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Homology
BLAST of mRNA_S-dermatodea_contig8800.16939.1 vs. uniprot
Match: D7FMG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMG9_ECTSI) HSP 1 Score: 279 bits (713), Expect = 9.450e-92 Identity = 138/193 (71.50%), Postives = 165/193 (85.49%), Query Frame = 2
Query: 2 YSMGAVLVSACCKYRLVDGLRKSKITMSYRAVMKGKEYWRMGTSILLFDLDNPLDVYTLVALFMSLSALERRFFKGSPGGMLTTLMFIASLLLAPGFYMRELRLKEPSVMMFVAIVTWATIRCFARPSAGIRS--MPTSLAPLIPLVMPHVRKWTVDMALLKHQGMAIAVGLACVLLIPDAEAARALRRSRQK 574
YSMGAVL+SACCKY LVDGLR+SK+TMSYR V +GKEYWR+G+S+LL+DL+NPLD+YTL ALFM L ALE++FFKGSP M +TL+FIA+ L PGFY RELRLKEP+VMM+VAI TWATIRCF RP+AG+ S M ++L PLIP+ PH RK +D+ALLKHQ MA+AVGLACVLLIPDAE ARALR+ RQ+
Sbjct: 10 YSMGAVLMSACCKYHLVDGLRRSKMTMSYRYVKQGKEYWRLGSSVLLYDLENPLDMYTLAALFMCLLALEQKFFKGSPSAMASTLVFIAAALFTPGFYFRELRLKEPAVMMYVAIATWATIRCFFRPTAGVGSQAMFSALGPLIPIATPHFRKGEIDVALLKHQAMAVAVGLACVLLIPDAEGARALRQKRQQ 202
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-23_000250.1 |
| Exons | 6 |
| Model size | 724 |
| Cds size | 717 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8800.16939.1 >prot_S-dermatodea_contig8800.16939.1 ID=prot_S-dermatodea_contig8800.16939.1|Name=mRNA_S-dermatodea_contig8800.16939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=239bp
MGAVLVSACCKYRLVDGLRKSKITMSYRAVMKGKEYWRMGTSILLFDLDN PLDVYTLVALFMSLSALERRFFKGSPGGMLTTLMFIASLLLAPGFYMREL RLKEPSVMMFVAIVTWATIRCFARPSAGIRSMPTSLAPLIPLVMPHVRKW TVDMALLKHQGMAIAVGLACVLLIPDAEAARALRRSRQKAASSKAAVGNG AGAAGGQAGAADDTSSDEDNSSSSEEEEEEEEESSDEE* back to topmRNA from alignment at S-dermatodea_contig8800:2113..8021- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig8800.16939.1 ID=mRNA_S-dermatodea_contig8800.16939.1|Name=mRNA_S-dermatodea_contig8800.16939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5909bp|location=Sequence derived from alignment at S-dermatodea_contig8800:2113..8021- (Saccorhiza dermatodea SderLu1190fm monoicous) GTACTCCATGGGGGCTGTGCTCGTGAGCGCCTGCTGCAAGTACCGGTTGG
