +PSV  M+EG+T +P LL+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  427 VEVTCGGEEFSATGLIVLERNYLEVY-PYDKWNSKQIPDFVEGQQLMPSVCEMKEGETTSPSLLTEADLVTLMDKNGIGTDATIAQHI 513
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A8H5BSQ3_9AGAR (DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BSQ3_9AGAR)

HSP 1 Score: 115 bits (287), Expect = 6.600e-28
Identity = 51/84 (60.71%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   13 CGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            CGGEEF+ATGL+V ERN+LV+Y  Y++WTG T+P+F +GQEF P+V  + +G+T  P  L+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  424 CGGEEFSATGLVVKERNYLVVYV-YDKWTGHTVPDFVEGQEFAPTVCEVRQGETTRPNYLTEADLVTLMDKNGIGTDATIAQHI 506
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BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A0C9XCQ7_9AGAR (DNA topoisomerase n=1 Tax=Laccaria amethystina LaAM-08-1 TaxID=1095629 RepID=A0A0C9XCQ7_9AGAR)

HSP 1 Score: 114 bits (286), Expect = 9.020e-28
Identity = 51/84 (60.71%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:   13 CGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            CGGEEFTATGL+V +RN+L++Y PY++W G T+P F +G+EF PSV  + EG+T  P  L+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  424 CGGEEFTATGLIVLQRNYLLVY-PYDKWIGHTVPNFQEGEEFDPSVCELREGQTSKPNYLTEADLVTLMDKNGIGTDATIAQHI 506
[Close]
BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Match: A0A0C2THH2_AMAMK (DNA topoisomerase n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2THH2_AMAMK)

HSP 1 Score: 114 bits (284), Expect = 1.660e-27
Identity = 52/88 (59.09%), Postives = 71/88 (80.68%), Query Frame = 1 
Query:    1 VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSVLVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI 264
            V  + GGEEF ATGL+V ERN+L++Y PY++WTG  +P F + QEF PS+ +++EGKT +P LL+E+DL+ LMD+ GIGTDATIA+HI
Sbjct:  423 VEVDYGGEEFFATGLVVLERNYLLVY-PYDKWTGNVLPPFEEDQEFRPSLCLLKEGKTSSPSLLTEADLVSLMDKNGIGTDATIAQHI 509
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1278.1700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP7_ECTSI5.760e-4789.77DNA topoisomerase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835YM61_9STRA1.140e-2968.29DNA topoisomerase (Fragment) n=1 Tax=Tribonema min... [more]
A0A067Q4C2_9AGAM1.580e-2960.23DNA topoisomerase n=1 Tax=Jaapia argillacea MUCL 3... [more]
UPI000444A0432.280e-2861.90prokaryotic type I DNA topoisomerase n=1 Tax=Stere... [more]
A0A165QLH3_9AGAM2.590e-2860.23DNA topoisomerase n=1 Tax=Neolentinus lepideus HHB... [more]
A0A2A9NYR8_9AGAR3.520e-2859.52DNA topoisomerase n=1 Tax=Amanita thiersii Skay404... [more]
A0A5C3NBC1_9AGAM3.540e-2859.09DNA topoisomerase n=1 Tax=Heliocybe sulcata TaxID=... [more]
A0A8H5BSQ3_9AGAR6.600e-2860.71DNA topoisomerase n=1 Tax=Psilocybe cf. subviscida... [more]
A0A0C9XCQ7_9AGAR9.020e-2860.71DNA topoisomerase n=1 Tax=Laccaria amethystina LaA... [more]
A0A0C2THH2_AMAMK1.660e-2759.09DNA topoisomerase n=1 Tax=Amanita muscaria (strain... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1278contigS-dermatodea_contig1278:16832..17381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue2.1e-39
Seed eggNOG ortholog2880.D7FUP7
Preferred nameTOP3A
KEGG koko:K03165
KEGG Pathwayko03440,ko03460,map03440,map03460
KEGG ModuleM00414
GOsGO:0000003,GO:0000278,GO:0000280,GO:0000712,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003916,GO:0003917,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006265,GO:0006281,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016043,GO:0016604,GO:0016605,GO:0016853,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1903046
EggNOG free text desc.DNA topoisomerase type I activity
EggNOG OGsCOG0550@1,KOG1956@2759
EC5.99.1.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.2689362-CDS-S-dermatodea_contig1278:16831..169871622924261.2689362-CDS-S-dermatodea_contig1278:16831..16987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1278 16832..16987 +
1694079132.9402335-CDS-S-dermatodea_contig1278:16831..169871694079132.9402335-CDS-S-dermatodea_contig1278:16831..16987Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1278 16832..16987 +
1622924261.2812579-CDS-S-dermatodea_contig1278:17273..173811622924261.2812579-CDS-S-dermatodea_contig1278:17273..17381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1278 17274..17381 +
1694079132.9582505-CDS-S-dermatodea_contig1278:17273..173811694079132.9582505-CDS-S-dermatodea_contig1278:17273..17381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1278 17274..17381 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1278.1700.1prot_S-dermatodea_contig1278.1700.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1278 16832..17381 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1278.1700.1

