mRNA_S-dermatodea_contig12774.1696.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12774.1696.1
Unique NamemRNA_S-dermatodea_contig12774.1696.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12774.1696.1 vs. uniprot
Match: D8LHW2_ECTSI (HP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHW2_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 1.390e-21
Identity = 76/178 (42.70%), Postives = 95/178 (53.37%), Query Frame = -1 
Query:   59 GGDDISVMMARAAARIEALPQRDRDRLAELDRSS----GGG------------GFSGRWDGESAGDSDASSP-------AVFVPLVR------------PLVRVGWSRGGGAAGGTPCRFRRLAGLGR-DWPRGVDPARREEWLCSFEFEAVFSMPFAAYRELPAWKKVILKREFCLF 484
            G D  S ++  AA RI ALP ++R  LAELDR+S    G G            G     + ++  +   SSP       A   P ++            PL+RVG S GG   G TP R+RRL GL R  WP  V+PARREEWLC  EFEAVF+M F+ +R LP+WK+V LKRE  LF
Sbjct:  153 GSDSSSQLLLAAANRIYALPAQERSLLAELDRASDVDEGEGXXXXXXXFVDDTGVVVAANVDNTNEGVISSPQGGHEGGAPPSPSLQGDGNPARASAEPPLLRVG-SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 329
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BLAST of mRNA_S-dermatodea_contig12774.1696.1 vs. uniprot
Match: A0A6H5L198_9PHAE (HP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L198_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.810e-21
Identity = 74/177 (41.81%), Postives = 87/177 (49.15%), Query Frame = -1 
Query:   59 GGDDISVMMARAAARIEALPQRDRDRLAELDRSSG----------------------------------GGGFSGRWDGESAGDSDASSPAVFVPLVRPLVRVGWSRGGGAAGGTPCRFRRLAGLGR-DWPRGVDPARREEWLCSFEFEAVFSMPFAAYRELPAWKKVILKREFCLF 484
            G D  S ++  AA RI ALP ++R  L ELDR+S                                   GG   G     S      SS A   P   P +RVG S GG   G TP R+RRL GL R  WP  V+PARREEWLC  EFEAVF+M F+ +R LP+WK+V LKRE  LF
Sbjct:  515 GSDSSSQLLLAAANRISALPAQERSLLEELDRASDVEEGEGDXXXXXXXXXFVDDTGVVVAANGDKTNEGGHEDGAPPSPSLQGDGTSSRASAEP---PFLRVG-SGGGDGGGTTPFRYRRLMGLSRRGWPSCVNPARREEWLCPVEFEAVFAMSFSEFRALPSWKRVALKRELLLF 687
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12774.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHW2_ECTSI1.390e-2142.70HP domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5L198_9PHAE5.810e-2141.81HP domain-containing protein n=1 Tax=Ectocarpus sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12774contigS-dermatodea_contig12774:3489..4707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1219
Cds size621
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12774.1696.1prot_S-dermatodea_contig12774.1696.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12774 3499..4119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.0442758-UTR-S-dermatodea_contig12774:3488..34981622924261.0442758-UTR-S-dermatodea_contig12774:3488..3498Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12774 3489..3498 +
1694079132.7740617-UTR-S-dermatodea_contig12774:3488..34981694079132.7740617-UTR-S-dermatodea_contig12774:3488..3498Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12774 3489..3498 +
1622924261.0686982-UTR-S-dermatodea_contig12774:4119..47071622924261.0686982-UTR-S-dermatodea_contig12774:4119..4707Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12774 4120..4707 +
1694079132.7970488-UTR-S-dermatodea_contig12774:4119..47071694079132.7970488-UTR-S-dermatodea_contig12774:4119..4707Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12774 4120..4707 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924261.056697-CDS-S-dermatodea_contig12774:3498..41191622924261.056697-CDS-S-dermatodea_contig12774:3498..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12774 3499..4119 +
1694079132.7829883-CDS-S-dermatodea_contig12774:3498..41191694079132.7829883-CDS-S-dermatodea_contig12774:3498..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12774 3499..4119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12774.1696.1

