mRNA_S-dermatodea_contig12778.1698.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12778.1698.1
Unique NamemRNA_S-dermatodea_contig12778.1698.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12778.1698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12778contigS-dermatodea_contig12778:3102..6329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size1310
Cds size1182
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12778.1698.1prot_S-dermatodea_contig12778.1698.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12778 3112..5146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.1271505-UTR-S-dermatodea_contig12778:3101..31111622924261.1271505-UTR-S-dermatodea_contig12778:3101..3111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 3102..3111 -
1694079132.82381-UTR-S-dermatodea_contig12778:3101..31111694079132.82381-UTR-S-dermatodea_contig12778:3101..3111Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 3102..3111 -
1622924261.1731422-UTR-S-dermatodea_contig12778:5146..51921622924261.1731422-UTR-S-dermatodea_contig12778:5146..5192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 5147..5192 -
1694079132.8905404-UTR-S-dermatodea_contig12778:5146..51921694079132.8905404-UTR-S-dermatodea_contig12778:5146..5192Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 5147..5192 -
1622924261.1898913-UTR-S-dermatodea_contig12778:6257..63291622924261.1898913-UTR-S-dermatodea_contig12778:6257..6329Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 6258..6329 -
1694079132.9014635-UTR-S-dermatodea_contig12778:6257..63291694079132.9014635-UTR-S-dermatodea_contig12778:6257..6329Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12778 6258..6329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.1366606-CDS-S-dermatodea_contig12778:3111..36231622924261.1366606-CDS-S-dermatodea_contig12778:3111..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 3112..3623 -
1694079132.8339393-CDS-S-dermatodea_contig12778:3111..36231694079132.8339393-CDS-S-dermatodea_contig12778:3111..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 3112..3623 -
1622924261.151605-CDS-S-dermatodea_contig12778:3913..41071622924261.151605-CDS-S-dermatodea_contig12778:3913..4107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 3914..4107 -
1694079132.8502676-CDS-S-dermatodea_contig12778:3913..41071694079132.8502676-CDS-S-dermatodea_contig12778:3913..4107Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 3914..4107 -
