mRNA_S-dermatodea_contig88467.16968.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig88467.16968.1
Unique NamemRNA_S-dermatodea_contig88467.16968.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: F0Y4F3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F3_AURAN)

HSP 1 Score: 113 bits (282), Expect = 1.930e-26
Identity = 60/133 (45.11%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    1 FCVAVSDAIFILVPGSREEVIKHLLFLGMPAERISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHEMKYVRKGYLSDVPGLSAYLVVGKYKSGLEKRATLRSSSQQEG 399
            FC A SDA++ +  G  + +  HL   GM  ++I ++  +Y R+  R  +P+P  L R LT VY FFKGL D  TG+ FF AGH+KRF +EM+YVRKGYLSD P +  Y+   K  +G      LR+SS  EG
Sbjct: 3294 FCTATSDAVYKIREGELDRLNAHLRRRGMAEDQIKKIPRRYVRRMVRRFIPEPDVLERDLTKVYDFFKGLKDAETGQAFFRAGHKKRFDNEMRYVRKGYLSDHPDVELYVPKKKLATGFVVYRCLRTSSPLEG 3426          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: A0A0M0K3G0_9EUKA (R3H domain-containing protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3G0_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 3.130e-23
Identity = 65/143 (45.45%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    1 FCVAVSDAIFILVPGSREEVIKHLLFL---GMPAER-------ISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHEMKYVRKGYLSDVPGLSAYLVVGKYKSGLEKRATLRSSSQQEG 399
            FC+A SDAIF++  G RE V  HL  L   G  AE        I RV  +Y R+   Y +P+P  L R L  VY FFK L DP TGR FF+AGHQ+R   E++YV  G+LSD P +  Y      K+G      LRSSS  EG
Sbjct:  786 FCIASSDAIFVVREGQRERVKAHLRKLFKQGEGAEEQKRVDSLILRVKRRYWRRHCEYTIPEPRVLVRALLSVYLFFKDLDDPETGRPFFSAGHQQRCITELQYVAYGWLSDHPKIPLYRAGRTLKTGFVLSRCLRSSSALEG 928          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: K5XLG6_AGABU (Uncharacterized protein n=1 Tax=Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) TaxID=597362 RepID=K5XLG6_AGABU)

HSP 1 Score: 55.8 bits (133), Expect = 2.140e-6
Identity = 32/104 (30.77%), Postives = 56/104 (53.85%), Query Frame = 1
Query:   94 ERISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHEMKYVRKGYLSDVPGLSAYLVVG--KYKSGLEKRATLRSSSQQEG 399
            E +   S +++R R R+ +P P  L+  +  ++  +  L+DPTT +  F+A   K   + ++ +RKG++SD PG+S Y  +G  K   GL      R ++  EG
Sbjct:  977 EELRNSSPEWTRARCRHTIPPPHILYPLVAKLFQTYGPLVDPTTKQPLFSASTWKVALNVLELIRKGFISDPPGISLYTRIGTDKKAGGLPLYRCARGTNATEG 1080          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: K5XE21_AGABU (NACHT domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) TaxID=597362 RepID=K5XE21_AGABU)

HSP 1 Score: 55.8 bits (133), Expect = 2.200e-6
Identity = 33/103 (32.04%), Postives = 54/103 (52.43%), Query Frame = 1
Query:   97 RISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHE-MKYVRKGYLSDVPGLSAYLVVG-KYKSGLEKRATLRSSSQQEG 399
            R+   S ++ R+R R+ VP P  L+  +  V+C +  L+DP T +  F+   Q +     +  +RKG++SD PG+  Y  VG   K+GL      R ++  EG
Sbjct:  889 RLRNSSPEWIRKRCRHTVPPPHILYPLVRKVFCTYGPLVDPVTKQRLFSGKSQWKMAQNILDLIRKGFMSDPPGIPLYTQVGIDKKTGLPMYRCARGTNATEG 991          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: K5WZE7_AGABU (F-box domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii (strain JB137-S8 / ATCC MYA-4627 / FGSC 10392) TaxID=597362 RepID=K5WZE7_AGABU)

