prot_S-dermatodea_contig8800.16939.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8800.16939.1
Unique Nameprot_S-dermatodea_contig8800.16939.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length239
Homology
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BLAST of mRNA_S-dermatodea_contig8800.16939.1 vs. uniprot
Match: D7FMG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMG9_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 4.110e-90
Identity = 136/191 (71.20%), Postives = 163/191 (85.34%), Query Frame = 0 
Query:    1 MGAVLVSACCKYRLVDGLRKSKITMSYRAVMKGKEYWRMGTSILLFDLDNPLDVYTLVALFMSLSALERRFFKGSPGGMLTTLMFIASLLLAPGFYMRELRLKEPSVMMFVAIVTWATIRCFARPSAGIRS--MPTSLAPLIPLVMPHVRKWTVDMALLKHQGMAIAVGLACVLLIPDAEAARALRRSRQK 189
            MGAVL+SACCKY LVDGLR+SK+TMSYR V +GKEYWR+G+S+LL+DL+NPLD+YTL ALFM L ALE++FFKGSP  M +TL+FIA+ L  PGFY RELRLKEP+VMM+VAI TWATIRCF RP+AG+ S  M ++L PLIP+  PH RK  +D+ALLKHQ MA+AVGLACVLLIPDAE ARALR+ RQ+
Sbjct:   12 MGAVLMSACCKYHLVDGLRRSKMTMSYRYVKQGKEYWRLGSSVLLYDLENPLDMYTLAALFMCLLALEQKFFKGSPSAMASTLVFIAAALFTPGFYFRELRLKEPAVMMYVAIATWATIRCFFRPTAGVGSQAMFSALGPLIPIATPHFRKGEIDVALLKHQAMAVAVGLACVLLIPDAEGARALRQKRQQ 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8800.16939.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMG9_ECTSI4.110e-9071.20Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007599DerlinPFAMPF04511DER1coord: 2..109
e-value: 9.7E-5
score: 22.4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 79..95
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 96..106
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 73..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 54..72
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..238
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..53
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..123
NoneNo IPR availableTMHMMTMhelixcoord: 106..123
NoneNo IPR availableTMHMMTMhelixcoord: 74..96

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8800contigS-dermatodea_contig8800:2113..8014 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8800.16939.1mRNA_S-dermatodea_contig8800.16939.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8800 2113..8021 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8800.16939.1 ID=prot_S-dermatodea_contig8800.16939.1|Name=mRNA_S-dermatodea_contig8800.16939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=239bp
MGAVLVSACCKYRLVDGLRKSKITMSYRAVMKGKEYWRMGTSILLFDLDN
PLDVYTLVALFMSLSALERRFFKGSPGGMLTTLMFIASLLLAPGFYMREL
RLKEPSVMMFVAIVTWATIRCFARPSAGIRSMPTSLAPLIPLVMPHVRKW
TVDMALLKHQGMAIAVGLACVLLIPDAEAARALRRSRQKAASSKAAVGNG
AGAAGGQAGAADDTSSDEDNSSSSEEEEEEEEESSDEE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007599DER1