1622924261.160642-CDS-S-dermatodea_contig12778:4670..51461622924261.160642-CDS-S-dermatodea_contig12778:4670..5146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 4671..5146 -
1694079132.8682423-CDS-S-dermatodea_contig12778:4670..51461694079132.8682423-CDS-S-dermatodea_contig12778:4670..5146Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12778 4671..5146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12778.1698.1

>prot_S-dermatodea_contig12778.1698.1 ID=prot_S-dermatodea_contig12778.1698.1|Name=mRNA_S-dermatodea_contig12778.1698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=394bp
MPSGLGWCITALVAWAAEGKKGCQTFMAPSVAGDLGALQQLPENHFSCVD
GAFLMAVKVRWQSSMVLSTKWQCSDGTESELVQDRRFSFDSSDTSSSGTA
LFPFAITAVESEKADNVLTGSYDNPVFESDFVGKIYFEGYDTTTSGSSKG
GLLRIGPFGEESSYQKHDTAATTSSRCPTESYATGVHIWMVEESPARVAA
VQLVCAERTPTCSPWNVEENGVLDSHPGSSVPSTRGHADAASTATRPSDK
VASVAPLMHFPRTLSLPLAGTRTEPGAFEGGMPEANSQSDGGNGGNVASS
KGAVREGGPFLRERKMQEETEEHDREHGGSFEDRAVIIGLGVGVGLILAA
LLGVFLRSCLPVDKDEPIRIDGSATDEVVVVVLGTTVGREAGK*
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mRNA from alignment at S-dermatodea_contig12778:3102..6329-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12778.1698.1 ID=mRNA_S-dermatodea_contig12778.1698.1|Name=mRNA_S-dermatodea_contig12778.1698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3228bp|location=Sequence derived from alignment at S-dermatodea_contig12778:3102..6329- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAGGACGGCGGGCGAGAAGGGAGGGACAGAAGGGAGGGACAGCCTATT
AGCGCAAGCTCCGACCACGTTGGTGAGAGCTGACAGCCTGGGTGACGCAA
GCTATACAATAGTTTGGACGAAAGGAAACGCTTTTTTTGCTGCCTATGCG
TCTCTCGCTTCTTGCTTACACAATACGCCGTCCCGTGACGATGCATGCCG
CGGGGGGCGGTGAGCGTGCGATGTACGGCGCGAGATTTACTGGCGCAAAT
AAATCCTTGTAGGTAGCAAGACAAGCGGTGACAATCCCCCCCACAGGTGT
CTGCTGCGTGCGAACTTTATTCCAATCCAATCGATCATCTATAGTTCGGC
CGAGTCGGCCGGTTTGTAACAAGCTCCCGGCAGAGCTTGCCTTTGACTCC
GAGCCACAAAACACCGACAGCGCTCCTGCGCGTCGAAAATCTTCAGACAT
GTGGGCTGTGCTCTATTTGAGTCCTGAAGCACCCGGAACCTACTCTTTCT
GTAGCGTCTGCCCGGGTTTAAGTGTGTAGATGTGGATGATTTGCCGCCAT
ATCCTATCAAAGCATCTGCGACGGAATAATTATTTTTTGAAGTTATTCTT
TTCCAAGGCCACATTGAGCATAGAGCCAATACAGCAGCTGTTATGATAGA
AGCTGGTCTACGACCAACAGCCAGTGTATCTTCTCACGCCGTGGGGAAGC
TGTGTTCCTGCGTGCTCATGGACAGCGCCTGCCTGCTGGTTGGAATTGAG
AGCCTAGTCCATGCAGCGTTTCTATCATTTAGTGAATGATGTGCGGTGCT
GCCACTTTCGCTTTGTGCCGATACTCGCTCGGCGGAATGCCGCTCATTTG
CTGCCGGGATGAGAGGCTTGCCACGGGATGGTAGCCAACGTTTGTATCTT
CGCCGGTATATCTCCACCTCTGAACAGAGTGGTGACAACCCTCTAAGCGC
ATGTTGTACGCACCCCACAGCTCAACGACTTGCAACTTTGTGACACCTTG
CTTGATGTACCACAATAACGCAAGCCATGCTCTCACGTGCAGCAAGCAGA
GGTTTGTCAAGTATACTGCACTACCCAACCGACGCTTGTTTAACACAGAC