HSP 1 Score: 54.7 bits (130), Expect = 5.250e-6
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 1
Query:  121 YSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHEMKYVRKGYLSDVPGLSAYLVVGK-YKSGLEKRATLRSSSQQEG 399
            ++R R R+++P P  L+  +  V+  +  LIDP T +  F+A   K  ++ ++ VRKG++SD PG+S Y  +G   K+GL      R ++  EG
Sbjct:   56 WTRARCRHIIPPPHLLYPLVAKVFQTYGPLIDPITKQPLFSASAWKIASNILELVRKGFVSDPPGISLYTRIGTDKKAGLPIYRCARGTNATEG 149          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: A0A8H7C966_AGABI (3'-5' exonuclease domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C966_AGABI)

HSP 1 Score: 54.3 bits (129), Expect = 7.350e-6
Identity = 30/89 (33.71%), Postives = 49/89 (55.06%), Query Frame = 1
Query:   97 RISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHE-MKYVRKGYLSDVPGLSAYLVVG-KYKSGL 357
            R+   S ++ R+R R+ VP P  L+  +  V+C +  L+DP T +  F+   Q +     +  +RKG++SD PG+  Y  VG   K+GL
Sbjct: 1038 RLRNSSPEWIRKRCRHTVPPPHILYPLVQKVFCTYGPLVDPVTKQRLFSGKSQWKMAQNILDLIRKGFMSDPPGIPLYTQVGIDKKTGL 1126          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: A0A8H7F4D6_AGABI (Uncharacterized protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7F4D6_AGABI)

HSP 1 Score: 53.1 bits (126), Expect = 1.560e-5
Identity = 30/104 (28.85%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   94 ERISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHE-MKYVRKGYLSDVPGLSAYLVVGKYK-SGLEKRATLRSSSQQEG 399
            E++   S ++ R+R R+ +P P  L+  +  V+  +  ++DPTT +  F++  Q +     ++ +R+G++SD PG+S Y   G  K +GL     +R ++  EG
Sbjct:  134 EKLRNASPEWIRKRCRHTIPPPHILYPLVRKVFSTYGPIVDPTTKQPLFSSNSQWKMARNILELIRRGFVSDPPGISLYTQFGIDKQTGLPMYRCIRGTNTIEG 237          
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Match: A0A8H7C3M8_AGABI (3'-5' exonuclease domain-containing protein n=1 Tax=Agaricus bisporus var. burnettii TaxID=192524 RepID=A0A8H7C3M8_AGABI)

HSP 1 Score: 53.1 bits (126), Expect = 1.860e-5
Identity = 30/104 (28.85%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   94 ERISRVSCKYSRQRQRYMVPDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHE-MKYVRKGYLSDVPGLSAYLVVGKYK-SGLEKRATLRSSSQQEG 399
            E++   S ++ R+R R+ +P P  L+  +  V+  +  ++DPTT +  F++  Q +     ++ +R+G++SD PG+S Y   G  K +GL     +R ++  EG
Sbjct: 1010 EKLHNASPEWIRKRCRHTIPPPHILYPLVRKVFSTYGPIVDPTTKQPLFSSNSQWKMARNILELIRRGFVSDPPGISLYTQFGIDKQTGLPMYRCIRGTNTIEG 1113          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig88467.16968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
F0Y4F3_AURAN1.930e-2645.11Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A0M0K3G0_9EUKA3.130e-2345.45R3H domain-containing protein (Fragment) n=1 Tax=C... [more]
K5XLG6_AGABU2.140e-630.77Uncharacterized protein n=1 Tax=Agaricus bisporus ... [more]
K5XE21_AGABU2.200e-632.04NACHT domain-containing protein n=1 Tax=Agaricus b... [more]
K5WZE7_AGABU5.250e-634.04F-box domain-containing protein n=1 Tax=Agaricus b... [more]
A0A8H7C966_AGABI7.350e-633.713'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A8H7F4D6_AGABI1.560e-528.85Uncharacterized protein n=1 Tax=Agaricus bisporus ... [more]
A0A8H7C3M8_AGABI1.860e-528.853'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig88467contigS-dermatodea_contig88467:214..612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue5.4e-23
Seed eggNOG ortholog44056.XP_009035203.1
KEGG koko:K20347,ko:K20777
KEGG TC9.B.188.1.2
EggNOG free text desc.protein transport
EggNOG OGsCOG0666@1,KOG1692@1,KOG1692@2759,KOG2615@1,KOG2615@2759,KOG4177@2759,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925369.7078424-CDS-S-dermatodea_contig88467:213..6121622925369.7078424-CDS-S-dermatodea_contig88467:213..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88467 214..612 +
1694079886.933813-CDS-S-dermatodea_contig88467:213..6121694079886.933813-CDS-S-dermatodea_contig88467:213..612Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig88467 214..612 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig88467.16968.1prot_S-dermatodea_contig88467.16968.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig88467 214..612 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig88467.16968.1