TCGACGGCTTGAGGAAGTCCAAGGTGAGCTCAACTTTTGCGATACGTGTA
CTATTAAATAATTTTGTACATCAGAGTACATAGCCGGCAGGACCCTGCTC
ATAATTTGATCCTGCGACCGCGAATCTCCGAGGTCCACAGCAGTTGTAGT
ACGTACAATTAGTATCATACATGTATTTATTCCATTCGAGTGCGACATTG
ACTCGATTTGATTTGATTGATTATCACGTTTACAGAATCACGCTTACAAC
CGACCGGCCCGGCACTGCTTGCCGATGTCGCTATCTCGTGGTGGTCACAT
CATAATCATAATCATAATCATAACAAAAAAAAAACGAGAAATGGGGGGGG
AAATCTACGGAATTGCCTACACAGCTATTATACTTATATGAATAGAGCTT
CAGTAGTAATGCATGATAAACAATGAAAAAAAACAAACGAAACGCTCGGA
CATCAGAGGGTACGTAGCCATACCAGTACATTTTAATTTTTATAGTAGGA
CTTCTCCTTTAACTTGGGTATTACCCATCCTTGCACCCGAGCCCTCTTTT
CTTTAGAAGTGTGTATAAATTTTGTCATGGTAACCCTAAAATAACCTCGT
GGGTGGAGTGAAGAACCTCGTTGATGGGGACGGAGGCAATCGGGGGCTCC
AGATCGATCACTAGGGCAGCATGCATATCACTAGGGCAGCATGCATCTGT
CTATTGTATTATTATACTTATATTAGTAGTATGTACCGGTAGCACTCAAA
GCTCCTTGGATCAATTTTTTCGTATATTGGTACGATACAAAGGCGATCCC
CCGGTGGCGCACGTGGATGTGCGTGCCAACATGATAGCTCGCGATTCTAA
ACCGGTGGGAGGACACGATGAAGAACGAACAGCAAACTGTTCGAGGCGGG
AGACACAGACACGCAGGGCAAACAAGATCAGCGCTTCCCCTTACGGTTGC
CGGCGACGATTATTTTTTCAAAACCTTATCATAGTCTTGTAGTAGCTGCC
GTCAACATTTTTCTGCCTCGGTGTTACCGTACGTAGTTGGCGCGAGACCC
CCGCAAAGCTCGTGCCGCCTCTGGTAGGGTGAACATATTATGAAGTAATA
TAATAGTAGCCGCCCGGACTCGCGAGCAGACTCGCTCCCACAGCGCGCGC
TTTCCCTGAGCAGCCCAGGTTATCCTTGCTGGGGACATGACAACGCAGTC
GGCTGAGCGTCCCGCATGTCCTTTGATTGTCTGGCGCCCGAGCCTCCATC
GAGACACCGAAACACACCTGCGGCAATCGTCGCTGTCTCGATTTTTTACA
CAGGCCATGACGTGAGCGTGCCCAGGGGACCCTCGCCGCCCTACCAACCC
CCACCGCCACCTCTTGCTCTCTCTCTCTTGGTAGATAACGATGTCTTACC
GCGCAGTCATGAAGGGCAAAGAATACTGGAGGATGGGCACTAGCATTCTC
CTCTTCGACCTGGACAACCCTCTCGACGTGTACACGCTGGTGAGAAAGTG
TTGGGATTCCGTCGCAATAAATCTCGTAAATGTGATTGATTTTTCGGGCA
AGGACGGGTCTGCGGTTTCACGCGCTCCTCTTCTCAGTTTCGGATCAAAT
GCTGTTCACGGATCATCTCCGCGGCGCTTTACCCACCCATCGCAAGATAC
AGCGCTTGACTCAAGTAATAGGTATTAGCAGGTAGCCACGGCTATGCCGT
GAGGCGTGCGTGATCGCTCAACACAAACATTCAAGTTGTTTTAGCATATC
ACTTTTTGGTGGAACAAAAACGTGTACTGGTAGGATTTTGTGTTGCGCAA
GAAGTATAGGAAATAGTGGAGACGTGGTCACTCTAAAATCGCTACTAAAA
AAGGACAAAGCGCTTACAGTATTAAATATTACAGATATGTATTGCTGCCC
