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Homology
BLAST of mRNA_S-dermatodea_contig8827.16955.1 vs. uniprot
Match: D8LC29_ECTSI (tRNA-uridine aminocarboxypropyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC29_ECTSI) HSP 1 Score: 151 bits (381), Expect = 1.620e-42 Identity = 76/101 (75.25%), Postives = 92/101 (91.09%), Query Frame = 1
Query: 1 AIYLVLKDFEEASGILTEGRRLEDLLFLFALMSSRIKDAYVTDPSKVGKAFPASEEAKRRRRSRLIRLDRLVKAKYKGLDAVRERDGEQVAVEEFYRRRRG 303
A YLVLKDFEEA+G++T G RLED+LFLFALM SRIK AY +DPSK+GK+ P+SEEAK+RRR RL++LDRLVKAKYKGLDA+RERDG++ A+EEF+RRRRG
Sbjct: 193 ATYLVLKDFEEATGLVTRGGRLEDILFLFALMGSRIKAAYESDPSKLGKSCPSSEEAKQRRRVRLVQLDRLVKAKYKGLDALRERDGDEAAIEEFFRRRRG 293
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 150.6 |
| Seed ortholog evalue | 4.3e-34 |
| Seed eggNOG ortholog | 2880.D8LC29 |
| Preferred name | DTWD1 |
| EggNOG free text desc. | DTW |
| EggNOG OGs | KOG3795@1,KOG3795@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | DTW |
| Ec32 ortholog | Ec-20_004220.1 |
| Exons | 3 |
| Model size | 333 |
| Cds size | 333 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8827.16955.1 >prot_S-dermatodea_contig8827.16955.1 ID=prot_S-dermatodea_contig8827.16955.1|Name=mRNA_S-dermatodea_contig8827.16955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
AIYLVLKDFEEASGILTEGRRLEDLLFLFALMSSRIKDAYVTDPSKVGKA
FPASEEAKRRRRSRLIRLDRLVKAKYKGLDAVRERDGEQVAVEEFYRRRR
GARYRHQPEL* back to topmRNA from alignment at S-dermatodea_contig8827:6466..8835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8827.16955.1 ID=mRNA_S-dermatodea_contig8827.16955.1|Name=mRNA_S-dermatodea_contig8827.16955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2370bp|location=Sequence derived from alignment at S-dermatodea_contig8827:6466..8835- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTATCTACCTCGTCCTGAAGGATTTTGAGGAAGCGTCAGGCATTTTGAC
GGAGGGGAGACGATTAGAGGACCTTCTGTTCCTTTTTGCCCTCATGAGCT
CGAGGATCAAGGTACGTCGAAGAGCGGCGGGGGCAGCACGACGAAAGCAA
TACATTTAAGCCCCTCGTTTTGGCAGCCCGGCTTATATTGTCTCCCTTCC
GTAGGCCCTCTGTCCCCCCAGGCCGCCCTCTCATGTCCTTCGAAACGAGT
AAAATATGCCCATCTAAACTCGACTGCTGTTGCCATATGGGCTACCCTCG
TTCTTACCGTGAACGTGGGCCGATGTACTGTGGTTGCAGCGCCTTTGCTT
GCCAGAGGGCATGCCGAAGGTGCCCCTTGTTTTTTAAAGCTTTAGTGGCA
CTTTGACATCCCATTGCGTTTATTTTTGCGAATAATGTTCCCCGTTGGTC
TCTCCGTCGGTCTCTGTTCCTGTGACAGGATGCTTATGTGACGGACCCTT
CGAAGGTTGGAAAGGCCTTCCCTGCCTCTGAAGAAGCCAAGCGGGTAAGG
GCCGCTTAGTGTTTTGTTTTCTGGCGGTGCTGGGCAGCGAAACCGGCCGG
ACGAATCACGCGAAGCCTGCATGACGCGCTCGTCGCTCGGCGACGCGAGA
TGTTTGGTTGGAATAGCGCGCATGACTGGGCACGCACCTCATGAGTATTA
TCAATCGGGAACCACGATCGAAATAGTTCGCATGTTCAGCACGCGCCAGG
TCGAACCTTGCGGAGACCCACGAGAAGGAACTGGCATTCGCTCTCTGAAA