>prot_S-dermatodea_contig1278.1700.1 ID=prot_S-dermatodea_contig1278.1700.1|Name=mRNA_S-dermatodea_contig1278.1700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
VYANCGGEEFTATGLMVTERNWLVIYEPYERWTGRTIPEFFQGQEFVPSV
LVMEEGKTQAPLLLSESDLIGLMDQKGIGTDATIAEHI
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mRNA from alignment at S-dermatodea_contig1278:16832..17381+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1278.1700.1 ID=mRNA_S-dermatodea_contig1278.1700.1|Name=mRNA_S-dermatodea_contig1278.1700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=550bp|location=Sequence derived from alignment at S-dermatodea_contig1278:16832..17381+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTACGCGAACTGCGGAGGGGAAGAGTTTACGGCGACGGGTCTCATGGT
CACCGAGCGCAACTGGCTAGTGATCTACGAGCCCTACGAGCGTTGGACCG
GCCGGACAATACCCGAGTTTTTCCAGGGCCAAGAATTTGTCCCCAGCGTC
CTCGTGGTGGGTGTAGAAAATGGGGATAGGATTGGGGTGCGGCTGAGGGG
GCGATAGCCGCGCGTTGAGTTGGTGCGCGATCCGTTACTTGTTAGCATTA
GGTGCACGGCACTTAAGAGCTGCACGCCGCGCTGAGTTTTCTTGGAGCGC
TTATAACGTCGGGTTTCGTTTTTTTCCCCAATAGGAAGCCCCATCAAGAG
CTTGCTGATGATGTGTGTGTGAGTGTGTGTGTGTGTACTTTTGTTTTTAC
TTTTAATTTGGTGGGATCGTCGTCTTTGTGTCGTGTGAACAGATGGAGGA
AGGGAAGACGCAGGCTCCCCTGCTGCTTAGCGAGTCGGACCTGATCGGCC
TCATGGACCAGAAGGGCATCGGGACGGACGCCACGATCGCCGAGCACATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1278:16832..17381+

>mRNA_S-dermatodea_contig1278.1700.1 ID=mRNA_S-dermatodea_contig1278.1700.1|Name=mRNA_S-dermatodea_contig1278.1700.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig1278:16832..17381+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTACGCGAACTGCGGAGGGGAAGAGTTTACGGCGACGGGTCTCATGGT
CACCGAGCGCAACTGGCTAGTGATCTACGAGCCCTACGAGCGTTGGACCG
GCCGGACAATACCCGAGTTTTTCCAGGGCCAAGAATTTGTCCCCAGCGTC
CTCGTGGTTTACGCGAACTGCGGAGGGGAAGAGTTTACGGCGACGGGTCT
CATGGTCACCGAGCGCAACTGGCTAGTGATCTACGAGCCCTACGAGCGTT
GGACCGGCCGGACAATACCCGAGTTTTTCCAGGGCCAAGAATTTGTCCCC
AGCGTCCTCGTGATGGAGGAAGGGAAGACGCAGGCTCCCCTGCTGCTTAG
CGAGTCGGACCTGATCGGCCTCATGGACCAGAAGGGCATCGGGACGGACG
CCACGATCGCCGAGCACATCATGGAGGAAGGGAAGACGCAGGCTCCCCTG
CTGCTTAGCGAGTCGGACCTGATCGGCCTCATGGACCAGAAGGGCATCGG
GACGGACGCCACGATCGCCGAGCACATC
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