>prot_S-dermatodea_contig88467.16968.1 ID=prot_S-dermatodea_contig88467.16968.1|Name=mRNA_S-dermatodea_contig88467.16968.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
FCVAVSDAIFILVPGSREEVIKHLLFLGMPAERISRVSCKYSRQRQRYMV
PDPATLFRRLTDVYCFFKGLIDPTTGRNFFNAGHQKRFTHEMKYVRKGYL
SDVPGLSAYLVVGKYKSGLEKRATLRSSSQQEG
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mRNA from alignment at S-dermatodea_contig88467:214..612+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig88467.16968.1 ID=mRNA_S-dermatodea_contig88467.16968.1|Name=mRNA_S-dermatodea_contig88467.16968.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=399bp|location=Sequence derived from alignment at S-dermatodea_contig88467:214..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGTGTGGCCGTGAGCGATGCCATCTTCATATTGGTCCCTGGATCACG GGAGGAGGTCATCAAGCACCTGCTTTTTCTCGGCATGCCTGCTGAGAGGA TTAGCCGGGTGTCTTGCAAGTACTCCCGCCAGCGTCAGAGGTACATGGTC CCGGACCCTGCCACGCTGTTTCGGCGTTTGACGGACGTTTACTGCTTCTT CAAGGGCCTGATCGATCCCACCACGGGCAGGAACTTCTTCAACGCCGGTC ACCAGAAGCGGTTCACTCACGAGATGAAGTACGTAAGGAAGGGATACCTT TCCGACGTGCCCGGTCTAAGTGCGTACCTGGTGGTCGGCAAGTATAAGAG TGGTCTAGAGAAACGGGCGACCCTGCGGTCGTCTTCGCAGCAAGAGGGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig88467:214..612+

>mRNA_S-dermatodea_contig88467.16968.1 ID=mRNA_S-dermatodea_contig88467.16968.1|Name=mRNA_S-dermatodea_contig88467.16968.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig88467:214..612+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCTGTGTGGCCGTGAGCGATGCCATCTTCATATTGGTCCCTGGATCACG
GGAGGAGGTCATCAAGCACCTGCTTTTTCTCGGCATGCCTGCTGAGAGGA
TTAGCCGGGTGTCTTGCAAGTACTCCCGCCAGCGTCAGAGGTACATGGTC
CCGGACCCTGCCACGCTGTTTCGGCGTTTGACGGACGTTTACTGCTTCTT
CAAGGGCCTGATCGATCCCACCACGGGCAGGAACTTCTTCAACGCCGGTC
ACCAGAAGCGGTTCACTCACGAGATGAAGTACGTAAGGAAGGGATACCTT
TCCGACGTGCCCGGTCTAAGTGCGTACCTGGTGGTCGGCAAGTATAAGAG
TGGTCTAGAGAAACGGGCGACCCTGCGGTCGTCTTCGCAGCAAGAGGGTT
TCTGTGTGGCCGTGAGCGATGCCATCTTCATATTGGTCCCTGGATCACGG
GAGGAGGTCATCAAGCACCTGCTTTTTCTCGGCATGCCTGCTGAGAGGAT
TAGCCGGGTGTCTTGCAAGTACTCCCGCCAGCGTCAGAGGTACATGGTCC
CGGACCCTGCCACGCTGTTTCGGCGTTTGACGGACGTTTACTGCTTCTTC
AAGGGCCTGATCGATCCCACCACGGGCAGGAACTTCTTCAACGCCGGTCA
CCAGAAGCGGTTCACTCACGAGATGAAGTACGTAAGGAAGGGATACCTTT
CCGACGTGCCCGGTCTAAGTGCGTACCTGGTGGTCGGCAAGTATAAGAGT
GGTCTAGAGAAACGGGCGACCCTGCGGTCGTCTTCGCAGCAAGAGGGT
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