>prot_S-dermatodea_contig12774.1696.1 ID=prot_S-dermatodea_contig12774.1696.1|Name=mRNA_S-dermatodea_contig12774.1696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=207bp
MSCAAQRAADRALRGLEQAELALENYLLPRRQLPVRGERHREHGFKFERT
QPLLPPRGVDSARPVATEPGQTPETARSSPGSTPAPRPAHAHEGADEGNE
NGRRRCVAVSCRLAIPPPREAATARRAVQLGEPVAVSLRQRFDSCGGPSH
HHGDVIASGLRLRPESTSEWAFFPRVQRQPRNALERATLVPTAAAAAAAP
GAAISP*
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mRNA from alignment at S-dermatodea_contig12774:3489..4707+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12774.1696.1 ID=mRNA_S-dermatodea_contig12774.1696.1|Name=mRNA_S-dermatodea_contig12774.1696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1219bp|location=Sequence derived from alignment at S-dermatodea_contig12774:3489..4707+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCCCATTGAATGTCCTGCGCTGCACAACGCGCCGCAGATCGCGCGCTAC
GTGGACTAGAACAGGCAGAACTCGCGCTTGAGAATTACCTTCTTCCACGC
CGGCAACTCCCTGTACGCGGCGAACGGCATCGAGAACACGGCTTCAAATT
CGAACGAACACAGCCACTCCTCCCGCCGCGCGGGGTCGACTCCGCGAGGC
CAGTCGCGACCGAGCCCGGCCAAACGCCGGAAACGGCACGGAGTTCCCCC
GGCAGCACCCCCGCCCCTCGACCAGCCCACGCGCACGAGGGGGCGGACGA
GGGGAACGAAAACGGCCGGCGAAGATGCGTCGCTGTCTCCTGCAGACTCG
CCATCCCACCTCCCAGAGAAGCCGCCACCGCCCGAAGAGCGGTCCAGCTC
GGCGAGCCGGTCGCGGTCTCGCTGCGGCAGCGCTTCGATTCGTGCGGCGG
CCCTAGCCATCATCACGGAGATGTCATCGCCTCCGGCCTTCGTCTCCGCC
CCGAAAGCACTTCGGAGTGGGCTTTCTTTCCCCGTGTCCAACGCCAACCC
CGAAACGCTCTTGAAAGAGCCACGCTTGTCCCAACTGCCGCCGCTGCTGC
AGCGGCGCCAGGAGCCGCTATCAGTCCCTGATCCCTGCAGGTCGTCCTTT
TCGATCCACTCGTCGGCCGAGCCCGACACGAGCGGGGACGGTGGCAGCGT
ATCCCCCTTCGAGTCCGCCCGCCACGCTTCCGATCCCCCGCGCGACCCAC
CCGACATTTTCAAGACGGTCGACATCTTTAAAACGGTCGATATCTTCGCC
GCCGAGGGTTGGGGCGTGTCAACGTCGCCAACGCCCACGGCGCCGCAGTC
CTTATCACAGTGGACGCTGTCAGGGTGGACACCGTGGTCGCTGTCAGCGT
GGTGGCTGTCAGCGTGGTGGCCATCACCGTGGTCGCTGTCAGGGTGGTCG
CTGTCACCGTGGTCATAGGCGGGTTGGTCGTCGCCTTCCTCCGGGCGGGG
ATCGGCGCAATTTCTCTTCCGCGGGGCGGCCGACATACCTCTCGCGAACG
ACGACGATGAAGGCTGCCATGCGAGCGCCGCGCGAACAGCGGCATCCATA
CCGCTTCCATCGCCGCCGCTCTCGCTGGCACTGCCACCACACTCCTCCTC
CACTGACGAGAGTCTGATAGTGGGGAAGCTGTTCCAAGCGAGCGCGGCCG
CAACCGCGGCCGCTGCTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12774:3489..4707+

>mRNA_S-dermatodea_contig12774.1696.1 ID=mRNA_S-dermatodea_contig12774.1696.1|Name=mRNA_S-dermatodea_contig12774.1696.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at S-dermatodea_contig12774:3489..4707+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCCTGCGCTGCACAACGCGCCGCAGATCGCGCGCTACGTGGACTAGA
ACAGGCAGAACTCGCGCTTGAGAATTACCTTCTTCCACGCCGGCAACTCC
CTGTACGCGGCGAACGGCATCGAGAACACGGCTTCAAATTCGAACGAACA
CAGCCACTCCTCCCGCCGCGCGGGGTCGACTCCGCGAGGCCAGTCGCGAC
CGAGCCCGGCCAAACGCCGGAAACGGCACGGAGTTCCCCCGGCAGCACCC
CCGCCCCTCGACCAGCCCACGCGCACGAGGGGGCGGACGAGGGGAACGAA
AACGGCCGGCGAAGATGCGTCGCTGTCTCCTGCAGACTCGCCATCCCACC
TCCCAGAGAAGCCGCCACCGCCCGAAGAGCGGTCCAGCTCGGCGAGCCGG
TCGCGGTCTCGCTGCGGCAGCGCTTCGATTCGTGCGGCGGCCCTAGCCAT
CATCACGGAGATGTCATCGCCTCCGGCCTTCGTCTCCGCCCCGAAAGCAC
TTCGGAGTGGGCTTTCTTTCCCCGTGTCCAACGCCAACCCCGAAACGCTC
TTGAAAGAGCCACGCTTGTCCCAACTGCCGCCGCTGCTGCAGCGGCGCCA
GGAGCCGCTATCAGTCCCTGAATGTCCTGCGCTGCACAACGCGCCGCAGA
TCGCGCGCTACGTGGACTAGAACAGGCAGAACTCGCGCTTGAGAATTACC
TTCTTCCACGCCGGCAACTCCCTGTACGCGGCGAACGGCATCGAGAACAC
GGCTTCAAATTCGAACGAACACAGCCACTCCTCCCGCCGCGCGGGGTCGA
CTCCGCGAGGCCAGTCGCGACCGAGCCCGGCCAAACGCCGGAAACGGCAC
GGAGTTCCCCCGGCAGCACCCCCGCCCCTCGACCAGCCCACGCGCACGAG
GGGGCGGACGAGGGGAACGAAAACGGCCGGCGAAGATGCGTCGCTGTCTC
CTGCAGACTCGCCATCCCACCTCCCAGAGAAGCCGCCACCGCCCGAAGAG
CGGTCCAGCTCGGCGAGCCGGTCGCGGTCTCGCTGCGGCAGCGCTTCGAT
TCGTGCGGCGGCCCTAGCCATCATCACGGAGATGTCATCGCCTCCGGCCT
TCGTCTCCGCCCCGAAAGCACTTCGGAGTGGGCTTTCTTTCCCCGTGTCC
AACGCCAACCCCGAAACGCTCTTGAAAGAGCCACGCTTGTCCCAACTGCC
GCCGCTGCTGCAGCGGCGCCAGGAGCCGCTATCAGTCCCTGA
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