mRNA_S-dermatodea_contig890.16999.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig890.16999.1
Unique NamemRNA_S-dermatodea_contig890.16999.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A0B1TUF9_OESDE (Ankyrin repeat protein (Fragment) n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1TUF9_OESDE)

HSP 1 Score: 57.8 bits (138), Expect = 3.350e-9
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1 
Query:    1 LHAAAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLACFSFCK 231
            LH AA+ GHV+V    +  HGA+L AI + + TAL  A  + ++   + L+ LGA+ NAR+ KGQT LHLA   F K
Sbjct:   12 LHLAAQNGHVKVVNVLVQDHGASLEAITLDNQTALHFAARYGQLVVSQTLLALGANPNARDDKGQTPLHLAAEVFIK 88
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A1I8AAL3_9BILA (ANK_REP_REGION domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AAL3_9BILA)

HSP 1 Score: 55.8 bits (133), Expect = 2.940e-7
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 1 
Query:    1 LHAAAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLA 213
            LH AA+ GHV+V    +  HGA+L AI + + TAL  A    ++A  + L+ LGA+ NAR+ KGQT LHLA
Sbjct:  578 LHLAAQNGHVKVVNVLVQDHGASLEAITLDNQTALHFAARHGQLAVSQTLLALGANPNARDDKGQTPLHLA 648
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A3P7IYW0_TOXCA (Uncharacterized protein (Fragment) n=4 Tax=Toxocara canis TaxID=6265 RepID=A0A3P7IYW0_TOXCA)

HSP 1 Score: 53.1 bits (126), Expect = 3.520e-7
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   10 AAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLA 213
            AA+ GHV+V    +  HGAAL AI + + TAL  A    ++A  + L+ LGA+ NAR+ KGQT LHLA
Sbjct:    2 AAQNGHVKVVNLLVQDHGAALEAITLDNQTALHFAAKHGQLAVSQTLLALGANPNARDDKGQTPLHLA 69
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A0N4XMK7_NIPBR (ANK_REP_REGION domain-containing protein n=1 Tax=Nippostrongylus brasiliensis TaxID=27835 RepID=A0A0N4XMK7_NIPBR)

HSP 1 Score: 54.7 bits (130), Expect = 6.600e-7
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1 
Query:    1 LHAAAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLA 213
            LH AA+ GHV V    +  HGA+L AI + + TAL  +  + ++   + L+ LGA+ NAR+ KGQT LHLA
Sbjct:   14 LHLAAQNGHVRVVNVLVQDHGASLEAITLDNQTALHFSAKYGQLVVSQTLLALGANPNARDDKGQTPLHLA 84
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A1S3H287_LINUN (ankyrin-1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H287_LINUN)

HSP 1 Score: 48.9 bits (115), Expect = 7.880e-5
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   10 AAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLAC 216
            AAK+GH +  + AL  HGA  N++D  +N +L  AV    V   K+LI+ GADV+ +N K  +ALH+AC
Sbjct:  107 AAKKGH-KGNVTALLKHGANPNSLDADNNASLLFAVRGHHVDMAKSLIEKGADVDVKNNKQVSALHIAC 174
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BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Match: A0A366SBF5_9HYPO (Uncharacterized protein n=1 Tax=Fusarium coffeatum TaxID=231269 RepID=A0A366SBF5_9HYPO)