TCCGTGCAAATCAAAGCAGCACATTATCTCCTAGAACGATGTTCCCTCGC
GTGTCTCGTCCCATCGCGTCGCGTCGGAGGCATTACAAATGCCATACCCG
GAGGGAGACGAATAGGGCCCACACTTTTTCAAACCTGGGACACATTCCGC
CATACCAGACCCTTTCGGATCACGTTTGAAGCCATCGACAGCATGGCCCA
CATATGCGGCTGTAGCAGTGAAGCGGTGCCTGGTCGCGGCGCTGTTTCTC
GTGGACCTATAATACGACGTCGTTAAATGGTAATTTGCTCACTACAGGTT
TTTCCAAGTCTGTTTTATCTCTTGTTTTGTTGAAAAGTGTAATATTAATA
AATATTAATATTACAGTAACTATTAATATTAATATTACATTAACTATTAA
TATTAATATTAATACTAAGGAGGACCATAGTTAACAGGTCCAAATTAGCT
GCAAGTCTCAACTTAGAATTATCGATATTTCATGGTCGATGTTGTTGTAT
AAGGCCAGCCAGACCTCGTGATGTTTTTCTTCATGAGATTTTTGTTGTTG
TTTGGGTGTGATATTCATGGCCGGAACATTTGGGTATTCATGGTCCTGAT
TACTATTACTTGATTATAGTGTACCTCCGTAAGTAGTAGTAATCGCCTGG
TTAGGGCATACACTGTTGTACTATTAATAATATAAATACTGTTACCGTAT
ACAGGCAACATGGTGTCTTAACAACAGGAGCGAAAAACACCCTTTCTCCC
AAACTCGTTGATCGACCGCCGCCCCCAACCACAGGTCGCGTTGTTCATGT
CTTTGTCGGCGTTGGAGAGGCGTTTCTTCAAGGGGTCGCCGGGGGGGATG
CTCACCACGCTCATGTTCATCGCCTCGCTGCTGTTAGCCCCCGGTTTTTA
CATGAGGGTGAGAGACGTATGGCTCGATTTCTATACAAGGCGACTGATAT
GTTTTGCTAACTTTTTGTGGGTCTCGAGGCAAGCAGCCGTTCCAGGAAAT
CGGCGGTCCCATAGGCCCTTTATTGGTATAGTTTATCGCGCGGTGGACGG
GCGGGCGGGCGGGCGACCAGGTATACCCCTGCGCGGCGACATAAATACTG
TAGGCTTTTGCCAGAAGGAAACCAGCGAGAAGACGGGAACAAGACCGTGC
GATATTGGCGGCAGTGTGGACCGAACACCAACGGAGGGCGCATAGTTCGG
ATGGGCTGGTGGGTAATTCTCGTCAAGGCGCGTGTGTGTTGAGTTCGAGA
GAACGCAACGCTCTCCGCTGTGGCCTAGATAGACACCACAGTAGCCTAAG
TATTACTATTATAGGTATAATAGCACTCGCATTTCGCTTTTGAACCCCAA
GGTCGATGTGCCAGAGTTGGCTGTTCTTGAACAGACGCAGGGATATTTCT
GAACGCACGCACTCTCCCTCTCTTTCTCTCTCCGGTTGGCTACGAAAAAC
GCACGACGCAGGAACTCCGGCTCAAGGAACCGTCGGTGATGATGTTCGTC
GCCATCGTCACGTGGGCCACGATCAGGTAACTGCTTCAAGGAACCCGCAA
ACCTCAGCCTTGCTGTACATGGTGCGGGTTGCACCCCCCGCGTACCTGCC
GCCTCTTGAACACTACGTACATAAGCTATTATATGTACGGTTTGTCTGTG
TGTAAGAGGTATCACCCGGCCTCTGTTGCTCTTGCACGTGTGGGATTGTC
GCGCCCGTCTCCACCGGCCATTCCCTGTGATCGCTTGATTGATTTATTGA
TTGATTGATTGCTTGATTGATTTGATTATCACACTTACAACCGACCGGCC
CGCCAATGGTTGCCGATCCCGCTCGTGGTCAGATGAGAAAAAATCGAGGG
ATCGAGAGAAACCCTACGGAGTTACCTACATTTTTCGAAGTATATATATA
TATAGTCCATACAAAGAAGGAATTGACACGAACTTACTCTCGGATCAAGA