ACACCCTCAAACTCTTCATCCGGACTGGTCCACGCAGGCTGCATTCTCCC
TCCGGGAGCGCGGTGTCTCGACAAACAGTTACCATGCCGTCCGGGCTCGG
ATGGTGTATTACGGCGCTGGTAGCTTGGGCCGCTGAAGGTAAAAAAGGGT
GCCAAACCTTCATGGCCCCATCCGTCGCGGGAGACCTGGGCGCGCTACAA
CAGCTACCGGAGAACCATTTTTCTTGCGTCGACGGAGCTTTCCTGATGGC
CGTGAAGGTACGCTGGCAATCCTCAATGGTGTTGTCGACGAAGTGGCAAT
GTTCGGACGGAACGGAGTCTGAGCTCGTCCAAGACCGTCGTTTCTCCTTC
GACAGTTCGGACACGTCTAGTAGTGGCACGGCTCTCTTTCCCTTCGCCAT
CACTGCTGTGGAGAGCGAGAAAGCCGACAACGTGCTGACCGGGTCGTACG
ACAATCCAGTGTTTGAGTCGGACTTCGTGGGGAAAATTTACTTCGAAGGC
TATGACACAACCACTTCCGGGTCTTCGAAGGGCGGTTTATTGCGGATCGG
ACCGTTCGGGTAAGGCTGCCACCTATCTGCCAAAGTATGTGTTAATTAAG
GATTGATTGATTGAGTGGTTGATTGATTATCACACTTACAGCCGACCGGC
ACACCAATGGTTGCCCGATCCCGCTCGTGGTCGGATGGTCAATCGAGCGA
TCGAAAAAAACCCTTCGTAATTTCCTGTATAGTACCAGGTACATATTAAG
AAGGCATAGACACAAGCTCTCGGAAACAGAGGGGGCATACCTCGGAACTT
GGGCCTGCTAATAAAATATAATAAAAATCCTTGCCTCCCTTTTTGGTTAG
GTGTGCTTTTTCCCTGTGAAAGAGGGCTATCGGACTTTCAGAGCGCACTG
CACAGCTGGGGGACCGGTCTATTGCGTTTCCATGTTCGGAGTGTTTTCCA
AAATGCACAAGGACCATTTTGTTTGCCTCTCTATTGCTACAAAGTAAACC
GGTCCTTTGGGAACTACACCAAACGTCCACCGTCATCCGAGATCAACACT
GTAACGTTAATCATCCGCCGCGCTACGTCCCTCGCGCACCTTGCCCCGCA
TTTGTGGCATTGTTTGTTTCAGTGAGGAAAGTTCGTATCAGAAGCACGAC
ACCGCAGCGACAACGTCGTCCCGCTGTCCAACCGAATCCTACGCCACGGG
GGTGCATATATGGATGGTCGAAGAATCCCCTGCCAGAGTGGCGGCCGTGC
AGCTGGTGTGCGCGGAGAGGACCCCGACTTGTTCTCCTTGGAATGTTGAG
GAAAACGGCGTCCTTGGTACGAGTTGTTGTTGTGGCCATCAAAATCAACG
TTTACGCGCTCGTGTCTGCTGAGCACGAGCCCGAGGTGCTGCTGTGTCGG
CCTGTGACGTGTACCCTTTGAAAAGCACATTGTTTCTGATTTGGTCGTCA
TGATGGTTCGTTCAGGTCCCATAACGTTTCCTCAGCGTCAAACGTCAGCG
TATCATACCATCGACCACGGTTTCGAAAAAATTGAGCTCAAACGCCGCTC
GTAAATTCGTCGATACCCCCCACCCCCCCCGTTTTTTTTGCTTTGCAATA
TACCAGATTCTCATCCGGGTTCATCAGTGCCCTCAACCCGTGGACATGCA
GATGCTGCTAGTACAGCTACCCGGCCCTCGGACAAAGTCGCTTCGGTAGC
ACCGCTGATGCATTTCCCGAGAACCTTGTCGCTACCCTTGGCTGGAACGC
GCACCGAGCCTGGCGCCTTCGAAGGTGGAATGCCTGAGGCCAACTCACAA
TCCGACGGCGGCAATGGCGGCAATGTTGCCAGCAGCAAAGGCGCAGTGAG
GGAAGGCGGACCGTTCCTCCGTGAGCGGAAAATGCAAGAGGAAACCGAAG
AGCACGACCGAGAGCACGGGGGGTCGTTCGAGGACAGGGCGGTGATCATC
GGGCTCGGAGTTGGCGTAGGGCTGATCTTGGCAGCGTTGCTCGGCGTGTT
CCTGCGGAGTTGCCTCCCCGTCGACAAAGACGAGCCGATACGGATTGATG
GAAGCGCTACCGACGAGGTCGTCGTTGTGGTGCTCGGGACCACTGTTGGC
AGAGAAGCAGGAAAATGAAGACAGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12778:3102..6329-

>mRNA_S-dermatodea_contig12778.1698.1 ID=mRNA_S-dermatodea_contig12778.1698.1|Name=mRNA_S-dermatodea_contig12778.1698.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2364bp|location=Sequence derived from alignment at S-dermatodea_contig12778:3102..6329- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGTCCGGGCTCGGATGGTGTATTACGGCGCTGGTAGCTTGGGCCGC