HSP 1 Score: 48.5 bits (114), Expect = 9.400e-5
Identity = 32/76 (42.11%), Postives = 43/76 (56.58%), Query Frame = 1 
Query:    1 LHAAAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKALIDLGADVNARNQKGQTALHLACFSFC 228
            LH AA  G     L ALA  GA +    V   TAL  A+ ++++  VKAL++LGAD+NA +  G+T LHL     C
Sbjct:  115 LHLAAYHGRAGN-LRALAACGADIECPTVSHRTALLDAIAYNRLPTVKALLELGADLNAVDSDGRTVLHLTASFAC 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig890.16999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A0B1TUF9_OESDE3.350e-945.45Ankyrin repeat protein (Fragment) n=1 Tax=Oesophag... [more]
A0A1I8AAL3_9BILA2.940e-747.89ANK_REP_REGION domain-containing protein n=1 Tax=S... [more]
A0A3P7IYW0_TOXCA3.520e-748.53Uncharacterized protein (Fragment) n=4 Tax=Toxocar... [more]
A0A0N4XMK7_NIPBR6.600e-745.07ANK_REP_REGION domain-containing protein n=1 Tax=N... [more]
A0A1S3H287_LINUN7.880e-544.93ankyrin-1 n=1 Tax=Lingula unguis TaxID=7574 RepID=... [more]
A0A366SBF5_9HYPO9.400e-542.11Uncharacterized protein n=1 Tax=Fusarium coffeatum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig890contigS-dermatodea_contig890:14018..14248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925372.2301645-CDS-S-dermatodea_contig890:14017..142481622925372.2301645-CDS-S-dermatodea_contig890:14017..14248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig890 14018..14248 -
1694079888.779381-CDS-S-dermatodea_contig890:14017..142481694079888.779381-CDS-S-dermatodea_contig890:14017..14248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig890 14018..14248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig890.16999.1prot_S-dermatodea_contig890.16999.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig890 14018..14248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig890.16999.1

>prot_S-dermatodea_contig890.16999.1 ID=prot_S-dermatodea_contig890.16999.1|Name=mRNA_S-dermatodea_contig890.16999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=77bp
LHAAAKRGHVEVFLEALALHGAALNAIDVHSNTALATAVVFDKVAAVKAL
IDLGADVNARNQKGQTALHLACFSFCK
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mRNA from alignment at S-dermatodea_contig890:14018..14248-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig890.16999.1 ID=mRNA_S-dermatodea_contig890.16999.1|Name=mRNA_S-dermatodea_contig890.16999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at S-dermatodea_contig890:14018..14248- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCACGCCGCGGCTAAGCGAGGACACGTGGAAGTCTTTTTGGAAGCATT
AGCCCTGCATGGAGCGGCCCTGAATGCTATCGATGTCCACAGTAACACTG
CTTTGGCCACAGCTGTTGTGTTTGATAAGGTTGCCGCTGTAAAGGCCCTC
ATCGACCTGGGAGCTGACGTGAATGCCCGAAACCAGAAGGGTCAAACTGC
TCTTCACCTCGCTTGTTTTAGCTTCTGCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig890:14018..14248-

>mRNA_S-dermatodea_contig890.16999.1 ID=mRNA_S-dermatodea_contig890.16999.1|Name=mRNA_S-dermatodea_contig890.16999.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at S-dermatodea_contig890:14018..14248- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCACGCCGCGGCTAAGCGAGGACACGTGGAAGTCTTTTTGGAAGCATT
AGCCCTGCATGGAGCGGCCCTGAATGCTATCGATGTCCACAGTAACACTG
CTTTGGCCACAGCTGTTGTGTTTGATAAGGTTGCCGCTGTAAAGGCCCTC
ATCGACCTGGGAGCTGACGTGAATGCCCGAAACCAGAAGGGTCAAACTGC
TCTTCACCTCGCTTGTTTTAGCTTCTGCAAGCTGCACGCCGCGGCTAAGC
GAGGACACGTGGAAGTCTTTTTGGAAGCATTAGCCCTGCATGGAGCGGCC
CTGAATGCTATCGATGTCCACAGTAACACTGCTTTGGCCACAGCTGTTGT
GTTTGATAAGGTTGCCGCTGTAAAGGCCCTCATCGACCTGGGAGCTGACG
TGAATGCCCGAAACCAGAAGGGTCAAACTGCTCTTCACCTCGCTTGTTTT
AGCTTCTGCAAG
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