GGGGGCATACCTCGGAACACCTTGGGCCTGCTAACACGAAAAACGAAAGA
AGGGCCCCACTCCTCCTATTGTATAGAAAGGGCTCAGGGCACCCGCGATG
TCCTTATCGAGTCTTGCACCCGTTCCGCAAACACAAAGAAATAAGACTAT
GAAGAAACGCAGGCCTAACTCTATACTCTCCGATGCGTTTGCCCGCCCGT
AGTGGCAGGTTGCAGGATTATCGTAGGGACCGGCTTTCCGCCACCAGTCT
AAGCGGCGGCGGTGTGTAGCTATAATATTACTATCAATGCCCCCCTGAAA
CGAGTTGAAAGAGCTTCATCTTCCCCCAGAGAGTCCACGAGCCTCGACCC
TTTTCTTTATGTTTGCCGCTGCTGGACCACCTGTTTTTTGTTTGTCTTTG
CGGCGCTCCAGGTGCTTCGCGCGGCCTTCTGCGGGAATCAGGAGCATGCC
TACATCATTGGCTCCGCTGATACCGCTAGTTATGCCACACGTTCGGAAAT
GGACGGTCGACATGGCGTTGCTCAAACACCAAGGGATGGCGATCGCGGTG
GGGCTCGCGGTGAGTCCTCGGAAGGCATCTGGCCTACTTCGCCTTGCTGT
CCGTTAGTCGTGTATTTCTAGGCGCGAGCGCTTGTGCATTTTGCTTTTGC
CTCCATGTTGCGTGGGCACGCGCATGCTTGTCGTACCGAAAATACGACAC
GCAAGCGTCACGTAAATAGCACGTGTGCGCGCGGGCGTACGCGTTTGTCG
CGGAAGTGAAAAGTCTTGCCACAAGGTCGCGTCTCAAGCCTCGCGCTTGT
TCCGCCCCCCACAGGGGAATTCAAGGTAACCTTCTTGGTCCTTGAATTTC
GCTTTTGCGCCAAGCATCGTCACTAACTACATTGTATATCGCGGTCACGG
GGTGCACGCACAAGGGCAGCACCGCGCATGCAAGCTCAGCGAAGCACGTT
TATTTTTTTACTTTTGCCATGCCCACCGCGGACTGTGGCGAGAGGTTTTG
TGCCGCCGTTCGGTCATGGGTTCGATGTGAAATACACTTGTGCGTGCAAC
TGTAGATACCATAACCCCGCAAGAGAACGAAAGCAGGCTCGGAGTTCCCA
AAGGTTTGAGGGCATTATTTCACTCCCGGCCAAAGGGTCTCCTTCCTCCA
CAGCGTCGCGCTCAGTAGGTTACGAGGTATGACCACGGTCAAACGAACAA
GACGGAATGCCTGCACAGCGACGCCAAAGCCACCAGTGTCGTATCCCCGC
AGTGACGCAGCATTGATACGTGCGCGGTCGAGGTAACCTGATATCGTATC
GGGAAAACAAGTTCCCCCGCCCGCCCCTAGCTCCCCGCGCGTCTTTTTTG
TGTTTGCACACCTATTAATATTTGTATTAGTGTTATTATAGTATTAGTAT
TAGTATTAGTATGATAGACCGGCTTTTCCGAGGTCCGTATGTGGCCATAA
GGGATCATCCCATCTCTCTTATCTTATACGATATACTATATACTATTCAG
TACATACTATCCATCATCCCATCTCTCTTATCCCCTGTTATTAGCTTAGG
TTTTTATCGCGATTGGGCTCGGCATCACTCACGCAGCTCGCCGACAAATT
CTCGGATTTTCTCTTACTCACACTATCGCGAGTTCCGCGGCGGAGGTAAG
AGATCAAACAAAATAATATTCTACCCTGTCCTGTCCGGATTCGAACCCAC
GTCCCCCGCCTTACTGGGACGTTGAGTGAAACCAGTTCGTTCAACCACGA
GGCGCGCGAATGTGACCAGTCTCATTCCCCTCCGTATTTTTTTTCGCAGT
GCGTTCTTCTCATCCCCGACGCGGAGGCAGCACGTGCCCTGCGCCGGTCG
CGACAAAAAGCGGCCAGCAGCAAGGCTGCCGTAGGAAATGGGGCGGGCGC