TGAAGGTAAAAAAGGGTGCCAAACCTTCATGGCCCCATCCGTCGCGGGAG
ACCTGGGCGCGCTACAACAGCTACCGGAGAACCATTTTTCTTGCGTCGAC
GGAGCTTTCCTGATGGCCGTGAAGGTACGCTGGCAATCCTCAATGGTGTT
GTCGACGAAGTGGCAATGTTCGGACGGAACGGAGTCTGAGCTCGTCCAAG
ACCGTCGTTTCTCCTTCGACAGTTCGGACACGTCTAGTAGTGGCACGGCT
CTCTTTCCCTTCGCCATCACTGCTGTGGAGAGCGAGAAAGCCGACAACGT
GCTGACCGGGTCGTACGACAATCCAGTGTTTGAGTCGGACTTCGTGGGGA
AAATTTACTTCGAAGGCTATGACACAACCACTTCCGGGTCTTCGAAGGGC
GGTTTATTGCGGATCGGACCGTTCGGATGCCGTCCGGGCTCGGATGGTGT
ATTACGGCGCTGGTAGCTTGGGCCGCTGAAGGTAAAAAAGGGTGCCAAAC
CTTCATGGCCCCATCCGTCGCGGGAGACCTGGGCGCGCTACAACAGCTAC
CGGAGAACCATTTTTCTTGCGTCGACGGAGCTTTCCTGATGGCCGTGAAG
GTACGCTGGCAATCCTCAATGGTGTTGTCGACGAAGTGGCAATGTTCGGA
CGGAACGGAGTCTGAGCTCGTCCAAGACCGTCGTTTCTCCTTCGACAGTT
CGGACACGTCTAGTAGTGGCACGGCTCTCTTTCCCTTCGCCATCACTGCT
GTGGAGAGCGAGAAAGCCGACAACGTGCTGACCGGGTCGTACGACAATCC
AGTGTTTGAGTCGGACTTCGTGGGGAAAATTTACTTCGAAGGCTATGACA
CAACCACTTCCGGGTCTTCGAAGGGCGGTTTATTGCGGATCGGACCGTTC
GGTGAGGAAAGTTCGTATCAGAAGCACGACACCGCAGCGACAACGTCGTC
CCGCTGTCCAACCGAATCCTACGCCACGGGGGTGCATATATGGATGGTCG
AAGAATCCCCTGCCAGAGTGGCGGCCGTGCAGCTGGTGTGCGCGGAGAGG
ACCCCGACTTGTTCTCCTTGGAATGTTGAGGAAAACGGCGTCCTTGTGAG
GAAAGTTCGTATCAGAAGCACGACACCGCAGCGACAACGTCGTCCCGCTG
TCCAACCGAATCCTACGCCACGGGGGTGCATATATGGATGGTCGAAGAAT
CCCCTGCCAGAGTGGCGGCCGTGCAGCTGGTGTGCGCGGAGAGGACCCCG
ACTTGTTCTCCTTGGAATGTTGAGGAAAACGGCGTCCTTGATTCTCATCC
GGGTTCATCAGTGCCCTCAACCCGTGGACATGCAGATGCTGCTAGTACAG
CTACCCGGCCCTCGGACAAAGTCGCTTCGGTAGCACCGCTGATGCATTTC
CCGAGAACCTTGTCGCTACCCTTGGCTGGAACGCGCACCGAGCCTGGCGC
CTTCGAAGGTGGAATGCCTGAGGCCAACTCACAATCCGACGGCGGCAATG
GCGGCAATGTTGCCAGCAGCAAAGGCGCAGTGAGGGAAGGCGGACCGTTC
CTCCGTGAGCGGAAAATGCAAGAGGAAACCGAAGAGCACGACCGAGAGCA
CGGGGGGTCGTTCGAGGACAGGGCGGTGATCATCGGGCTCGGAGTTGGCG
TAGGGCTGATCTTGGCAGCGTTGCTCGGCGTGTTCCTGCGGAGTTGCCTC
CCCGTCGACAAAGACGAGCCGATACGGATTGATGGAAGCGCTACCGACGA
GGTCGTCGTTGTGGTGCTCGGGACCACTGTTGGCAGAGAAGCAGGAAAAT
GAATTCTCATCCGGGTTCATCAGTGCCCTCAACCCGTGGACATGCAGATG
CTGCTAGTACAGCTACCCGGCCCTCGGACAAAGTCGCTTCGGTAGCACCG
CTGATGCATTTCCCGAGAACCTTGTCGCTACCCTTGGCTGGAACGCGCAC
CGAGCCTGGCGCCTTCGAAGGTGGAATGCCTGAGGCCAACTCACAATCCG
ACGGCGGCAATGGCGGCAATGTTGCCAGCAGCAAAGGCGCAGTGAGGGAA
GGCGGACCGTTCCTCCGTGAGCGGAAAATGCAAGAGGAAACCGAAGAGCA
CGACCGAGAGCACGGGGGGTCGTTCGAGGACAGGGCGGTGATCATCGGGC
TCGGAGTTGGCGTAGGGCTGATCTTGGCAGCGTTGCTCGGCGTGTTCCTG
CGGAGTTGCCTCCCCGTCGACAAAGACGAGCCGATACGGATTGATGGAAG
CGCTACCGACGAGGTCGTCGTTGTGGTGCTCGGGACCACTGTTGGCAGAG
AAGCAGGAAAATGA
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