GCAATCACTCCCATCTTGGATTTTACAGTTTTTGTGGTGGTCAGGATGAG
AACGAAAATATTCGGCACACATCAGAGCACTTTTGTGGGTTGCGGATCGT
TGCTGATACACAAAGAAATATCGGCCGATGTGGTGTATCATATCCATCGG
TTGAGAGCAGTACCGTACCGACATATCGGCCCTTTTACCGAAAAGGCTGT
GTAACACCTTCCAGCCCCCCTGGGTGCGTAGGGAGGGTCTCTCTTTGGTC
CGAAAATAATTGCGGGTAACAAGCTCGAGAATAACCGAGAAACAATACTT
CGTGTACACATAGCAACGTACCACCCACAAAAAGCAAACGGATCCAAAAC
TAGTTGTACGCATTATATGGAAGCTTTTGATACCTCTTTCAAGAAATTAA
ATGTCATACCCTGTGTGGTGCCTAGGGGCCAGTGGCCAGACCACGGCACC
TGCCGGCCGCAGAGCCTAGCGTTTTGTGTTGTGAAGTAAACCATGGGCTC
TTGTCTAGTAGAACATGGTTGAAACTCACTGTAAATTTCTTGAAGAGCAG
AGGGGTTCGTTTTTTTCCATCGTTATTGCGGAAGCTTCCTTTTTACACCA
GCAAAGGCGTTAGCAAGTACTGCTGTAACTAAAGAGCTTCAACAAAATGC
TTTTATCTGCAACGGACCGGACTGTTTGGGACGATAGTGGCAAAACGACG
CGATCGCTTCTTTTAATACAGACGATAGGAAGATGGGGTGACAAAGGCAA
AGGTGACCAATATTCCTGGCACCCACATGTTTAGCATGCCGTACGCAGAC
TGCCAGTACTTTGTTGTACGCGTTGTACCTGATATCGAGAATAAGGGAGA
GTGTTCGTGTGAGCAGTGCTACCAGTAGACGGTTGCGGAGGGTTGGATAC
TATTAATAGCATGAAGATGGATTGGACTTTTTGGGTGCTGGAGGTGCATT
TGACGGTTGCATGCCGAACGGGTACTTCGGCTATTGGTCGTGCTCAGGGT
GATTTATTCAGGATGGCTACGCAATGCTGTGCCGGGTGGTTTGTTAGTAG
GCGCACGCTGTGCCCGCTCCTTTCCGAGATGTGGAGCAAACAAACAACAA
TTTTTCCCTTGGTCGCTGACCGGCTGACAGGCCGTGTCCTACCGATGCAC
CACCTACGGAAGCAACCAACACATACATTATCAGAATACTCTCTCCACCT
TAGTGCGAACGGGGCTGAATGTCAATTTTGTGCCCTTGTATTCCTATTTT
TTTACTCGACGCAACCAAGCATCAATCTCGACATGTTCGAGTAATCAAGA
AACTCGACTCACCCCCGCGCCGTATCGGCACCGTTTCTCGGCCCAACATG
TTGATCCCTGTCCTGGACGCTGTTCTCCGCCGTCTTCCTGCCCCCCTCTG
CCCTCAACCCGCAGCGCCGTCGAAGTCGCCTGATTCGATTGGACCGCCTC
GTCAAGGCCAAGTATAAGGGATTAGATGCCGTGAGAGAGAGGGACGGGGA
ACAAGTGGCCGTAGAGGAGTTCTATCGGAGGCGTCGGGGAGCAAGGTACC
GGCATCAGCCCGAGCTCTAG back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8827:6466..8835- >mRNA_S-dermatodea_contig8827.16955.1 ID=mRNA_S-dermatodea_contig8827.16955.1|Name=mRNA_S-dermatodea_contig8827.16955.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig8827:6466..8835- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCTATCTACCTCGTCCTGAAGGATTTTGAGGAAGCGTCAGGCATTTTGAC
GGAGGGGAGACGATTAGAGGACCTTCTGTTCCTTTTTGCCCTCATGAGCT
CGAGGATCAAGGCTATCTACCTCGTCCTGAAGGATTTTGAGGAAGCGTCA
GGCATTTTGACGGAGGGGAGACGATTAGAGGACCTTCTGTTCCTTTTTGC
CCTCATGAGCTCGAGGATCAAGGATGCTTATGTGACGGACCCTTCGAAGG
TTGGAAAGGCCTTCCCTGCCTCTGAAGAAGCCAAGCGGGATGCTTATGTG
ACGGACCCTTCGAAGGTTGGAAAGGCCTTCCCTGCCTCTGAAGAAGCCAA
GCGGCGCCGTCGAAGTCGCCTGATTCGATTGGACCGCCTCGTCAAGGCCA
AGTATAAGGGATTAGATGCCGTGAGAGAGAGGGACGGGGAACAAGTGGCC
GTAGAGGAGTTCTATCGGAGGCGTCGGGGAGCAAGGTACCGGCATCAGCC
CGAGCTCTAGCGCCGTCGAAGTCGCCTGATTCGATTGGACCGCCTCGTCA
AGGCCAAGTATAAGGGATTAGATGCCGTGAGAGAGAGGGACGGGGAACAA
GTGGCCGTAGAGGAGTTCTATCGGAGGCGTCGGGGAGCAAGGTACCGGCA
TCAGCCCGAGCTCTAG back to top
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