GGCGGGGGGCCAGGCCGGGGCGGCTGACGATACTAGTAGCGACGAGGACA
ACAGCAGCAGCAGTGAAGAAGAAGAAGAAGAAGAAGAAGAGAGTAGTGAC
GAGGAGTAA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig8800:2113..8021- >mRNA_S-dermatodea_contig8800.16939.1 ID=mRNA_S-dermatodea_contig8800.16939.1|Name=mRNA_S-dermatodea_contig8800.16939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at S-dermatodea_contig8800:2113..8021- (Saccorhiza dermatodea SderLu1190fm monoicous) ATGGGGGCTGTGCTCGTGAGCGCCTGCTGCAAGTACCGGTTGGTCGACGG CTTGAGGAAGTCCAAGATGGGGGCTGTGCTCGTGAGCGCCTGCTGCAAGT ACCGGTTGGTCGACGGCTTGAGGAAGTCCAAGATAACGATGTCTTACCGC GCAGTCATGAAGGGCAAAGAATACTGGAGGATGGGCACTAGCATTCTCCT CTTCGACCTGGACAACCCTCTCGACGTGTACACGCTGATAACGATGTCTT ACCGCGCAGTCATGAAGGGCAAAGAATACTGGAGGATGGGCACTAGCATT CTCCTCTTCGACCTGGACAACCCTCTCGACGTGTACACGCTGGTCGCGTT GTTCATGTCTTTGTCGGCGTTGGAGAGGCGTTTCTTCAAGGGGTCGCCGG GGGGGATGCTCACCACGCTCATGTTCATCGCCTCGCTGCTGTTAGCCCCC GGTTTTTACATGAGGGTCGCGTTGTTCATGTCTTTGTCGGCGTTGGAGAG GCGTTTCTTCAAGGGGTCGCCGGGGGGGATGCTCACCACGCTCATGTTCA TCGCCTCGCTGCTGTTAGCCCCCGGTTTTTACATGAGGGAACTCCGGCTC AAGGAACCGTCGGTGATGATGTTCGTCGCCATCGTCACGTGGGCCACGAT CAGGAACTCCGGCTCAAGGAACCGTCGGTGATGATGTTCGTCGCCATCGT CACGTGGGCCACGATCAGGTGCTTCGCGCGGCCTTCTGCGGGAATCAGGA GCATGCCTACATCATTGGCTCCGCTGATACCGCTAGTTATGCCACACGTT CGGAAATGGACGGTCGACATGGCGTTGCTCAAACACCAAGGGATGGCGAT CGCGGTGGGGCTCGCGGTGCTTCGCGCGGCCTTCTGCGGGAATCAGGAGC ATGCCTACATCATTGGCTCCGCTGATACCGCTAGTTATGCCACACGTTCG GAAATGGACGGTCGACATGGCGTTGCTCAAACACCAAGGGATGGCGATCG CGGTGGGGCTCGCGTGCGTTCTTCTCATCCCCGACGCGGAGGCAGCACGT GCCCTGCGCCGGTCGCGACAAAAAGCGGCCAGCAGCAAGGCTGCCGTAGG AAATGGGGCGGGCGCGGCGGGGGGCCAGGCCGGGGCGGCTGACGATACTA GTAGCGACGAGGACAACAGCAGCAGCAGTGAAGAAGAAGAAGAAGAAGAA GAAGAGAGTAGTGACGAGGAGTAATGCGTTCTTCTCATCCCCGACGCGGA GGCAGCACGTGCCCTGCGCCGGTCGCGACAAAAAGCGGCCAGCAGCAAGG CTGCCGTAGGAAATGGGGCGGGCGCGGCGGGGGGCCAGGCCGGGGCGGCT GACGATACTAGTAGCGACGAGGACAACAGCAGCAGCAGTGAAGAAGAAGA AGAAGAAGAAGAAGAGAGTAGTGACGAGGAGTAA back to top
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